ISVa14
- Family IS4
- Group ISH8
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
ND | Vibrio anguillarum | Vibrio anguillarum serovar O2 (VIB12) Vibrio anguillarum 90-11-286 |
DNA section
IS Length : 1390 bp
Ends
IR Length : 18/24
IRL : catagacaggatcttaagagctaacgtgtttatttagatagaaaaaaggc
IRR : catagactgaaccttaagcattaagcccagcgtaaattccgtctaaagta
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
AACCCTACAGGTTTAGTT | TGTCGTTCTA | TCGATTTAAGCTTCTCGA | 10 |
CAGGCTTTGGCTGATTCT | TGATTCACTT | AACCAATATTTTGATTGT | 10 |
GATAACCTAACCTTATTT | ACTTAACCTT | AACTGTAATCTGGCCAAA | 10 |
ATTCT | AGTCCTTATT | ACTTCCTGTAAGGATTAA | 10 |
DNA sequence
CATAGACAGGATCTTAAGAGCTAACGTGTTTATTTAGATAGAAAAAAGGCTTCATTTATGATCAGATAATCGTCGCCAAACAAACCACCTACACCAACCG
TGAAGCCGATGACGATTATCTCCTTACAGAAGCAATTTAAGCAATTCTTTAATGCTGACACCCTTCAAAAAATGGCGAAAAGTACAGGCCTGATGAAACG
GTGTCGGGCGATATTACCCGAGCAGCTAGTCATTAGCTTAGTGGCCGCGTTAAGCAAAGGAAACTGCACTTCCATCGCGGATTTACAGCGACAATTCAAT
GGTATGTGCTTGAGCCCTGAAGATGCCGTGGCATACAAGCCTTACCATAACCAGTTGAGGAAAATAGAGTTTCCGAATTTTATGCGGCAACTTGTCATGC
GAGCAATAGCTCAATTTGCTCGCCAGCAGAATGTCGGCTTACCAGATAAACTCGACACTTTTGATGATGTATTACTTCAAGATGGCAGTTCTTTCCACAT
CCATCGTGACCTGGCGGATGTTTATCCGAGTCGATTTAAACGTAACCCTGCGGCGGTTGAATGTCATATGACAATGTCGTTGAAAAGCTTTTCTCCAGTC
GCGATGAGCATCAGCGCTGATACGGCATCAGAAAGAGATTTTTTACCTGAGCCCAAAACGATGAACAACAAATTGCTGTTAGCCGACGCAGGGTATCCTG
ATTTCCACTTTTTTCGCGAGCTTGAACAGCATGGCGGGTTCTATATTGTCCGAGGTGCGAAGTCTCTAAATCCTATGATTATTGAGGCGAGAAACGGTCG
AGGGCGACTTCTGCCTAAGCTAGAAGGGAGGAGGCTGAAAGACATTACTCGAGGCACCAACCGTTCGCAAGTCCTTGACCTAAAAGTCCGTCGAGGTAAA
CAAGAGTTTAGAGTTGTGCGACGTTGGTTTGCCGAAGAAAAACGATTCTGCATTTGGATAACTAACTTACCTTCAGACACCTATACTGCCGATGACATCA
TGGCGATCTACCGCTGTCGATGGCAGGTGGAGCTGCTTTTTAAAGAGTTAAAGTCTCACACCAACTGGCAACGATTTGTCACCGCACAAAAGGCCATCGT
TGATGGGCTAATCTGGGCCAGTTTACTTGCGCTGATCATTAGGCGCAGTATTGCACTTCAGATAATGCCCTCAGTCTCACTATTTAAAGCGGCAAAAAAT
GTGGATGTCTGGCTGTTGCCAATATTTGAATGTATCAGCCACAGAGCATGGTCAGAAATCAGCAATAAACTCGAATGGGCTGCCAGTTATATATCAATGA
ACGCTCAAAAGTCCGCTCAGAGGAAGTCTAAAGAAAACATTACTTTAGACGGAATTTACGCTGGGCTTAATGCTTAAGGTTCAGTCTATG
TGAAGCCGATGACGATTATCTCCTTACAGAAGCAATTTAAGCAATTCTTTAATGCTGACACCCTTCAAAAAATGGCGAAAAGTACAGGCCTGATGAAACG
GTGTCGGGCGATATTACCCGAGCAGCTAGTCATTAGCTTAGTGGCCGCGTTAAGCAAAGGAAACTGCACTTCCATCGCGGATTTACAGCGACAATTCAAT
GGTATGTGCTTGAGCCCTGAAGATGCCGTGGCATACAAGCCTTACCATAACCAGTTGAGGAAAATAGAGTTTCCGAATTTTATGCGGCAACTTGTCATGC
GAGCAATAGCTCAATTTGCTCGCCAGCAGAATGTCGGCTTACCAGATAAACTCGACACTTTTGATGATGTATTACTTCAAGATGGCAGTTCTTTCCACAT
CCATCGTGACCTGGCGGATGTTTATCCGAGTCGATTTAAACGTAACCCTGCGGCGGTTGAATGTCATATGACAATGTCGTTGAAAAGCTTTTCTCCAGTC
GCGATGAGCATCAGCGCTGATACGGCATCAGAAAGAGATTTTTTACCTGAGCCCAAAACGATGAACAACAAATTGCTGTTAGCCGACGCAGGGTATCCTG
ATTTCCACTTTTTTCGCGAGCTTGAACAGCATGGCGGGTTCTATATTGTCCGAGGTGCGAAGTCTCTAAATCCTATGATTATTGAGGCGAGAAACGGTCG
AGGGCGACTTCTGCCTAAGCTAGAAGGGAGGAGGCTGAAAGACATTACTCGAGGCACCAACCGTTCGCAAGTCCTTGACCTAAAAGTCCGTCGAGGTAAA
CAAGAGTTTAGAGTTGTGCGACGTTGGTTTGCCGAAGAAAAACGATTCTGCATTTGGATAACTAACTTACCTTCAGACACCTATACTGCCGATGACATCA
TGGCGATCTACCGCTGTCGATGGCAGGTGGAGCTGCTTTTTAAAGAGTTAAAGTCTCACACCAACTGGCAACGATTTGTCACCGCACAAAAGGCCATCGT
TGATGGGCTAATCTGGGCCAGTTTACTTGCGCTGATCATTAGGCGCAGTATTGCACTTCAGATAATGCCCTCAGTCTCACTATTTAAAGCGGCAAAAAAT
GTGGATGTCTGGCTGTTGCCAATATTTGAATGTATCAGCCACAGAGCATGGTCAGAAATCAGCAATAAACTCGAATGGGCTGCCAGTTATATATCAATGA
ACGCTCAAAAGTCCGCTCAGAGGAAGTCTAAAGAAAACATTACTTTAGACGGAATTTACGCTGGGCTTAATGCTTAAGGTTCAGTCTATG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1269 bp | 422 aa | 109 | 1377 | + | No |
Chemistry : DDE
ORF sequence :
MTIISLQKQFKQFFNADTLQKMAKSTGLMKRCRAILPEQLVISLVAALSKGNCTSIADLQRQFNGMCLSPEDAVAYKPYHNQLRKIEFPNFMRQLVMRAI
AQFARQQNVGLPDKLDTFDDVLLQDGSSFHIHRDLADVYPSRFKRNPAAVECHMTMSLKSFSPVAMSISADTASERDFLPEPKTMNNKLLLADAGYPDFH
FFRELEQHGGFYIVRGAKSLNPMIIEARNGRGRLLPKLEGRRLKDITRGTNRSQVLDLKVRRGKQEFRVVRRWFAEEKRFCIWITNLPSDTYTADDIMAI
YRCRWQVELLFKELKSHTNWQRFVTAQKAIVDGLIWASLLALIIRRSIALQIMPSVSLFKAAKNVDVWLLPIFECISHRAWSEISNKLEWAASYISMNAQ
KSAQRKSKENITLDGIYAGLNA
AQFARQQNVGLPDKLDTFDDVLLQDGSSFHIHRDLADVYPSRFKRNPAAVECHMTMSLKSFSPVAMSISADTASERDFLPEPKTMNNKLLLADAGYPDFH
FFRELEQHGGFYIVRGAKSLNPMIIEARNGRGRLLPKLEGRRLKDITRGTNRSQVLDLKVRRGKQEFRVVRRWFAEEKRFCIWITNLPSDTYTADDIMAI
YRCRWQVELLFKELKSHTNWQRFVTAQKAIVDGLIWASLLALIIRRSIALQIMPSVSLFKAAKNVDVWLLPIFECISHRAWSEISNKLEWAASYISMNAQ
KSAQRKSKENITLDGIYAGLNA
Blast result :
Comments
ISVa14 is 69% aa similar to ISApu2.
According to protein blast (NCBI; accession numbers WP_064625392/WP_069212220) this record represents a single, non-redundant, protein sequence which may be annotated on many different RefSeq genomes from the same, or different, species.
According to protein blast (NCBI; accession numbers WP_064625392/WP_069212220) this record represents a single, non-redundant, protein sequence which may be annotated on many different RefSeq genomes from the same, or different, species.
References
1] Holm K.O. (2016) Direct submission
2) Busschaert P. et al (2014) Journal of Fish Diseases (doi:10.1111/jfd.12290)
3] VIB12 [in Austin B. et al (1995) Systematic and Applied Microbiology 18: 285-302
2) Busschaert P. et al (2014) Journal of Fish Diseases (doi:10.1111/jfd.12290)
3] VIB12 [in Austin B. et al (1995) Systematic and Applied Microbiology 18: 285-302