ISDesu2
- Family IS1595
- Group IS1595
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
CP015080 | ND | Desulfuromonas sp. | Desulfuromonas sp. DDH964 |
DNA section
IS Length : 1059 bp
Ends
IR Length : 21/24
IRL : CCTGATTAGccctaattctcagctatgacacattctgtcgcacaggaagc
IRR : CCTGATTaggtccaattctcagctcggcgaagccaggcctcgggccgctt
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
CGGAGTATTGCA | ttagaaaa | AGGGCCGGTCCG | 8 |
GTAGTTTTTTCA | AGGTTTTT | TGCCGATTTCGG | 8 |
AGCGGAACCGCA | TTTTCTTT | TGAAAGTGAGCT | 8 |
GGCGGAGGGGCA | AAAAGAAT | TGGTGGTTTGGT | 8 |
AAATGTGCAACA | TTTAATTT | TATGGCGGGTGC | 8 |
GTCTTGTTCTCA | ATAGTTTT | TGTCGGGCAGCG | 8 |
AACGAGGGTGTA | AAAAAGAT | TGTGTAAATGGC | 8 |
GTAACAACAGCA | TTCCCTTT | TGACCGGGCGAT | 8 |
AAATCGAAGGCA | TTATGATT | TGTGATCGCAAA | 8 |
TCACATTATCCA | TAGAAATT | TGAAAGGCAGGT | 8 |
CGCCTGCCAGCA | AAAATAAT | TGCCGCCCTTTT | 8 |
CATCAGCGGATA | TTTTTTTA | TGACGACTCCCA | 8 |
DNA sequence
CCTGATTAGCCCTAATTCTCAGCTATGACACATTCTGTCGCACAGGAAGCATAGAGTTTGGCCATGGAACCCATGAAAAACAAGGAGGTTAGCACCCATG
GCCATCAATCGTATCCAGTTTCAACCGGGGCTGAGCTTGGCTGATTTTCTCAAAGACTACGGTACGGAAACCCAATGCGAGGCGATCCTTGAGCGCTCGC
GCTGGCCCCAAGGATTTGTCTGCCCAGCATGCAGTGCAAGCCGCGCGGTCCAGTTCCGGCGAGGACAGTCGAAAATCTTCCAGTGCAGTCGCTGTCGAAA
ACAGATCTCTCTGATTTCCGGAACGATTTTTCATGGGAGCAATCTACCGCTGACCCAGTGGTTTCTTGCCCTCTACTTTATGACACAAGGCAAGTCCGGC
CTGTCGATGCTGGAGATGAGACGTATGCTGGGCTTGAGCTACAAGGCGGCTTGGCGACTCAAGCACAAGCTCATGCAGGCGATGTTCGAACGCGAAGAGA
CAACGGTTCTGGGTCAGCGAGTCGAGATCGACGATGCCTACTTGGGCGGAGAACGCTCCGGCGGGAAAGTCGGTCGCGGTTCGGAGAACAAAGTTCCCTT
CATTGCGGCGGTGGAAACGAGTCATGACGGCCATCCGCTGCGAGCGGTTTTTAGCCGGGTGACGACCTTCAGCAGCCATGACGTTGATCAATGGGCCAAG
AATCATTTGGCACCGACGGCGCTGGTCGTTTCTGATGGCCTGAATTGCTTCCGCGCGGTCACCAAGACTGGGTGCTACCATCAGCGAGAGGTGGTTGGTG
ATCAACGCAGAAGTACCGACATGGGCTGCTTCCACTGGATCAACACCATCCTGGGCAATCTTAAGACGGCCATGGCCGGAACGTATCATGCGTTTGACTT
CGACAAATATGCGCATCGCTATCTGGCCGAGTTTCAGTACCGGTTCAACCGGCGGTTCGATCTGCGCAGCATGCTGCCAAGACTGCTTTTCGCCTGTGTC
TCAATCGGCAAGCGGCCCGAGGCCTGGCTTCGCCGAGCTGAGAATTGGACCTAATCAGG
GCCATCAATCGTATCCAGTTTCAACCGGGGCTGAGCTTGGCTGATTTTCTCAAAGACTACGGTACGGAAACCCAATGCGAGGCGATCCTTGAGCGCTCGC
GCTGGCCCCAAGGATTTGTCTGCCCAGCATGCAGTGCAAGCCGCGCGGTCCAGTTCCGGCGAGGACAGTCGAAAATCTTCCAGTGCAGTCGCTGTCGAAA
ACAGATCTCTCTGATTTCCGGAACGATTTTTCATGGGAGCAATCTACCGCTGACCCAGTGGTTTCTTGCCCTCTACTTTATGACACAAGGCAAGTCCGGC
CTGTCGATGCTGGAGATGAGACGTATGCTGGGCTTGAGCTACAAGGCGGCTTGGCGACTCAAGCACAAGCTCATGCAGGCGATGTTCGAACGCGAAGAGA
CAACGGTTCTGGGTCAGCGAGTCGAGATCGACGATGCCTACTTGGGCGGAGAACGCTCCGGCGGGAAAGTCGGTCGCGGTTCGGAGAACAAAGTTCCCTT
CATTGCGGCGGTGGAAACGAGTCATGACGGCCATCCGCTGCGAGCGGTTTTTAGCCGGGTGACGACCTTCAGCAGCCATGACGTTGATCAATGGGCCAAG
AATCATTTGGCACCGACGGCGCTGGTCGTTTCTGATGGCCTGAATTGCTTCCGCGCGGTCACCAAGACTGGGTGCTACCATCAGCGAGAGGTGGTTGGTG
ATCAACGCAGAAGTACCGACATGGGCTGCTTCCACTGGATCAACACCATCCTGGGCAATCTTAAGACGGCCATGGCCGGAACGTATCATGCGTTTGACTT
CGACAAATATGCGCATCGCTATCTGGCCGAGTTTCAGTACCGGTTCAACCGGCGGTTCGATCTGCGCAGCATGCTGCCAAGACTGCTTTTCGCCTGTGTC
TCAATCGGCAAGCGGCCCGAGGCCTGGCTTCGCCGAGCTGAGAATTGGACCTAATCAGG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
957 bp | 318 aa | 98 | 1054 | + | No |
Chemistry : DDE
ORF sequence :
MAINRIQFQPGLSLADFLKDYGTETQCEAILERSRWPQGFVCPACSASRAVQFRRGQSKIFQCSRCRKQISLISGTIFHGSNLPLTQWFLALYFMTQGKS
GLSMLEMRRMLGLSYKAAWRLKHKLMQAMFEREETTVLGQRVEIDDAYLGGERSGGKVGRGSENKVPFIAAVETSHDGHPLRAVFSRVTTFSSHDVDQWA
KNHLAPTALVVSDGLNCFRAVTKTGCYHQREVVGDQRRSTDMGCFHWINTILGNLKTAMAGTYHAFDFDKYAHRYLAEFQYRFNRRFDLRSMLPRLLFAC
VSIGKRPEAWLRRAENWT
GLSMLEMRRMLGLSYKAAWRLKHKLMQAMFEREETTVLGQRVEIDDAYLGGERSGGKVGRGSENKVPFIAAVETSHDGHPLRAVFSRVTTFSSHDVDQWA
KNHLAPTALVVSDGLNCFRAVTKTGCYHQREVVGDQRRSTDMGCFHWINTILGNLKTAMAGTYHAFDFDKYAHRYLAEFQYRFNRRFDLRSMLPRLLFAC
VSIGKRPEAWLRRAENWT
Blast result :
Comments
ISDesu2 is 79% aa similar to ISGlo2.
References