ISTha4

  • Family IS1595
  • Group IS1595
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
JTDM01000021 ND Thauera sp.
Thauera sp.
DNA section
IS Length : 1042 bp

Ends


IR Length : 21/24

IRL : cctgattagcaacgatgctcagccaggcaccccaacgggtctataCTGTA
IRR : cttgaTTAGCAATGATGTTCAGCCGACCGAATCACCCGCTGAGGCTGCGG

Insertion site


Left flankDirect repeatRight flankDR Length
ccgggttcgaattgaatttggtctgaag8

DNA sequence

CCTGATTAGCAACGATGCTCAGCCAGGCACCCCAACGGGTCTATACTGTACGGAAATACAGTTTTTCTGCCGGGAGGTGCGCCATGCCGATGAACCGAAT
CCAGTTTCAAGCCGGACTGTCCATGCCCGAGTTTCTCCAGCGCTACGGAACCGAGCCGTCCTGCGAGGCGGCTTTGGAGAAGGCACGCTGGCCTGCGGGG
TTTCGGTGTCCGCGCTGTGATGGCGTTACTTACAGCCGGGTACGCGGGCGAACCTACGCGCTGTTCCAGTGCCAGGCGTGTCGACATCAAACGTCGCTGA
TCGCCGGCACCGTGATGCAGGGCACCAAACTGCCGCTGACGACCTGGTTCCTCGCGATCTACCTGATCAGCCAGGCCAAGACCGGACTGTCGGCGCTCGC
ACTCAAGCGCCACCTCGGGGTGAGCTATCCGACCGCTTGGCTCATCCACCACAAACTGATGCAGGCGATGGCCGATCGTGAGACGCGTTACGTGCTCGAT
GGCCAGGTCCAGGTCGATGATGCCTACCTGGGCGGCGAGCGCAGCGGTGGCAAAGTCGGCCGGGGCTCGGAGAACAAGGCCCCGTTCGTCGCCGCCGTCT
CCCTCAGTGACGAGGGCCACCCCCTGCGCGTCAAACTCACGCCTGTCTCGAGCTTCAGCATGGTCGCAATCGGCCAGTGGGCCAAGACCCATCTGGCTCC
GGGCAGCACCGTGTTCTCCGATGGACTGGCCTGCTTCGGTGCGGTGAGCGGTGCAGGTTGTGCGCATCAGCCAACCGTCGTCGGCAAGCGCAAACCGAAG
GACTTGCCCGAGTTCCAGTGGATCAACACCGTACTCGGTAACCTCAAGACGAGTTTGAGCGGCAGCTACCATGCGTTCGACTTCCGCAAATACGCAACGC
GATACCTGGCCGCGTTCACCTACCGATTCGACCGCCGATTCGATCTGCGCGCGCTTCACACGCGACTGCTCGTGGCTGCCGCCACCTGTGTGCCGCAGCC
TCAGCGGGTGATTCGGTCGGCTGAACATCATTGCTAATCAAG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
954 bp317 aa841037+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MPMNRIQFQAGLSMPEFLQRYGTEPSCEAALEKARWPAGFRCPRCDGVTYSRVRGRTYALFQCQACRHQTSLIAGTVMQGTKLPLTTWFLAIYLISQAKT
GLSALALKRHLGVSYPTAWLIHHKLMQAMADRETRYVLDGQVQVDDAYLGGERSGGKVGRGSENKAPFVAAVSLSDEGHPLRVKLTPVSSFSMVAIGQWA
KTHLAPGSTVFSDGLACFGAVSGAGCAHQPTVVGKRKPKDLPEFQWINTVLGNLKTSLSGSYHAFDFRKYATRYLAAFTYRFDRRFDLRALHTRLLVAAA
TCVPQPQRVIRSAEHHC

 

Blast result :
Comments
ISTha4 is 81% aa similar to ISTni3.
References