ISCap3

  • Family IS1595
  • Group IS1595
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
CP001715 ND Candidatus Accumulibacter
Candidatus Accumulibacter phosphatis UW-1
DNA section
IS Length : 1047 bp

Ends


IR Length : 21/24

IRL : CCTGATTagcaacaatcgtcagctgagcgcatctggtgagcccagcgggg
IRR : CCTGATTagcaatgagcgtcagctacccgaatcgagcgctggggccgcgg

Insertion site


Left flankDirect repeatRight flankDR Length
aaacgggcgaaaggaagaatgcatggcg8

DNA sequence

CCTGATTAGCAACAATCGTCAGCTGAGCGCATCTGGTGAGCCCAGCGGGGCTTAGCCTGGACTCCGTCACCACACGGAGAGCAGCACCATGGCCATGAAT
CGAATCCAGTTTCAACCCGGTTTGTCGATGCCGGAGTTCACCGAGCGCTTTGGAAGCGAGTCGCAGTGCGCCGCCGCCTTGGAGGCAGCCCGTTGGCCGA
ATGGGTTTTCCTGTCCGCGCTGCGGTGAGCACGCTCACTGTGTTCTGCGCGGGGGGTCGTGCAAGGTGTTTCAGTGCAACGCCTGTCGGCATCAAACCTC
GCTGATCGCCGGGACGGTGTTTCAGGGCACCAGGCTGCCGCTGACCGTGTGGTTCCTGGCGATCTACCTCATCAGCCAGGCCAAGACGGGTCTGTCGGCG
CTGGCGCTGAAGCGGTATCTGGGAGTGAGTTATCCCACCGCCTGGCTTATCCACCACAAGCTGATGCGGGCGATGGAACAGCGGGAAGAACGCTATGTGC
TCGATGGCCAGGTTCAGGTCGATGACGCTTACCTGGGCGGCGAACGGACGGGTGGCAAGGCGGGGCGCGGTTCGGAGAACAAGGTCCCGTTCGTGGCAGC
GGTCTCGTTCAGCGATGAGGGCCACCCCCTGCGTGCCAAACTCACGCTGGTTCCCGGTTTTACCCTGAAGGCAATTGCCGAGTGGGCCAAGAGCAACCTC
GCACCGGGATCGACGGTGCTGTCGGATGGTCTGGCTTGCTTCAACGCCGTCACCGACGCCGGCTGCGTTCATCAGCCGACCGTCGTCGCCGGGCGAAAGC
CCAAGGACTTGCCAGAGTTCAAGTGGGTTAACACGGTCCTGGGTAATCTCAAGACCAGCCTTTCGGGTTGCTACCACGCGCTTGCCTTTCGAAAGTATGG
CGCTCAGTACCTCGCGGCTTTCACCTACCGATTCAACCGCCGATTCGATCTCAGGACTCTGAACGAGAGGCTCCTGGTCGCCGCGGTAGCCTGCGCGCCG
CGGCCCCAGCGCTCGATTCGGGTAGCTGACGCTCATTGCTAATCAGG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
954 bp317 aa891042+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MAMNRIQFQPGLSMPEFTERFGSESQCAAALEAARWPNGFSCPRCGEHAHCVLRGGSCKVFQCNACRHQTSLIAGTVFQGTRLPLTVWFLAIYLISQAKT
GLSALALKRYLGVSYPTAWLIHHKLMRAMEQREERYVLDGQVQVDDAYLGGERTGGKAGRGSENKVPFVAAVSFSDEGHPLRAKLTLVPGFTLKAIAEWA
KSNLAPGSTVLSDGLACFNAVTDAGCVHQPTVVAGRKPKDLPEFKWVNTVLGNLKTSLSGCYHALAFRKYGAQYLAAFTYRFNRRFDLRTLNERLLVAAV
ACAPRPQRSIRVADAHC

 

Blast result :
Comments
ISCap3 is 83% aa similar to ISTni3.
References