ISPda2
- Family IS91
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
KP100338 | ND | Photobacterium damselae | Photobacterium damselae Photobacterium damselae subsp. piscicida plasmid pPHDP70 Photobacterium damselae subsp. piscicida strain DI21 genome Photobacterium damselae subsp. piscicida strain L091106-03H genome |
DNA section
IS Length : 1821 bp
Ends
oriIS : AAGGTTAGGAATTTCAATTCCTAACCACTCTGACAGCAATACTGAAAAATCAATCAGTAATCGTCTTTCTTATGACTTAGCCGACTAAAATAGGTTACTT II struct. : No
terIS : CCCGCTAAATTAGCGAGCATAAAGGGCTAAAAGTGAGGTTCTAGGCCGCAGTTTTCTATTTCAGGTTGAGATATCTGGCTCCAGCCGAAGGCTGGCTACT II struct. : No
Insertion site
Left flank | LE cleavage site | Right flank | RE cleavage site |
---|---|---|---|
AAGGTTAGGA ATTT | GTTC GAAGGTTTAA | ||
TGTGATTCTT CTTG | GTTC TCCCAAGAAG | ||
AATTGGATTA CTTG | GTTC TTCTGTCAGC |
DNA sequence
AAGGTTAGGAATTTCAATTCCTAACCACTCTGACAGCAATACTGAAAAATCAATCAGTAATCGTCTTTCTTATGACTTAGCCGACTAAAATAGGTTACTT
TTGAGTGTTTTCTATACTGTTTTTGGCTTTTTGCCATATTTCAGGCAGATCATCCCTAAAGACTGTAACGAAGTCGTCGTTTTTCCCGTATCGTTGCTTT
TCTCAAAGTAACTAACTCATGCCCTTTCAGCCCCATTTCCATCTTCACAAAGCACATGCGACCACTACATAGAATACATTTGTACGGGTCTATGCCTACC
AGGTGATGCATCATTTGCGCGTAATTCAATGGTTTTGGCTCTACAGGCTCTTCCTGATCCAGTAAGTCATAAACTAACGGTAAGGCTTCTCCCCGTTTTC
TGTTTGACAGAAAACCGTAATACCTGATGGCTCTAAAATTCTTTTCTGCGGGGATATGCGAGACTAACCGATCGATCATCTCTATTTGACTACGGACCAA
TGTCTTATAGCAATTATCTCTATGATCTTTATAGACAAAGTGAACATCACCACCCTGGTAATGACGTAGGCGAGAAGCCGCTATTGGCGGCCGCTTAAAA
TAGCGGCCTAGGTACCTAACGGTTGGACCGACATCTTCTGTCTTTTTGGCTAAGTGAATACGCCACTTTCGACTGTATTGACTAGAGAGAAACTGACTCC
ATCCATGAAAGTCTCTAATATGTTGATAGTTATCATGTTTAGTGTTCAAGGCATTATAGTGGTCTCGTAAGAACGAGACCACTTGCTGCTTCCAATGCTG
CTCTACCATCGCAGCATTAAAGTAGATATTTCCCCATCGCTTAGTTTTGAGATTTACGCCTCCACGTGTGACTGATAGATGGAAATGGACATTCCAATTA
AGTTGACGACCAAATGTATGGACTACACAGAATAGGCCAATCTCTATTCCCCGTTTCTTTGCAAAACTCAAGAATGCTGATACCGCACAGCGGTATAACA
GATTGATTAACCATGGATTAAGTCGGAATATGGGCCATAACTTATCGGGCATCGTTAAGGTCATGTGTTGATATTCACATTTGGGCAAGATGGATAGCTG
CTTCGCTATCCATTTTTCTGTCAGCATTACTCCACAAGAGCTACAAGCTTTACTCTTACAAGAGTTATAGATGACTTTGCGGTGCTCACAATAAGGGTTT
TCACATTCGTAGTGCTTACTGCCCACTTTGCTGGTACCGCAAGCGAGCATTTTTTCTATACACTCTATTTGATTGGTGGTGATGTTATCGCCACAATGCG
TGAGATATTTTTCCCAAGCCTCATCTTTATTAAAGATGAGTTTGGTGGCTCTAGGAACGTGCATATCAGCAATTAGTAAGGCGTTGCACCATCTCGCTCT
GCGATATGAGCAAGCGAGATTAATACTTCATGTAATTTGAATGTAGTAGTCGATGTGTCACCAAACTTATCAATAAGATATTGATAAATTAATGCAATTT
CTTCGTCGTGATCTTTTGGAGGAGCAATATCATATTGGGTATTTAGCAACTGAATGACATTATCCATGGTGGTCTCATATTGCTCATAGTTGTCAAAAGC
AGATGAAGCCTGAACCTGACGACATTTTTTTGTTGGTTTCTTCTTCTTTTTTCTAGGTTTGTTACTCATAGGATGTAGTCAATCCAGTAATGGTGATTTG
TACTGATATAAAATAAGAATGCCCGCTAAATTAGCGAGCATAAAGGGCTAAAAGTGAGGTTCTAGGCCGCAGTTTTCTATTTCAGGTTGAGATATCTGGC
TCCAGCCGAAGGCTGGCTACT
TTGAGTGTTTTCTATACTGTTTTTGGCTTTTTGCCATATTTCAGGCAGATCATCCCTAAAGACTGTAACGAAGTCGTCGTTTTTCCCGTATCGTTGCTTT
TCTCAAAGTAACTAACTCATGCCCTTTCAGCCCCATTTCCATCTTCACAAAGCACATGCGACCACTACATAGAATACATTTGTACGGGTCTATGCCTACC
AGGTGATGCATCATTTGCGCGTAATTCAATGGTTTTGGCTCTACAGGCTCTTCCTGATCCAGTAAGTCATAAACTAACGGTAAGGCTTCTCCCCGTTTTC
TGTTTGACAGAAAACCGTAATACCTGATGGCTCTAAAATTCTTTTCTGCGGGGATATGCGAGACTAACCGATCGATCATCTCTATTTGACTACGGACCAA
TGTCTTATAGCAATTATCTCTATGATCTTTATAGACAAAGTGAACATCACCACCCTGGTAATGACGTAGGCGAGAAGCCGCTATTGGCGGCCGCTTAAAA
TAGCGGCCTAGGTACCTAACGGTTGGACCGACATCTTCTGTCTTTTTGGCTAAGTGAATACGCCACTTTCGACTGTATTGACTAGAGAGAAACTGACTCC
ATCCATGAAAGTCTCTAATATGTTGATAGTTATCATGTTTAGTGTTCAAGGCATTATAGTGGTCTCGTAAGAACGAGACCACTTGCTGCTTCCAATGCTG
CTCTACCATCGCAGCATTAAAGTAGATATTTCCCCATCGCTTAGTTTTGAGATTTACGCCTCCACGTGTGACTGATAGATGGAAATGGACATTCCAATTA
AGTTGACGACCAAATGTATGGACTACACAGAATAGGCCAATCTCTATTCCCCGTTTCTTTGCAAAACTCAAGAATGCTGATACCGCACAGCGGTATAACA
GATTGATTAACCATGGATTAAGTCGGAATATGGGCCATAACTTATCGGGCATCGTTAAGGTCATGTGTTGATATTCACATTTGGGCAAGATGGATAGCTG
CTTCGCTATCCATTTTTCTGTCAGCATTACTCCACAAGAGCTACAAGCTTTACTCTTACAAGAGTTATAGATGACTTTGCGGTGCTCACAATAAGGGTTT
TCACATTCGTAGTGCTTACTGCCCACTTTGCTGGTACCGCAAGCGAGCATTTTTTCTATACACTCTATTTGATTGGTGGTGATGTTATCGCCACAATGCG
TGAGATATTTTTCCCAAGCCTCATCTTTATTAAAGATGAGTTTGGTGGCTCTAGGAACGTGCATATCAGCAATTAGTAAGGCGTTGCACCATCTCGCTCT
GCGATATGAGCAAGCGAGATTAATACTTCATGTAATTTGAATGTAGTAGTCGATGTGTCACCAAACTTATCAATAAGATATTGATAAATTAATGCAATTT
CTTCGTCGTGATCTTTTGGAGGAGCAATATCATATTGGGTATTTAGCAACTGAATGACATTATCCATGGTGGTCTCATATTGCTCATAGTTGTCAAAAGC
AGATGAAGCCTGAACCTGACGACATTTTTTTGTTGGTTTCTTCTTCTTTTTTCTAGGTTTGTTACTCATAGGATGTAGTCAATCCAGTAATGGTGATTTG
TACTGATATAAAATAAGAATGCCCGCTAAATTAGCGAGCATAAAGGGCTAAAAGTGAGGTTCTAGGCCGCAGTTTTCTATTTCAGGTTGAGATATCTGGC
TCCAGCCGAAGGCTGGCTACT
Protein section
ORF number : 2
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1209 bp | 402 aa | 156 | 1364 | - | No |
Chemistry : Y2
ORF sequence :
MHVPRATKLIFNKDEAWEKYLTHCGDNITTNQIECIEKMLACGTSKVGSKHYECENPYCEHRKVIYNSCKSKACSSCGVMLTEKWIAKQLSILPKCEYQH
MTLTMPDKLWPIFRLNPWLINLLYRCAVSAFLSFAKKRGIEIGLFCVVHTFGRQLNWNVHFHLSVTRGGVNLKTKRWGNIYFNAAMVEQHWKQQVVSFLR
DHYNALNTKHDNYQHIRDFHGWSQFLSSQYSRKWRIHLAKKTEDVGPTVRYLGRYFKRPPIAASRLRHYQGGDVHFVYKDHRDNCYKTLVRSQIEMIDRL
VSHIPAEKNFRAIRYYGFLSNRKRGEALPLVYDLLDQEEPVEPKPLNYAQMMHHLVGIDPYKCILCSGRMCFVKMEMGLKGHELVTLRKATIREKRRLRY
SL
MTLTMPDKLWPIFRLNPWLINLLYRCAVSAFLSFAKKRGIEIGLFCVVHTFGRQLNWNVHFHLSVTRGGVNLKTKRWGNIYFNAAMVEQHWKQQVVSFLR
DHYNALNTKHDNYQHIRDFHGWSQFLSSQYSRKWRIHLAKKTEDVGPTVRYLGRYFKRPPIAASRLRHYQGGDVHFVYKDHRDNCYKTLVRSQIEMIDRL
VSHIPAEKNFRAIRYYGFLSNRKRGEALPLVYDLLDQEEPVEPKPLNYAQMMHHLVGIDPYKCILCSGRMCFVKMEMGLKGHELVTLRKATIREKRRLRY
SL
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
297 bp | 98 aa | 1373 | 1669 | - | No |
Annotation : Hypothetical proteinDescription :
ORF sequence :
MSNKPRKKKKKPTKKCRQVQASSAFDNYEQYETTMDNVIQLLNTQYDIAPPKDHDEEIALIYQYLIDKFGDTSTTTFKLHEVLISLAHIAERDGATPY
Blast result :
Comments
ISPda2 is 66% (Transposase) aa similar to ISVa3.
References
1] Miguel Balado (2016) Direct submission
2] Osorio,C.R., Lemos,M.L. and Braun,V. (2004) Biometals 17 (6), 725-733.
3] Osorio,C.R., Juiz-Rio,S. and Lemos,M.L.(2006) Microbiology (Reading, Engl.) 152 (PT 11), 3327-3341.
4] Osorio,C.R., Rivas,A.J., Balado,M., Fuentes-Monteverde,J.C., Rodriguez,J., Jimenez,C., Lemos,M.L. and Waldor,M.K. (2015) Appl. Environ. Microbiol. 81 (17), 5867-5879.
2] Osorio,C.R., Lemos,M.L. and Braun,V. (2004) Biometals 17 (6), 725-733.
3] Osorio,C.R., Juiz-Rio,S. and Lemos,M.L.(2006) Microbiology (Reading, Engl.) 152 (PT 11), 3327-3341.
4] Osorio,C.R., Rivas,A.J., Balado,M., Fuentes-Monteverde,J.C., Rodriguez,J., Jimenez,C., Lemos,M.L. and Waldor,M.K. (2015) Appl. Environ. Microbiol. 81 (17), 5867-5879.