ISMsz1

  • Family IS1595
  • Group IS1595
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NZ_KE386490 ND Methylocaldum szegediense
Methylocaldum szegediense O-12
DNA section
IS Length : 1045 bp

Ends


IR Length : 15/16

IRL : CCTGATTAGCGATGAAGttcagtacaggctcacgctgtgagccactaggg
IRR : tctgaTTAGCGATGAACGTCAGCCAAGCGAAGTCGCCACTCGGCTCGGGG

Insertion site


Left flankDirect repeatRight flankDR Length
ACGCCATCTTCAATTTCTTTTTACAAGAAGAA8
TTCTAATGCTTTTTATTCTTTTTTTCACTTTTCACTTTTTCACTTT0

DNA sequence

CCTGATTAGCGATGAAGTTCAGTACAGGCTCACGCTGTGAGCCACTAGGGGGCTTAGACTAGGGGCATCGATCACAAAAGAGGTGTCCCATGCCGATGAA
CCGAGTGCAATTTCAAAAGGGGTTGTCGTTGGCCGAGTTTCTGGCCCAATACGGCCGTGAAGAGCAATGCGAAGCGGCACTGGAAGCCCTACGCTGGCCG
GAGGATTTCCGCTGCCCAGCCTGTGGTGGCGCGCACCACACGGCGTTCGAACGGAGCGGGCGAAAATACTGGCAATGCGGGCACTGCCGAAAGCAAACGA
CGCTGACCGCTGGGACGATCTTCGAAGCGACCAAGCTGCCGCTCTCTACCTGGTTTCTGGCGATGTATCTCCTGACCCAGGCCAAGAACAATGTCTCAGC
ACTGGAATTGATGCGTCATCTCGGAGTGTGTTATCGCACCGCCTGGCTGGTGAAACATAAGCTGATCCAGGTGATGGCGGAGCAGGAAGCGGATCGACAA
TTGACCGGGCGGGTCGAGATTGACGATGCTTACCTGGGCGGTGAACGGTCCGGGAAACGCGGACGGGGTTGCGAAAACAAAGTCAGCTTTGTGATGGCGG
TACAAACCACGGACGACGGTCACCCATGGTTTGTGCGCCTTGATCCCCTGCCGTTCACCCAGCAGGCGATCGCGGACTGGGCCCAACGCGCCTTGGCCCC
GTCGACCTACGCCCTCACCGATGGCCTGAGCGGGTTTCGGAGCGTGCACCAGGTCATCGCGGGGCATCAACGCCTGATTCTGGGCTCTGGGCGGCCATCG
GCCCAACATCCGGCGTTTCGTTGGGTCAACACGCTGTTGAGCAACCTGAAGACCGCCCTTTCCGGCACCTATCATGCGATCAAATTTAGGAAATATGCCA
AGCGATATCTGGCCGAGTTCCAATATCGTTTCAATCGGCGTTTCGATCTCAAAATTCTGCTTCGACGGCTGGCCCGTGCTGCGATGTTGACTCAACCCCG
AGCCGAGTGGCGACTTCGCTTGGCTGACGTTCATCGCTAATCAGA
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
951 bp316 aa901040+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MPMNRVQFQKGLSLAEFLAQYGREEQCEAALEALRWPEDFRCPACGGAHHTAFERSGRKYWQCGHCRKQTTLTAGTIFEATKLPLSTWFLAMYLLTQAKN
NVSALELMRHLGVCYRTAWLVKHKLIQVMAEQEADRQLTGRVEIDDAYLGGERSGKRGRGCENKVSFVMAVQTTDDGHPWFVRLDPLPFTQQAIADWAQR
ALAPSTYALTDGLSGFRSVHQVIAGHQRLILGSGRPSAQHPAFRWVNTLLSNLKTALSGTYHAIKFRKYAKRYLAEFQYRFNRRFDLKILLRRLARAAML
TQPRAEWRLRLADVHR

 

Blast result :
Comments
ISMsz1 is 74% aa similar to ISCARN94.
References