ISVa14

  • Family IS4
  • Group ISH8
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
ND Vibrio anguillarum
Vibrio anguillarum serovar O2 (VIB12)
Vibrio anguillarum 90-11-286
DNA section
IS Length : 1390 bp

Ends


IR Length : 18/24

IRL : catagacaggatcttaagagctaacgtgtttatttagatagaaaaaaggc
IRR : catagactgaaccttaagcattaagcccagcgtaaattccgtctaaagta

Insertion site


Left flankDirect repeatRight flankDR Length
AACCCTACAGGTTTAGTTTGTCGTTCTATCGATTTAAGCTTCTCGA10
CAGGCTTTGGCTGATTCTTGATTCACTTAACCAATATTTTGATTGT10
GATAACCTAACCTTATTTACTTAACCTTAACTGTAATCTGGCCAAA10
ATTCTAGTCCTTATTACTTCCTGTAAGGATTAA10

DNA sequence

CATAGACAGGATCTTAAGAGCTAACGTGTTTATTTAGATAGAAAAAAGGCTTCATTTATGATCAGATAATCGTCGCCAAACAAACCACCTACACCAACCG
TGAAGCCGATGACGATTATCTCCTTACAGAAGCAATTTAAGCAATTCTTTAATGCTGACACCCTTCAAAAAATGGCGAAAAGTACAGGCCTGATGAAACG
GTGTCGGGCGATATTACCCGAGCAGCTAGTCATTAGCTTAGTGGCCGCGTTAAGCAAAGGAAACTGCACTTCCATCGCGGATTTACAGCGACAATTCAAT
GGTATGTGCTTGAGCCCTGAAGATGCCGTGGCATACAAGCCTTACCATAACCAGTTGAGGAAAATAGAGTTTCCGAATTTTATGCGGCAACTTGTCATGC
GAGCAATAGCTCAATTTGCTCGCCAGCAGAATGTCGGCTTACCAGATAAACTCGACACTTTTGATGATGTATTACTTCAAGATGGCAGTTCTTTCCACAT
CCATCGTGACCTGGCGGATGTTTATCCGAGTCGATTTAAACGTAACCCTGCGGCGGTTGAATGTCATATGACAATGTCGTTGAAAAGCTTTTCTCCAGTC
GCGATGAGCATCAGCGCTGATACGGCATCAGAAAGAGATTTTTTACCTGAGCCCAAAACGATGAACAACAAATTGCTGTTAGCCGACGCAGGGTATCCTG
ATTTCCACTTTTTTCGCGAGCTTGAACAGCATGGCGGGTTCTATATTGTCCGAGGTGCGAAGTCTCTAAATCCTATGATTATTGAGGCGAGAAACGGTCG
AGGGCGACTTCTGCCTAAGCTAGAAGGGAGGAGGCTGAAAGACATTACTCGAGGCACCAACCGTTCGCAAGTCCTTGACCTAAAAGTCCGTCGAGGTAAA
CAAGAGTTTAGAGTTGTGCGACGTTGGTTTGCCGAAGAAAAACGATTCTGCATTTGGATAACTAACTTACCTTCAGACACCTATACTGCCGATGACATCA
TGGCGATCTACCGCTGTCGATGGCAGGTGGAGCTGCTTTTTAAAGAGTTAAAGTCTCACACCAACTGGCAACGATTTGTCACCGCACAAAAGGCCATCGT
TGATGGGCTAATCTGGGCCAGTTTACTTGCGCTGATCATTAGGCGCAGTATTGCACTTCAGATAATGCCCTCAGTCTCACTATTTAAAGCGGCAAAAAAT
GTGGATGTCTGGCTGTTGCCAATATTTGAATGTATCAGCCACAGAGCATGGTCAGAAATCAGCAATAAACTCGAATGGGCTGCCAGTTATATATCAATGA
ACGCTCAAAAGTCCGCTCAGAGGAAGTCTAAAGAAAACATTACTTTAGACGGAATTTACGCTGGGCTTAATGCTTAAGGTTCAGTCTATG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1269 bp422 aa1091377+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MTIISLQKQFKQFFNADTLQKMAKSTGLMKRCRAILPEQLVISLVAALSKGNCTSIADLQRQFNGMCLSPEDAVAYKPYHNQLRKIEFPNFMRQLVMRAI
AQFARQQNVGLPDKLDTFDDVLLQDGSSFHIHRDLADVYPSRFKRNPAAVECHMTMSLKSFSPVAMSISADTASERDFLPEPKTMNNKLLLADAGYPDFH
FFRELEQHGGFYIVRGAKSLNPMIIEARNGRGRLLPKLEGRRLKDITRGTNRSQVLDLKVRRGKQEFRVVRRWFAEEKRFCIWITNLPSDTYTADDIMAI
YRCRWQVELLFKELKSHTNWQRFVTAQKAIVDGLIWASLLALIIRRSIALQIMPSVSLFKAAKNVDVWLLPIFECISHRAWSEISNKLEWAASYISMNAQ
KSAQRKSKENITLDGIYAGLNA

 

Blast result :
Comments
ISVa14 is 69% aa similar to ISApu2.
According to protein blast (NCBI; accession numbers WP_064625392/WP_069212220) this record represents a single, non-redundant, protein sequence which may be annotated on many different RefSeq genomes from the same, or different, species.
References
1] Holm K.O. (2016) Direct submission
2) Busschaert P. et al (2014) Journal of Fish Diseases (doi:10.1111/jfd.12290)
3] VIB12 [in Austin B. et al (1995) Systematic and Applied Microbiology 18: 285-302