ISVa13

  • Family ISAs1
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
ND Vibrio anguillarum
Vibrio anguillarum serovar O2 (VIB12)
DNA section
IS Length : 1235 bp

Ends


IR Length : 17/21

IRL : cagggtgagatcgcgaacgttttttatactaataatggatcgatttgacg
IRR : cagggtgagagcgtgaatgctcacttttcactcagtgcctaaattctcag

Insertion site


Left flankDirect repeatRight flankDR Length
CCTTGTAACACGATGTCAATAGGTTTGCGGGGGG0
CGATGTCATTCCCCTCTGCATCCCTCTGCATCAAAGGTCAATT10
ATGTGGATAACTCGGCTGAGTCTTTCTACGTT10
TTTTTGAACAGCATTTACTCTGCGACTACAGA10
TTTTCAATAGAATCAGGATCA10
ATGTTTAATGGCTACATCCCTAGAAAGCGCAT10

DNA sequence

CAGGGTGAGATCGCGAACGTTTTTTATACTAATAATGGATCGATTTGACGATCACTTTTAGGTGTGATCATATACTCTCTTTTTAGGAGACTATGATGCA
CGACGCCTTTACAAAACACTTCATCTCGTTAGAAGACCCAAGACAATCTGCAAAGGTGAGTTATCCACTCTTTGATGTTTTGTTCCTGACTGTCTGCGCT
GTTATCACGGGAGCAGAAGGTTGGGAAGATATTGAAGACTTTGGTCGTGCTCATCTGGATTGGTTGCAGGATAAAGGGCTCTTCAAAGAAGGTTTACCTG
TACATGATACGATTGCTCGCCTTATTTCGCGTCTTGACGCTGAGCAATTTCAGCGCTGCTTCGTTCGTTGGGTCAACAGCCTTTGTGAAGCAACTGAAGG
TCAGCTCATCGCTATTGATGGTAAGGTCCTTAGAGGCTCTTACGACCGTAACTCAAGGCAGTCGACCATACATATGGTGAGCGCGTTTTGTACTCAGAAT
AAACTGGTGCTTGGTCAGGTTAAAACTGACGCGAAGTCGAATGAAATCACAGCCATACCTGAGCTATTAAAGCTCTTAGAAATAAAGGGTTGCCTCATTT
CTATTGATGCTATTGCCTGCCAAAAGAGCATTGCTGAAACGATTGTTGAAGGCGGTGGGGATTACTTACTTGCCGTCAAAGGAAACCAGGAAAACCTATA
TAAAGCGGTGAAGTCTGAGCTAAACAGTGCTGACGGGGAAACAGTTAAATCACAAACGGAGACCAAGCATGGTCGAATAGAAGTGCGAGAGTATCGAGTC
CTACCGGCGCCAAAGTCTGAGCCATTTAGTGACTGGTTTGGCATTAAAAGCATCGGAGAAGCGATAAGCTTTAGATACGATAAATCAGGCAAAAAATGCT
CTTTGGAGTACCGATATTACATCAGCTCTAGAGAGTTGAGTGCGCAAGAATTTGCAATAGGTGTACGAGATCATTGGGGAATAGAGAATAGCCTTCACTG
GGTACTCGACACGGCATTTAGTGAAGATGATTGTCAGATTTATCGTGAAAACGCACCGCAAGTCCTTGCTGCAATTCGTCATATGGCAATCAACATGTTG
AGAAATGACACTTCACGCAAAGCAAGTATCCGAAGGAAGACCAAAATGGCCGCAATGGAAATTAGTTACTTAGAGCAAATTCTTGCTGAGAATTTAGGCA
CTGAGTGAAAAGTGAGCATTCACGCTCTCACCCTG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1116 bp371 aa931208+No
ORF function : Transposase
Chemistry : Unknow

ORF sequence :

MMHDAFTKHFISLEDPRQSAKVSYPLFDVLFLTVCAVITGAEGWEDIEDFGRAHLDWLQDKGLFKEGLPVHDTIARLISRLDAEQFQRCFVRWVNSLCEA
TEGQLIAIDGKVLRGSYDRNSRQSTIHMVSAFCTQNKLVLGQVKTDAKSNEITAIPELLKLLEIKGCLISIDAIACQKSIAETIVEGGGDYLLAVKGNQE
NLYKAVKSELNSADGETVKSQTETKHGRIEVREYRVLPAPKSEPFSDWFGIKSIGEAISFRYDKSGKKCSLEYRYYISSRELSAQEFAIGVRDHWGIENS
LHWVLDTAFSEDDCQIYRENAPQVLAAIRHMAINMLRNDTSRKASIRRKTKMAAMEISYLEQILAENLGTE

 

Blast result :
Comments
ISVa13 is 77% aa similar to ISAeme1.
References
1] Holm K.O. (2016) Direct submission to ISfinder
2) Busschaert P. et al (2014) Journal of Fish Diseases (doi:10.1111/jfd.12290)
3] VIB12 [in Austin B. et al (1995) Systematic and Applied Microbiology 18: 285-302