ISRsp21
- Family IS1595
- Group ISSod11
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
FNAP01000012 | ND | Rhodospira trueperi | Rhodospira trueperi ATCC 700224 |
DNA section
IS Length : 1033 bp
Ends
IR Length : 20/23
IRL : GAGGCTTATCCCTTTGAATCCGGGACCACATCATGTGGTGACAGGTGACC
IRR : AAGGCTTATCCCTTTGTTTCCGGCGCGATCAACATATCGTAGGTGATGGG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TGATGCGAAA | TCTGGATG | ATCCGTAGCC | 8 |
DNA sequence
GAGGCTTATCCCTTTGAATCCGGGACCACATCATGTGGTGACAGGTGACCCGAAAAGGCGTAGAACATAAAGTGAACAAATGCCGTTTCCGGAGCCCGAT
CATGAGCGCGTTTCCCCGATCCCTGCTCGAATTCCAACGCCAGTTCTCTGACGAAGCCGCCTGCGCGGCGTACCTCGCGAGACAACGCTGGCCCGAGGGA
TTCGTCTGTCCGGTGTGCGGCGGCAAACGCGGCTGGGCGTTGGAAACCAAGGCGTGGACCACGGAGTGCGCCGACTGCGGCTGCCAGACTTCGGTCACGG
CCGGGACGGTCATGCATCGCAGCAAGCTGCCCCTGACGGTGTGGTTCTGGGCGGCGTATCTGATGGCGACCCACTCCAACGGCATCTCGGCCACCCAGAT
CCGGTCGCAACTGGGGCTGGGCTCCTACAAGACCGCCTGGCTGCTGTGCGCCAAGCTGCGCAGCGCCATGGTCAACCCGGAGCGCACGCCGCTGTCCGGC
CTCGTGGAGATGGATGAGACCACCATCCCCTTCAGAACACACGAGGATCCGCCCGCCAGCGGACAGGGGCGCAGCCACCAGGGCAAGATGTTGGTCGCCG
GGGCCGTCGAGATCATGGACGGAGGGCCGGGCCGCATCCGCCTGCGCGTCATCCCCGACTTCTCCGGCGAGACCCTGAAGGGTGTCGTCAAAGAGACCGT
CGCGTCCGGTGCCACGCTCAAGACCGACGGATGGGCCGGATACAGCGCCAGCGATGACGTCGCCCACGACCCCCATGTCATCGGCCCGATGGCCGCACAT
ATCGTGCTCCCCTGGGTCCACCGCGTGTTCTCCAACCTGAAAACCTGGGCGCTCGGCGTCTACCACGGTCTGCGGCGGAAGCATCTGCAATCCTACCTCG
ACGAATTCGTCTTCCGGTTCAACCGGCGCCGGACCCGGCACGCAGCCTTTCGATCCCTCCTGGGCATCGTCACCACCAAAGGACCCATCACCTACGATAT
GTTGATCGCGCCGGAAACAAAGGGATAAGCCTT
CATGAGCGCGTTTCCCCGATCCCTGCTCGAATTCCAACGCCAGTTCTCTGACGAAGCCGCCTGCGCGGCGTACCTCGCGAGACAACGCTGGCCCGAGGGA
TTCGTCTGTCCGGTGTGCGGCGGCAAACGCGGCTGGGCGTTGGAAACCAAGGCGTGGACCACGGAGTGCGCCGACTGCGGCTGCCAGACTTCGGTCACGG
CCGGGACGGTCATGCATCGCAGCAAGCTGCCCCTGACGGTGTGGTTCTGGGCGGCGTATCTGATGGCGACCCACTCCAACGGCATCTCGGCCACCCAGAT
CCGGTCGCAACTGGGGCTGGGCTCCTACAAGACCGCCTGGCTGCTGTGCGCCAAGCTGCGCAGCGCCATGGTCAACCCGGAGCGCACGCCGCTGTCCGGC
CTCGTGGAGATGGATGAGACCACCATCCCCTTCAGAACACACGAGGATCCGCCCGCCAGCGGACAGGGGCGCAGCCACCAGGGCAAGATGTTGGTCGCCG
GGGCCGTCGAGATCATGGACGGAGGGCCGGGCCGCATCCGCCTGCGCGTCATCCCCGACTTCTCCGGCGAGACCCTGAAGGGTGTCGTCAAAGAGACCGT
CGCGTCCGGTGCCACGCTCAAGACCGACGGATGGGCCGGATACAGCGCCAGCGATGACGTCGCCCACGACCCCCATGTCATCGGCCCGATGGCCGCACAT
ATCGTGCTCCCCTGGGTCCACCGCGTGTTCTCCAACCTGAAAACCTGGGCGCTCGGCGTCTACCACGGTCTGCGGCGGAAGCATCTGCAATCCTACCTCG
ACGAATTCGTCTTCCGGTTCAACCGGCGCCGGACCCGGCACGCAGCCTTTCGATCCCTCCTGGGCATCGTCACCACCAAAGGACCCATCACCTACGATAT
GTTGATCGCGCCGGAAACAAAGGGATAAGCCTT
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
927 bp | 308 aa | 102 | 1028 | + | No |
Chemistry : DDE
ORF sequence :
MSAFPRSLLEFQRQFSDEAACAAYLARQRWPEGFVCPVCGGKRGWALETKAWTTECADCGCQTSVTAGTVMHRSKLPLTVWFWAAYLMATHSNGISATQI
RSQLGLGSYKTAWLLCAKLRSAMVNPERTPLSGLVEMDETTIPFRTHEDPPASGQGRSHQGKMLVAGAVEIMDGGPGRIRLRVIPDFSGETLKGVVKETV
ASGATLKTDGWAGYSASDDVAHDPHVIGPMAAHIVLPWVHRVFSNLKTWALGVYHGLRRKHLQSYLDEFVFRFNRRRTRHAAFRSLLGIVTTKGPITYDM
LIAPETKG
RSQLGLGSYKTAWLLCAKLRSAMVNPERTPLSGLVEMDETTIPFRTHEDPPASGQGRSHQGKMLVAGAVEIMDGGPGRIRLRVIPDFSGETLKGVVKETV
ASGATLKTDGWAGYSASDDVAHDPHVIGPMAAHIVLPWVHRVFSNLKTWALGVYHGLRRKHLQSYLDEFVFRFNRRRTRHAAFRSLLGIVTTKGPITYDM
LIAPETKG
Blast result :
Comments
ISRsp21 is 82% aa similar to ISApr2.
References