ISPda2

  • Family IS91
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
KP100338 ND Photobacterium damselae
Photobacterium damselae
Photobacterium damselae subsp. piscicida plasmid pPHDP70
Photobacterium damselae subsp. piscicida strain DI21 genome
Photobacterium damselae subsp. piscicida strain L091106-03H genome
DNA section
IS Length : 1821 bp

Ends


oriIS : AAGGTTAGGAATTTCAATTCCTAACCACTCTGACAGCAATACTGAAAAATCAATCAGTAATCGTCTTTCTTATGACTTAGCCGACTAAAATAGGTTACTT II struct. : No
terIS : CCCGCTAAATTAGCGAGCATAAAGGGCTAAAAGTGAGGTTCTAGGCCGCAGTTTTCTATTTCAGGTTGAGATATCTGGCTCCAGCCGAAGGCTGGCTACT II struct. : No

Insertion site


Left flankLE cleavage siteRight flankRE cleavage site
AAGGTTAGGA ATTTGTTC GAAGGTTTAA
TGTGATTCTT CTTGGTTC TCCCAAGAAG
AATTGGATTA CTTGGTTC TTCTGTCAGC

DNA sequence

AAGGTTAGGAATTTCAATTCCTAACCACTCTGACAGCAATACTGAAAAATCAATCAGTAATCGTCTTTCTTATGACTTAGCCGACTAAAATAGGTTACTT
TTGAGTGTTTTCTATACTGTTTTTGGCTTTTTGCCATATTTCAGGCAGATCATCCCTAAAGACTGTAACGAAGTCGTCGTTTTTCCCGTATCGTTGCTTT
TCTCAAAGTAACTAACTCATGCCCTTTCAGCCCCATTTCCATCTTCACAAAGCACATGCGACCACTACATAGAATACATTTGTACGGGTCTATGCCTACC
AGGTGATGCATCATTTGCGCGTAATTCAATGGTTTTGGCTCTACAGGCTCTTCCTGATCCAGTAAGTCATAAACTAACGGTAAGGCTTCTCCCCGTTTTC
TGTTTGACAGAAAACCGTAATACCTGATGGCTCTAAAATTCTTTTCTGCGGGGATATGCGAGACTAACCGATCGATCATCTCTATTTGACTACGGACCAA
TGTCTTATAGCAATTATCTCTATGATCTTTATAGACAAAGTGAACATCACCACCCTGGTAATGACGTAGGCGAGAAGCCGCTATTGGCGGCCGCTTAAAA
TAGCGGCCTAGGTACCTAACGGTTGGACCGACATCTTCTGTCTTTTTGGCTAAGTGAATACGCCACTTTCGACTGTATTGACTAGAGAGAAACTGACTCC
ATCCATGAAAGTCTCTAATATGTTGATAGTTATCATGTTTAGTGTTCAAGGCATTATAGTGGTCTCGTAAGAACGAGACCACTTGCTGCTTCCAATGCTG
CTCTACCATCGCAGCATTAAAGTAGATATTTCCCCATCGCTTAGTTTTGAGATTTACGCCTCCACGTGTGACTGATAGATGGAAATGGACATTCCAATTA
AGTTGACGACCAAATGTATGGACTACACAGAATAGGCCAATCTCTATTCCCCGTTTCTTTGCAAAACTCAAGAATGCTGATACCGCACAGCGGTATAACA
GATTGATTAACCATGGATTAAGTCGGAATATGGGCCATAACTTATCGGGCATCGTTAAGGTCATGTGTTGATATTCACATTTGGGCAAGATGGATAGCTG
CTTCGCTATCCATTTTTCTGTCAGCATTACTCCACAAGAGCTACAAGCTTTACTCTTACAAGAGTTATAGATGACTTTGCGGTGCTCACAATAAGGGTTT
TCACATTCGTAGTGCTTACTGCCCACTTTGCTGGTACCGCAAGCGAGCATTTTTTCTATACACTCTATTTGATTGGTGGTGATGTTATCGCCACAATGCG
TGAGATATTTTTCCCAAGCCTCATCTTTATTAAAGATGAGTTTGGTGGCTCTAGGAACGTGCATATCAGCAATTAGTAAGGCGTTGCACCATCTCGCTCT
GCGATATGAGCAAGCGAGATTAATACTTCATGTAATTTGAATGTAGTAGTCGATGTGTCACCAAACTTATCAATAAGATATTGATAAATTAATGCAATTT
CTTCGTCGTGATCTTTTGGAGGAGCAATATCATATTGGGTATTTAGCAACTGAATGACATTATCCATGGTGGTCTCATATTGCTCATAGTTGTCAAAAGC
AGATGAAGCCTGAACCTGACGACATTTTTTTGTTGGTTTCTTCTTCTTTTTTCTAGGTTTGTTACTCATAGGATGTAGTCAATCCAGTAATGGTGATTTG
TACTGATATAAAATAAGAATGCCCGCTAAATTAGCGAGCATAAAGGGCTAAAAGTGAGGTTCTAGGCCGCAGTTTTCTATTTCAGGTTGAGATATCTGGC
TCCAGCCGAAGGCTGGCTACT
Protein section
ORF number : 2

 

ORF 1
LengthBeginEndStrandFusion ORF
1209 bp402 aa1561364-No
ORF function : Transposase
Chemistry : Y2

ORF sequence :

MHVPRATKLIFNKDEAWEKYLTHCGDNITTNQIECIEKMLACGTSKVGSKHYECENPYCEHRKVIYNSCKSKACSSCGVMLTEKWIAKQLSILPKCEYQH
MTLTMPDKLWPIFRLNPWLINLLYRCAVSAFLSFAKKRGIEIGLFCVVHTFGRQLNWNVHFHLSVTRGGVNLKTKRWGNIYFNAAMVEQHWKQQVVSFLR
DHYNALNTKHDNYQHIRDFHGWSQFLSSQYSRKWRIHLAKKTEDVGPTVRYLGRYFKRPPIAASRLRHYQGGDVHFVYKDHRDNCYKTLVRSQIEMIDRL
VSHIPAEKNFRAIRYYGFLSNRKRGEALPLVYDLLDQEEPVEPKPLNYAQMMHHLVGIDPYKCILCSGRMCFVKMEMGLKGHELVTLRKATIREKRRLRY
SL

 

Blast result :
ORF 2
LengthBeginEndStrandFusion ORF
297 bp98 aa13731669-No
ORF function : Passenger Gene
Annotation : Hypothetical proteinDescription :

ORF sequence :

MSNKPRKKKKKPTKKCRQVQASSAFDNYEQYETTMDNVIQLLNTQYDIAPPKDHDEEIALIYQYLIDKFGDTSTTTFKLHEVLISLAHIAERDGATPY

 

Blast result :
Comments
ISPda2 is 66% (Transposase) aa similar to ISVa3.
References
1] Miguel Balado (2016) Direct submission
2] Osorio,C.R., Lemos,M.L. and Braun,V. (2004) Biometals 17 (6), 725-733.
3] Osorio,C.R., Juiz-Rio,S. and Lemos,M.L.(2006) Microbiology (Reading, Engl.) 152 (PT 11), 3327-3341.
4] Osorio,C.R., Rivas,A.J., Balado,M., Fuentes-Monteverde,J.C., Rodriguez,J., Jimenez,C., Lemos,M.L. and Waldor,M.K. (2015) Appl. Environ. Microbiol. 81 (17), 5867-5879.