ISPlu19

  • Family IS630
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
BX470251 ND Photorhabdus luminescens
Photorhabdus luminescens
DNA section
IS Length : 1097 bp

Ends


IR Length : 15/22

IRL : TACCCGTAATCATTGAAGATGCTTGATTTTATCCGAAATGGAGATCATTA
IRR : TACCCAAGAAACTTCAAGATGCAGTTTTTAGCACCTGAAAATGGTCGTTA

Insertion site


Left flankDirect repeatRight flankDR Length
GTCCAATACATATATCTCCATTAG4
ATAGCATATGTATATTTACTATTA4
ATCTATAGGGTATATATCAAGGCC4
GATAAAAATG TATATATG ATAATAAAAT0
AAACAATTCATATAGCGTATTTTT4
TCTTAAATAATATATGGTGAAAAT4
TATATAACTATATACCCAATGGAT4
AGATAACGGG TATATATT CATATTGAGA0
AGGAAATCTT GATATATA TATAGACAAG0
CGCTTTCCGC GTTATATA CCAAGTTCCG0
TATTTTTGCG TATATATT CGTCACCAAC0
AAAGTAATAA GATATATA TAAAATAATA0
CAACTATACA TATATATC TATTATCGGT0
AGATGACGGG TATATAAA CATAAAACAC0
AAATGATACA ACTATATA TCTGTTAAGC0
ACTGTTGAAC ACTATATA CGGCACAAAT0
ACATTAAATA ATTATATA TTATTCAAAA0
AGATAACGGG TATATAGA ATTATTAAAA0
CATTCTTAAA TATATATT TAATAAATCA0
TACTTATTTA CTTATATT TACTTATTTA0

DNA sequence

TACCCGTAATCATTGAAGATGCTTGATTTTATCCGAAATGGAGATCATTATCCTCGCTATGAAAATATTCATTACCGATGAACAAAAAGCCGAACTTGAA
CATCTCCATCACACCTGCCGTGATAAGAGGGAGTGTGATCGCATCAAAGCGGTCCTGCTGGCCTCTGAAGGCTGGAGTTCAGTGATGATCGCTCAGGCCC
TGCGTCTTCATGAAATGACCGTTAACCGTCATATCAGCGATTACCTTAATCAAGGTAAACTTAAATCTGATAATGGGGGGTCTGATAGTTTGCTTTCTCA
AGAACAAACTGATTTTTTAATCAATCACTTATCTCAACATCTTTTCCATCACACCCATGAAATCGTGGCCTATGTTGCTCAGCTCTGGAATATTACCTTT
AGCATTCCCGGCATGAATAAATGGCTACACCGTCAGGGTTTTTCTTATAAAAAACCTTGTGGCGTCCCTCATAAATTCGACGCAGAAAAACAGCGACAAT
TTATTGAATATTATGAGAATCTTAAAGTCACAGCGAAAGACGAACCCATCCTTTTTCTTGATGCTGTTCACCCGACTCAAGGCACCAAACTCGGTTATGG
CTGGATGCGAAAAGGCGAGAAAAAAACAGTAAAAACAACAGGAAGCCGGACTCGCCTGAATATATTGGGCGCGCTCAACCTGAATGCCATTGGTCGTACG
GTGTTCCAGGAATATCAAACCATCAATGACTACAACATTTGCTGTTTTTTCAATGAAATAAGAAAGTCTTATCCTGACTATCATCAAAAAATTCATCTTA
TTGTGGATGGGGCGGGTTACAACAAAGCTCATCTTGTTAAGGAGTGGGCTTATGTTAGCAATATTGAGTTACATTACCTTCCTCCCTATAGCCCAAATTT
AAACCCAATAGAGCGATTATGGAAGGTCATGAATGAACAGGTTCGAAATAACCGTTATTTTGCGGATAAACATGAATTTCGAGACAACGTCTTCAAATTT
TTCACCACAACGCTACCGGATATAGCGGACTCGCTGATGTCTAGAATTAACGACCATTTTCAGGTGCTAAAAACTGCATCTTGAAGTTTCTTGGGTA
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1026 bp341 aa591084+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MKIFITDEQKAELEHLHHTCRDKRECDRIKAVLLASEGWSSVMIAQALRLHEMTVNRHISDYLNQGKLKSDNGGSDSLLSQEQTDFLINHLSQHLFHHTH
EIVAYVAQLWNITFSIPGMNKWLHRQGFSYKKPCGVPHKFDAEKQRQFIEYYENLKVTAKDEPILFLDAVHPTQGTKLGYGWMRKGEKKTVKTTGSRTRL
NILGALNLNAIGRTVFQEYQTINDYNICCFFNEIRKSYPDYHQKIHLIVDGAGYNKAHLVKEWAYVSNIELHYLPPYSPNLNPIERLWKVMNEQVRNNRY
FADKHEFRDNVFKFFTTTLPDIADSLMSRINDHFQVLKTAS

 

Blast result :
Comments
ISPlu19 is 97% aa similar to ISPlu3.
References
1] Friedhelm Pfeiffer (2016) Direct submission.
2] Duchaud,E., Rusniok,C., Frangeul,L., Buchrieser,C., Taourit,S., Bocs,S., Boursaux-Eude,C., Chandler,M., Dassa,E., Derose,R., Derzelle,S., Freyssinet,G., Gaudriault,S., Givaudan,A., Glaser,P., Medigue,C., Lanois,A., Powell,K., Siguier,P., Wingate,V., Zouine,M., Boemare,N., Danchin,A. and Kunst,F. (2003) Nat. Biotechnol. 11: 1307-1313