ISCoba1
- Family IS1595
- Group ISSod11
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
JUEA01000094 | ND | Comamonadaceae bacterium | Comamonadaceae bacterium BICA1-1 |
DNA section
IS Length : 1111 bp
Ends
IR Length : 30/32
IRL : CGTGCTTATCGGGTTGTCACACACACCCACTACCGGTAGTATGGTGAGTA
IRR : AGTGCTTATCGGGTTGTCACACACACCTACTAGATGTAGGGGTTCGTGAT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
gtgccccata | CGTCAAAG | tagttgtcgc | 8 |
DNA sequence
CGTGCTTATCGGGTTGTCACACACACCCACTACCGGTAGTATGGTGAGTAACTGCATCAACTTGGGGTTAACGTGGCGATCGACGTTCTTGAGCGAGACG
ATTTGGCGTTTCCGCGCTCGCTGCCGGAGTTTCAGCGGCTGTTTCCAAACGAGGCCGCCTGTGCGACCTACCTTGAGCGCGTGCGATGGGGCGATGGCTT
CGCCTGTCCTCGTTGTGGCACATCCGGTGAGCCTTACCGTATCTCCACTCGCCCCGGCGTGCTGCGTTGTCGGAAGTGTCGTTGTGACACGAGCCTCACC
GCTGGCACCATCATGGAGCGCACGCACACGCCGCTTTCGGTCTGGTTCTGGGCAGCATACTTGGTCACCAGTCAAACGCCCGGAATGTCGGCTGTACAGT
TTCAACGGCAACTCGGACTCCCGTGCTACGAGACCGCATTCCAGATTCTTCACAAGCTGCGCGTCGGCATGGTACGACCCGACCAGGATCGAATTGGCGG
CAGGCCCGAGGAGCACGTCGAGGCCGATGAAACCTACATCGGCGGGCGTACCCGCGGCAAGGGCAGGGGTGTGCACGACATGGTACTCGTGGCAGGCGCC
GTTGAAGTCCGCCAGCGCAAGCAGCAAGGGAGTCGCAATAAGCGCAGGACCGGGCGCTATGCAGGACGCGTTCGCCTTGCCGTTGCGCCAGATCGTAGCG
CCAAGTCGCTGGGCGGATTTATCGAGCGCACCGTTGTACCCGGAGCCACCATCATCACCGATGACTGGAGCGGTTACGTCAAGTTGGGCGCGCGCGGCTA
TTGCCATACCGCCGTCGCGGAGCGCGGCGACATGCAAGTTGCCGAGACCTTCCTGCCGATCATTCACCTCGTGTTCTCCAATCTCAAGACCTGGCTGCGT
GGCACCCATCACGGCGTCAGCCCACAGCACCTATCAGCCTATCTCAACGAATTCACCTTCCGCTTCAACCGTCGCTTCTACCCCTTCAACGCCTTCCGTT
CTCTGCTCGGCATCGCTGGCGATGTCACCGCCCCCACATACGCCGATCTGTACGCCGAAAAATCACGAACCCCTACATCTAGTAGGTGTGTGTGACAACC
CGATAAGCACT
ATTTGGCGTTTCCGCGCTCGCTGCCGGAGTTTCAGCGGCTGTTTCCAAACGAGGCCGCCTGTGCGACCTACCTTGAGCGCGTGCGATGGGGCGATGGCTT
CGCCTGTCCTCGTTGTGGCACATCCGGTGAGCCTTACCGTATCTCCACTCGCCCCGGCGTGCTGCGTTGTCGGAAGTGTCGTTGTGACACGAGCCTCACC
GCTGGCACCATCATGGAGCGCACGCACACGCCGCTTTCGGTCTGGTTCTGGGCAGCATACTTGGTCACCAGTCAAACGCCCGGAATGTCGGCTGTACAGT
TTCAACGGCAACTCGGACTCCCGTGCTACGAGACCGCATTCCAGATTCTTCACAAGCTGCGCGTCGGCATGGTACGACCCGACCAGGATCGAATTGGCGG
CAGGCCCGAGGAGCACGTCGAGGCCGATGAAACCTACATCGGCGGGCGTACCCGCGGCAAGGGCAGGGGTGTGCACGACATGGTACTCGTGGCAGGCGCC
GTTGAAGTCCGCCAGCGCAAGCAGCAAGGGAGTCGCAATAAGCGCAGGACCGGGCGCTATGCAGGACGCGTTCGCCTTGCCGTTGCGCCAGATCGTAGCG
CCAAGTCGCTGGGCGGATTTATCGAGCGCACCGTTGTACCCGGAGCCACCATCATCACCGATGACTGGAGCGGTTACGTCAAGTTGGGCGCGCGCGGCTA
TTGCCATACCGCCGTCGCGGAGCGCGGCGACATGCAAGTTGCCGAGACCTTCCTGCCGATCATTCACCTCGTGTTCTCCAATCTCAAGACCTGGCTGCGT
GGCACCCATCACGGCGTCAGCCCACAGCACCTATCAGCCTATCTCAACGAATTCACCTTCCGCTTCAACCGTCGCTTCTACCCCTTCAACGCCTTCCGTT
CTCTGCTCGGCATCGCTGGCGATGTCACCGCCCCCACATACGCCGATCTGTACGCCGAAAAATCACGAACCCCTACATCTAGTAGGTGTGTGTGACAACC
CGATAAGCACT
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1023 bp | 340 aa | 73 | 1095 | + | No |
Chemistry : DDE
ORF sequence :
MAIDVLERDDLAFPRSLPEFQRLFPNEAACATYLERVRWGDGFACPRCGTSGEPYRISTRPGVLRCRKCRCDTSLTAGTIMERTHTPLSVWFWAAYLVTS
QTPGMSAVQFQRQLGLPCYETAFQILHKLRVGMVRPDQDRIGGRPEEHVEADETYIGGRTRGKGRGVHDMVLVAGAVEVRQRKQQGSRNKRRTGRYAGRV
RLAVAPDRSAKSLGGFIERTVVPGATIITDDWSGYVKLGARGYCHTAVAERGDMQVAETFLPIIHLVFSNLKTWLRGTHHGVSPQHLSAYLNEFTFRFNR
RFYPFNAFRSLLGIAGDVTAPTYADLYAEKSRTPTSSRCV*
QTPGMSAVQFQRQLGLPCYETAFQILHKLRVGMVRPDQDRIGGRPEEHVEADETYIGGRTRGKGRGVHDMVLVAGAVEVRQRKQQGSRNKRRTGRYAGRV
RLAVAPDRSAKSLGGFIERTVVPGATIITDDWSGYVKLGARGYCHTAVAERGDMQVAETFLPIIHLVFSNLKTWLRGTHHGVSPQHLSAYLNEFTFRFNR
RFYPFNAFRSLLGIAGDVTAPTYADLYAEKSRTPTSSRCV*
Blast result :
Comments
ISCoba1 is 88% aa similar to ISCARN100.
References