ISVa16
- Family IS4
- Group IS4
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
CP011460 | ND | Vibrio anguillarum | Vibrio anguillarum serovar O2 (VIB12) Vibrio anguillarum 90-11-286 |
DNA section
IS Length : 1412 bp
Ends
IR Length : 16/18
IRL : TAATGCCGATCAGTTAAGGCCAAAGTGATCGGTTGAACGATCCTTCAGAG
IRR : TAATGCCGTTCACTTAAGAGTGAACGGCATTTTTGTTCTTAGCATACCGT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
tactctgtgggcaactagtcagaaaggaa | ccctcatgtac | tctgtttatacttatcctatcggtacgcc | 11 |
gagtaatctcagcgctgattaaaaaagg | caccttcgggtg | ccttttttgttgcgcttaattaatctacgcga | 12 |
aattcatcctttctgccatgaaaaaga | Gcgccaaaaggc | gctctttcactactttaatgtggccagtaactta | 12 |
tacagggtcatgcttaatcaaaaaagg | cttcgtaagaggc | cttttacttattcgtcattgacgttatttg | 13 |
AAAACAGGGA | GCCCAGAGCTC | CCTGTTTACT | 11 |
DNA sequence
TAATGCCGATCAGTTAAGGCCAAAGTGATCGGTTGAACGATCCTTCAGAGCTGTCAAAATCCAAGTGTATTTAATGCACTTGGATTTTTTTATGGATGTT
TCTCAAGCTCTAAACATAATTAATGATTGGAAACCTAGCAACGTTGAGACTTTGTCTGACTTACTTCCAATTGACCTCATCAACGAAGCTTATTCTCTTA
CTGATACCGTCACGATGAGAAAGAGGAAATTAACTCTAGAATCCATGGTTTGGTTACTTGTTGGAATGGCTATCTATAACAATAAATCCATGAAAGACTT
AGTTAACCAGCTTGATATTGTCGATCGTACGGGTAAAGCTTTTGTCGCACCGAGTGCGTTGACTCAACGTCGAAAGACGTTGGGTGAAGGCGCAATTAAA
GCGGTCTTTGAGCGAATGACAACCTCATGGTTAAAAAGTGCAAAGTTACCCCAGTGGAATGGATTAACGCTTCTTAGCGTCGATGGCGTTGTTTGGCGAA
CGCCCGATAACCCGCAAAATGAAAATGCATTTTCTCGACAAAAAGGGACACAATATCCGCAAGTGAGAATGGTCTGCCAAATGGAACTAAGCAGTCACAT
TATCACGGCCAGTGCCTTTGATAATTACAATACAAACGAAATGGTATTAGCTGAAAAACTGATAGAAACAACACCAAATCATAGCGTGACAATGTTCGAT
AAGGGGTTCTATTCTTTAGGTTTATTACATAAATGGCAAGACTCTGGCTCAGAGCGCCATTGGCTTATTCCCCTCAAGAAAAATACACAATATGACATTG
TTCAATCTTTAGGGCGAAATGACAAACTTGTTCAATTACACAGTAATCCAAGAGCTAGAAAGCGATGGTCTGATTTACCAAAGTCGATAACCGCTCGACT
TGTCACTCGTAAAATTAAAGGAAAAGACTACCAAGTATTAACTTCTATGACAGATCCGCTGCGTTACCCATCAAAAGATATTACTGGTCTTTATGAGCAT
CGTTGGGAGATAGAGCTAGGCTACCGAGAGCAAAAACAATACATGCTTGGAAACCGTCTCACGCTGCGAAGTCGTTTACCAGAGTTGGTAAAGCAGGAGT
TATGGGGCATCTTGCTTACTTACAATTTAATTCGATATCAGATGGTAGAGCTCTGCTTCAATTTAAAGGGAAACTACCTTCCTTATCAACTGAGTTTTAA
CGGCACATTAGCTCATGTATCTGCGTTACTTGTAGGCTTACCTTACTCAACACCAGGAGCAATACCTCGTCAGTTAAAGGGTTTTCACAACATGGCTGAA
AGCTTAATACTTGAAGGGCGAAGGGAAAGAACATTCCCTAGAACAGTTAAGCCTAGACCACAACGGTATGCTAAGAACAAAAATGCCGTTCACTCTTAAG
TGAACGGCATTA
TCTCAAGCTCTAAACATAATTAATGATTGGAAACCTAGCAACGTTGAGACTTTGTCTGACTTACTTCCAATTGACCTCATCAACGAAGCTTATTCTCTTA
CTGATACCGTCACGATGAGAAAGAGGAAATTAACTCTAGAATCCATGGTTTGGTTACTTGTTGGAATGGCTATCTATAACAATAAATCCATGAAAGACTT
AGTTAACCAGCTTGATATTGTCGATCGTACGGGTAAAGCTTTTGTCGCACCGAGTGCGTTGACTCAACGTCGAAAGACGTTGGGTGAAGGCGCAATTAAA
GCGGTCTTTGAGCGAATGACAACCTCATGGTTAAAAAGTGCAAAGTTACCCCAGTGGAATGGATTAACGCTTCTTAGCGTCGATGGCGTTGTTTGGCGAA
CGCCCGATAACCCGCAAAATGAAAATGCATTTTCTCGACAAAAAGGGACACAATATCCGCAAGTGAGAATGGTCTGCCAAATGGAACTAAGCAGTCACAT
TATCACGGCCAGTGCCTTTGATAATTACAATACAAACGAAATGGTATTAGCTGAAAAACTGATAGAAACAACACCAAATCATAGCGTGACAATGTTCGAT
AAGGGGTTCTATTCTTTAGGTTTATTACATAAATGGCAAGACTCTGGCTCAGAGCGCCATTGGCTTATTCCCCTCAAGAAAAATACACAATATGACATTG
TTCAATCTTTAGGGCGAAATGACAAACTTGTTCAATTACACAGTAATCCAAGAGCTAGAAAGCGATGGTCTGATTTACCAAAGTCGATAACCGCTCGACT
TGTCACTCGTAAAATTAAAGGAAAAGACTACCAAGTATTAACTTCTATGACAGATCCGCTGCGTTACCCATCAAAAGATATTACTGGTCTTTATGAGCAT
CGTTGGGAGATAGAGCTAGGCTACCGAGAGCAAAAACAATACATGCTTGGAAACCGTCTCACGCTGCGAAGTCGTTTACCAGAGTTGGTAAAGCAGGAGT
TATGGGGCATCTTGCTTACTTACAATTTAATTCGATATCAGATGGTAGAGCTCTGCTTCAATTTAAAGGGAAACTACCTTCCTTATCAACTGAGTTTTAA
CGGCACATTAGCTCATGTATCTGCGTTACTTGTAGGCTTACCTTACTCAACACCAGGAGCAATACCTCGTCAGTTAAAGGGTTTTCACAACATGGCTGAA
AGCTTAATACTTGAAGGGCGAAGGGAAAGAACATTCCCTAGAACAGTTAAGCCTAGACCACAACGGTATGCTAAGAACAAAAATGCCGTTCACTCTTAAG
TGAACGGCATTA
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1308 bp | 435 aa | 92 | 1399 | + | No |
Chemistry : DDE
ORF sequence :
MDVSQALNIINDWKPSNVETLSDLLPIDLINEAYSLTDTVTMRKRKLTLESMVWLLVGMAIYNNKSMKDLVNQLDIVDRTGKAFVAPSALTQRRKTLGEG
AIKAVFERMTTSWLKSAKLPQWNGLTLLSVDGVVWRTPDNPQNENAFSRQKGTQYPQVRMVCQMELSSHIITASAFDNYNTNEMVLAEKLIETTPNHSVT
MFDKGFYSLGLLHKWQDSGSERHWLIPLKKNTQYDIVQSLGRNDKLVQLHSNPRARKRWSDLPKSITARLVTRKIKGKDYQVLTSMTDPLRYPSKDITGL
YEHRWEIELGYREQKQYMLGNRLTLRSRLPELVKQELWGILLTYNLIRYQMVELCFNLKGNYLPYQLSFNGTLAHVSALLVGLPYSTPGAIPRQLKGFHN
MAESLILEGRRERTFPRTVKPRPQRYAKNKNAVHS
AIKAVFERMTTSWLKSAKLPQWNGLTLLSVDGVVWRTPDNPQNENAFSRQKGTQYPQVRMVCQMELSSHIITASAFDNYNTNEMVLAEKLIETTPNHSVT
MFDKGFYSLGLLHKWQDSGSERHWLIPLKKNTQYDIVQSLGRNDKLVQLHSNPRARKRWSDLPKSITARLVTRKIKGKDYQVLTSMTDPLRYPSKDITGL
YEHRWEIELGYREQKQYMLGNRLTLRSRLPELVKQELWGILLTYNLIRYQMVELCFNLKGNYLPYQLSFNGTLAHVSALLVGLPYSTPGAIPRQLKGFHN
MAESLILEGRRERTFPRTVKPRPQRYAKNKNAVHS
Blast result :
Comments
ISVa16 is 85% aa similar to ISShvi2.
References
1] Holm K.O. (2016) Direct submission
2) Busschaert P. et al (2014) Journal of Fish Diseases (doi:10.1111/jfd.12290)
3] VIB12 [in Austin B. et al (1995) Systematic and Applied Microbiology 18: 285-302
2) Busschaert P. et al (2014) Journal of Fish Diseases (doi:10.1111/jfd.12290)
3] VIB12 [in Austin B. et al (1995) Systematic and Applied Microbiology 18: 285-302