ISVa16

  • Family IS4
  • Group IS4
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
CP011460 ND Vibrio anguillarum
Vibrio anguillarum serovar O2 (VIB12)
Vibrio anguillarum 90-11-286
DNA section
IS Length : 1412 bp

Ends


IR Length : 16/18

IRL : TAATGCCGATCAGTTAAGGCCAAAGTGATCGGTTGAACGATCCTTCAGAG
IRR : TAATGCCGTTCACTTAAGAGTGAACGGCATTTTTGTTCTTAGCATACCGT

Insertion site


Left flankDirect repeatRight flankDR Length
tactctgtgggcaactagtcagaaaggaaccctcatgtactctgtttatacttatcctatcggtacgcc11
gagtaatctcagcgctgattaaaaaaggcaccttcgggtgccttttttgttgcgcttaattaatctacgcga12
aattcatcctttctgccatgaaaaagaGcgccaaaaggcgctctttcactactttaatgtggccagtaactta12
tacagggtcatgcttaatcaaaaaaggcttcgtaagaggccttttacttattcgtcattgacgttatttg13
AAAACAGGGAGCCCAGAGCTCCCTGTTTACT11

DNA sequence

TAATGCCGATCAGTTAAGGCCAAAGTGATCGGTTGAACGATCCTTCAGAGCTGTCAAAATCCAAGTGTATTTAATGCACTTGGATTTTTTTATGGATGTT
TCTCAAGCTCTAAACATAATTAATGATTGGAAACCTAGCAACGTTGAGACTTTGTCTGACTTACTTCCAATTGACCTCATCAACGAAGCTTATTCTCTTA
CTGATACCGTCACGATGAGAAAGAGGAAATTAACTCTAGAATCCATGGTTTGGTTACTTGTTGGAATGGCTATCTATAACAATAAATCCATGAAAGACTT
AGTTAACCAGCTTGATATTGTCGATCGTACGGGTAAAGCTTTTGTCGCACCGAGTGCGTTGACTCAACGTCGAAAGACGTTGGGTGAAGGCGCAATTAAA
GCGGTCTTTGAGCGAATGACAACCTCATGGTTAAAAAGTGCAAAGTTACCCCAGTGGAATGGATTAACGCTTCTTAGCGTCGATGGCGTTGTTTGGCGAA
CGCCCGATAACCCGCAAAATGAAAATGCATTTTCTCGACAAAAAGGGACACAATATCCGCAAGTGAGAATGGTCTGCCAAATGGAACTAAGCAGTCACAT
TATCACGGCCAGTGCCTTTGATAATTACAATACAAACGAAATGGTATTAGCTGAAAAACTGATAGAAACAACACCAAATCATAGCGTGACAATGTTCGAT
AAGGGGTTCTATTCTTTAGGTTTATTACATAAATGGCAAGACTCTGGCTCAGAGCGCCATTGGCTTATTCCCCTCAAGAAAAATACACAATATGACATTG
TTCAATCTTTAGGGCGAAATGACAAACTTGTTCAATTACACAGTAATCCAAGAGCTAGAAAGCGATGGTCTGATTTACCAAAGTCGATAACCGCTCGACT
TGTCACTCGTAAAATTAAAGGAAAAGACTACCAAGTATTAACTTCTATGACAGATCCGCTGCGTTACCCATCAAAAGATATTACTGGTCTTTATGAGCAT
CGTTGGGAGATAGAGCTAGGCTACCGAGAGCAAAAACAATACATGCTTGGAAACCGTCTCACGCTGCGAAGTCGTTTACCAGAGTTGGTAAAGCAGGAGT
TATGGGGCATCTTGCTTACTTACAATTTAATTCGATATCAGATGGTAGAGCTCTGCTTCAATTTAAAGGGAAACTACCTTCCTTATCAACTGAGTTTTAA
CGGCACATTAGCTCATGTATCTGCGTTACTTGTAGGCTTACCTTACTCAACACCAGGAGCAATACCTCGTCAGTTAAAGGGTTTTCACAACATGGCTGAA
AGCTTAATACTTGAAGGGCGAAGGGAAAGAACATTCCCTAGAACAGTTAAGCCTAGACCACAACGGTATGCTAAGAACAAAAATGCCGTTCACTCTTAAG
TGAACGGCATTA
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1308 bp435 aa921399+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MDVSQALNIINDWKPSNVETLSDLLPIDLINEAYSLTDTVTMRKRKLTLESMVWLLVGMAIYNNKSMKDLVNQLDIVDRTGKAFVAPSALTQRRKTLGEG
AIKAVFERMTTSWLKSAKLPQWNGLTLLSVDGVVWRTPDNPQNENAFSRQKGTQYPQVRMVCQMELSSHIITASAFDNYNTNEMVLAEKLIETTPNHSVT
MFDKGFYSLGLLHKWQDSGSERHWLIPLKKNTQYDIVQSLGRNDKLVQLHSNPRARKRWSDLPKSITARLVTRKIKGKDYQVLTSMTDPLRYPSKDITGL
YEHRWEIELGYREQKQYMLGNRLTLRSRLPELVKQELWGILLTYNLIRYQMVELCFNLKGNYLPYQLSFNGTLAHVSALLVGLPYSTPGAIPRQLKGFHN
MAESLILEGRRERTFPRTVKPRPQRYAKNKNAVHS

 

Blast result :
Comments
ISVa16 is 85% aa similar to ISShvi2.
References
1] Holm K.O. (2016) Direct submission
2) Busschaert P. et al (2014) Journal of Fish Diseases (doi:10.1111/jfd.12290)
3] VIB12 [in Austin B. et al (1995) Systematic and Applied Microbiology 18: 285-302