ISVa13
- Family ISAs1
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
ND | Vibrio anguillarum | Vibrio anguillarum serovar O2 (VIB12) |
DNA section
IS Length : 1235 bp
Ends
IR Length : 17/21
IRL : cagggtgagatcgcgaacgttttttatactaataatggatcgatttgacg
IRR : cagggtgagagcgtgaatgctcacttttcactcagtgcctaaattctcag
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
CCTTGTAACACGATGTCAATAG | GTTTGCGGGGGG | 0 | |
CGATGTCATTCCCCTCTGCATC | CCTCTGCATC | AAAGGTCAATT | 10 |
ATGTGGATAA | CTCGGCTGAG | TCTTTCTACGTT | 10 |
TTTTTGAACA | GCATTTACTC | TGCGACTACAGA | 10 |
TTTTCAATAG | AATCAGGATC | A | 10 |
ATGTTTAATG | GCTACATCCC | TAGAAAGCGCAT | 10 |
DNA sequence
CAGGGTGAGATCGCGAACGTTTTTTATACTAATAATGGATCGATTTGACGATCACTTTTAGGTGTGATCATATACTCTCTTTTTAGGAGACTATGATGCA
CGACGCCTTTACAAAACACTTCATCTCGTTAGAAGACCCAAGACAATCTGCAAAGGTGAGTTATCCACTCTTTGATGTTTTGTTCCTGACTGTCTGCGCT
GTTATCACGGGAGCAGAAGGTTGGGAAGATATTGAAGACTTTGGTCGTGCTCATCTGGATTGGTTGCAGGATAAAGGGCTCTTCAAAGAAGGTTTACCTG
TACATGATACGATTGCTCGCCTTATTTCGCGTCTTGACGCTGAGCAATTTCAGCGCTGCTTCGTTCGTTGGGTCAACAGCCTTTGTGAAGCAACTGAAGG
TCAGCTCATCGCTATTGATGGTAAGGTCCTTAGAGGCTCTTACGACCGTAACTCAAGGCAGTCGACCATACATATGGTGAGCGCGTTTTGTACTCAGAAT
AAACTGGTGCTTGGTCAGGTTAAAACTGACGCGAAGTCGAATGAAATCACAGCCATACCTGAGCTATTAAAGCTCTTAGAAATAAAGGGTTGCCTCATTT
CTATTGATGCTATTGCCTGCCAAAAGAGCATTGCTGAAACGATTGTTGAAGGCGGTGGGGATTACTTACTTGCCGTCAAAGGAAACCAGGAAAACCTATA
TAAAGCGGTGAAGTCTGAGCTAAACAGTGCTGACGGGGAAACAGTTAAATCACAAACGGAGACCAAGCATGGTCGAATAGAAGTGCGAGAGTATCGAGTC
CTACCGGCGCCAAAGTCTGAGCCATTTAGTGACTGGTTTGGCATTAAAAGCATCGGAGAAGCGATAAGCTTTAGATACGATAAATCAGGCAAAAAATGCT
CTTTGGAGTACCGATATTACATCAGCTCTAGAGAGTTGAGTGCGCAAGAATTTGCAATAGGTGTACGAGATCATTGGGGAATAGAGAATAGCCTTCACTG
GGTACTCGACACGGCATTTAGTGAAGATGATTGTCAGATTTATCGTGAAAACGCACCGCAAGTCCTTGCTGCAATTCGTCATATGGCAATCAACATGTTG
AGAAATGACACTTCACGCAAAGCAAGTATCCGAAGGAAGACCAAAATGGCCGCAATGGAAATTAGTTACTTAGAGCAAATTCTTGCTGAGAATTTAGGCA
CTGAGTGAAAAGTGAGCATTCACGCTCTCACCCTG
CGACGCCTTTACAAAACACTTCATCTCGTTAGAAGACCCAAGACAATCTGCAAAGGTGAGTTATCCACTCTTTGATGTTTTGTTCCTGACTGTCTGCGCT
GTTATCACGGGAGCAGAAGGTTGGGAAGATATTGAAGACTTTGGTCGTGCTCATCTGGATTGGTTGCAGGATAAAGGGCTCTTCAAAGAAGGTTTACCTG
TACATGATACGATTGCTCGCCTTATTTCGCGTCTTGACGCTGAGCAATTTCAGCGCTGCTTCGTTCGTTGGGTCAACAGCCTTTGTGAAGCAACTGAAGG
TCAGCTCATCGCTATTGATGGTAAGGTCCTTAGAGGCTCTTACGACCGTAACTCAAGGCAGTCGACCATACATATGGTGAGCGCGTTTTGTACTCAGAAT
AAACTGGTGCTTGGTCAGGTTAAAACTGACGCGAAGTCGAATGAAATCACAGCCATACCTGAGCTATTAAAGCTCTTAGAAATAAAGGGTTGCCTCATTT
CTATTGATGCTATTGCCTGCCAAAAGAGCATTGCTGAAACGATTGTTGAAGGCGGTGGGGATTACTTACTTGCCGTCAAAGGAAACCAGGAAAACCTATA
TAAAGCGGTGAAGTCTGAGCTAAACAGTGCTGACGGGGAAACAGTTAAATCACAAACGGAGACCAAGCATGGTCGAATAGAAGTGCGAGAGTATCGAGTC
CTACCGGCGCCAAAGTCTGAGCCATTTAGTGACTGGTTTGGCATTAAAAGCATCGGAGAAGCGATAAGCTTTAGATACGATAAATCAGGCAAAAAATGCT
CTTTGGAGTACCGATATTACATCAGCTCTAGAGAGTTGAGTGCGCAAGAATTTGCAATAGGTGTACGAGATCATTGGGGAATAGAGAATAGCCTTCACTG
GGTACTCGACACGGCATTTAGTGAAGATGATTGTCAGATTTATCGTGAAAACGCACCGCAAGTCCTTGCTGCAATTCGTCATATGGCAATCAACATGTTG
AGAAATGACACTTCACGCAAAGCAAGTATCCGAAGGAAGACCAAAATGGCCGCAATGGAAATTAGTTACTTAGAGCAAATTCTTGCTGAGAATTTAGGCA
CTGAGTGAAAAGTGAGCATTCACGCTCTCACCCTG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1116 bp | 371 aa | 93 | 1208 | + | No |
Chemistry : Unknow
ORF sequence :
MMHDAFTKHFISLEDPRQSAKVSYPLFDVLFLTVCAVITGAEGWEDIEDFGRAHLDWLQDKGLFKEGLPVHDTIARLISRLDAEQFQRCFVRWVNSLCEA
TEGQLIAIDGKVLRGSYDRNSRQSTIHMVSAFCTQNKLVLGQVKTDAKSNEITAIPELLKLLEIKGCLISIDAIACQKSIAETIVEGGGDYLLAVKGNQE
NLYKAVKSELNSADGETVKSQTETKHGRIEVREYRVLPAPKSEPFSDWFGIKSIGEAISFRYDKSGKKCSLEYRYYISSRELSAQEFAIGVRDHWGIENS
LHWVLDTAFSEDDCQIYRENAPQVLAAIRHMAINMLRNDTSRKASIRRKTKMAAMEISYLEQILAENLGTE
TEGQLIAIDGKVLRGSYDRNSRQSTIHMVSAFCTQNKLVLGQVKTDAKSNEITAIPELLKLLEIKGCLISIDAIACQKSIAETIVEGGGDYLLAVKGNQE
NLYKAVKSELNSADGETVKSQTETKHGRIEVREYRVLPAPKSEPFSDWFGIKSIGEAISFRYDKSGKKCSLEYRYYISSRELSAQEFAIGVRDHWGIENS
LHWVLDTAFSEDDCQIYRENAPQVLAAIRHMAINMLRNDTSRKASIRRKTKMAAMEISYLEQILAENLGTE
Blast result :
Comments
ISVa13 is 77% aa similar to ISAeme1.
References
1] Holm K.O. (2016) Direct submission to ISfinder
2) Busschaert P. et al (2014) Journal of Fish Diseases (doi:10.1111/jfd.12290)
3] VIB12 [in Austin B. et al (1995) Systematic and Applied Microbiology 18: 285-302
2) Busschaert P. et al (2014) Journal of Fish Diseases (doi:10.1111/jfd.12290)
3] VIB12 [in Austin B. et al (1995) Systematic and Applied Microbiology 18: 285-302