ISCoba1

  • Family IS1595
  • Group ISSod11
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
JUEA01000094 ND Comamonadaceae bacterium
Comamonadaceae bacterium BICA1-1
DNA section
IS Length : 1111 bp

Ends


IR Length : 30/32

IRL : CGTGCTTATCGGGTTGTCACACACACCCACTACCGGTAGTATGGTGAGTA
IRR : AGTGCTTATCGGGTTGTCACACACACCTACTAGATGTAGGGGTTCGTGAT

Insertion site


Left flankDirect repeatRight flankDR Length
gtgccccataCGTCAAAGtagttgtcgc8

DNA sequence

CGTGCTTATCGGGTTGTCACACACACCCACTACCGGTAGTATGGTGAGTAACTGCATCAACTTGGGGTTAACGTGGCGATCGACGTTCTTGAGCGAGACG
ATTTGGCGTTTCCGCGCTCGCTGCCGGAGTTTCAGCGGCTGTTTCCAAACGAGGCCGCCTGTGCGACCTACCTTGAGCGCGTGCGATGGGGCGATGGCTT
CGCCTGTCCTCGTTGTGGCACATCCGGTGAGCCTTACCGTATCTCCACTCGCCCCGGCGTGCTGCGTTGTCGGAAGTGTCGTTGTGACACGAGCCTCACC
GCTGGCACCATCATGGAGCGCACGCACACGCCGCTTTCGGTCTGGTTCTGGGCAGCATACTTGGTCACCAGTCAAACGCCCGGAATGTCGGCTGTACAGT
TTCAACGGCAACTCGGACTCCCGTGCTACGAGACCGCATTCCAGATTCTTCACAAGCTGCGCGTCGGCATGGTACGACCCGACCAGGATCGAATTGGCGG
CAGGCCCGAGGAGCACGTCGAGGCCGATGAAACCTACATCGGCGGGCGTACCCGCGGCAAGGGCAGGGGTGTGCACGACATGGTACTCGTGGCAGGCGCC
GTTGAAGTCCGCCAGCGCAAGCAGCAAGGGAGTCGCAATAAGCGCAGGACCGGGCGCTATGCAGGACGCGTTCGCCTTGCCGTTGCGCCAGATCGTAGCG
CCAAGTCGCTGGGCGGATTTATCGAGCGCACCGTTGTACCCGGAGCCACCATCATCACCGATGACTGGAGCGGTTACGTCAAGTTGGGCGCGCGCGGCTA
TTGCCATACCGCCGTCGCGGAGCGCGGCGACATGCAAGTTGCCGAGACCTTCCTGCCGATCATTCACCTCGTGTTCTCCAATCTCAAGACCTGGCTGCGT
GGCACCCATCACGGCGTCAGCCCACAGCACCTATCAGCCTATCTCAACGAATTCACCTTCCGCTTCAACCGTCGCTTCTACCCCTTCAACGCCTTCCGTT
CTCTGCTCGGCATCGCTGGCGATGTCACCGCCCCCACATACGCCGATCTGTACGCCGAAAAATCACGAACCCCTACATCTAGTAGGTGTGTGTGACAACC
CGATAAGCACT
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1023 bp340 aa731095+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MAIDVLERDDLAFPRSLPEFQRLFPNEAACATYLERVRWGDGFACPRCGTSGEPYRISTRPGVLRCRKCRCDTSLTAGTIMERTHTPLSVWFWAAYLVTS
QTPGMSAVQFQRQLGLPCYETAFQILHKLRVGMVRPDQDRIGGRPEEHVEADETYIGGRTRGKGRGVHDMVLVAGAVEVRQRKQQGSRNKRRTGRYAGRV
RLAVAPDRSAKSLGGFIERTVVPGATIITDDWSGYVKLGARGYCHTAVAERGDMQVAETFLPIIHLVFSNLKTWLRGTHHGVSPQHLSAYLNEFTFRFNR
RFYPFNAFRSLLGIAGDVTAPTYADLYAEKSRTPTSSRCV*

 

Blast result :
Comments
ISCoba1 is 88% aa similar to ISCARN100.
References