ISPlu19
- Family IS630
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
BX470251 | ND | Photorhabdus luminescens | Photorhabdus luminescens |
DNA section
IS Length : 1097 bp
Ends
IR Length : 15/22
IRL : TACCCGTAATCATTGAAGATGCTTGATTTTATCCGAAATGGAGATCATTA
IRR : TACCCAAGAAACTTCAAGATGCAGTTTTTAGCACCTGAAAATGGTCGTTA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GTCCAATACA | TATA | TCTCCATTAG | 4 |
ATAGCATATG | TATA | TTTACTATTA | 4 |
ATCTATAGGG | TATA | TATCAAGGCC | 4 |
GATAAAAATG TATA | TATG ATAATAAAAT | 0 | |
AAACAATTCA | TATA | GCGTATTTTT | 4 |
TCTTAAATAA | TATA | TGGTGAAAAT | 4 |
TATATAACTA | TATA | CCCAATGGAT | 4 |
AGATAACGGG TATA | TATT CATATTGAGA | 0 | |
AGGAAATCTT GATA | TATA TATAGACAAG | 0 | |
CGCTTTCCGC GTTA | TATA CCAAGTTCCG | 0 | |
TATTTTTGCG TATA | TATT CGTCACCAAC | 0 | |
AAAGTAATAA GATA | TATA TAAAATAATA | 0 | |
CAACTATACA TATA | TATC TATTATCGGT | 0 | |
AGATGACGGG TATA | TAAA CATAAAACAC | 0 | |
AAATGATACA ACTA | TATA TCTGTTAAGC | 0 | |
ACTGTTGAAC ACTA | TATA CGGCACAAAT | 0 | |
ACATTAAATA ATTA | TATA TTATTCAAAA | 0 | |
AGATAACGGG TATA | TAGA ATTATTAAAA | 0 | |
CATTCTTAAA TATA | TATT TAATAAATCA | 0 | |
TACTTATTTA CTTA | TATT TACTTATTTA | 0 |
DNA sequence
TACCCGTAATCATTGAAGATGCTTGATTTTATCCGAAATGGAGATCATTATCCTCGCTATGAAAATATTCATTACCGATGAACAAAAAGCCGAACTTGAA
CATCTCCATCACACCTGCCGTGATAAGAGGGAGTGTGATCGCATCAAAGCGGTCCTGCTGGCCTCTGAAGGCTGGAGTTCAGTGATGATCGCTCAGGCCC
TGCGTCTTCATGAAATGACCGTTAACCGTCATATCAGCGATTACCTTAATCAAGGTAAACTTAAATCTGATAATGGGGGGTCTGATAGTTTGCTTTCTCA
AGAACAAACTGATTTTTTAATCAATCACTTATCTCAACATCTTTTCCATCACACCCATGAAATCGTGGCCTATGTTGCTCAGCTCTGGAATATTACCTTT
AGCATTCCCGGCATGAATAAATGGCTACACCGTCAGGGTTTTTCTTATAAAAAACCTTGTGGCGTCCCTCATAAATTCGACGCAGAAAAACAGCGACAAT
TTATTGAATATTATGAGAATCTTAAAGTCACAGCGAAAGACGAACCCATCCTTTTTCTTGATGCTGTTCACCCGACTCAAGGCACCAAACTCGGTTATGG
CTGGATGCGAAAAGGCGAGAAAAAAACAGTAAAAACAACAGGAAGCCGGACTCGCCTGAATATATTGGGCGCGCTCAACCTGAATGCCATTGGTCGTACG
GTGTTCCAGGAATATCAAACCATCAATGACTACAACATTTGCTGTTTTTTCAATGAAATAAGAAAGTCTTATCCTGACTATCATCAAAAAATTCATCTTA
TTGTGGATGGGGCGGGTTACAACAAAGCTCATCTTGTTAAGGAGTGGGCTTATGTTAGCAATATTGAGTTACATTACCTTCCTCCCTATAGCCCAAATTT
AAACCCAATAGAGCGATTATGGAAGGTCATGAATGAACAGGTTCGAAATAACCGTTATTTTGCGGATAAACATGAATTTCGAGACAACGTCTTCAAATTT
TTCACCACAACGCTACCGGATATAGCGGACTCGCTGATGTCTAGAATTAACGACCATTTTCAGGTGCTAAAAACTGCATCTTGAAGTTTCTTGGGTA
CATCTCCATCACACCTGCCGTGATAAGAGGGAGTGTGATCGCATCAAAGCGGTCCTGCTGGCCTCTGAAGGCTGGAGTTCAGTGATGATCGCTCAGGCCC
TGCGTCTTCATGAAATGACCGTTAACCGTCATATCAGCGATTACCTTAATCAAGGTAAACTTAAATCTGATAATGGGGGGTCTGATAGTTTGCTTTCTCA
AGAACAAACTGATTTTTTAATCAATCACTTATCTCAACATCTTTTCCATCACACCCATGAAATCGTGGCCTATGTTGCTCAGCTCTGGAATATTACCTTT
AGCATTCCCGGCATGAATAAATGGCTACACCGTCAGGGTTTTTCTTATAAAAAACCTTGTGGCGTCCCTCATAAATTCGACGCAGAAAAACAGCGACAAT
TTATTGAATATTATGAGAATCTTAAAGTCACAGCGAAAGACGAACCCATCCTTTTTCTTGATGCTGTTCACCCGACTCAAGGCACCAAACTCGGTTATGG
CTGGATGCGAAAAGGCGAGAAAAAAACAGTAAAAACAACAGGAAGCCGGACTCGCCTGAATATATTGGGCGCGCTCAACCTGAATGCCATTGGTCGTACG
GTGTTCCAGGAATATCAAACCATCAATGACTACAACATTTGCTGTTTTTTCAATGAAATAAGAAAGTCTTATCCTGACTATCATCAAAAAATTCATCTTA
TTGTGGATGGGGCGGGTTACAACAAAGCTCATCTTGTTAAGGAGTGGGCTTATGTTAGCAATATTGAGTTACATTACCTTCCTCCCTATAGCCCAAATTT
AAACCCAATAGAGCGATTATGGAAGGTCATGAATGAACAGGTTCGAAATAACCGTTATTTTGCGGATAAACATGAATTTCGAGACAACGTCTTCAAATTT
TTCACCACAACGCTACCGGATATAGCGGACTCGCTGATGTCTAGAATTAACGACCATTTTCAGGTGCTAAAAACTGCATCTTGAAGTTTCTTGGGTA
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1026 bp | 341 aa | 59 | 1084 | + | No |
Chemistry : DDE
ORF sequence :
MKIFITDEQKAELEHLHHTCRDKRECDRIKAVLLASEGWSSVMIAQALRLHEMTVNRHISDYLNQGKLKSDNGGSDSLLSQEQTDFLINHLSQHLFHHTH
EIVAYVAQLWNITFSIPGMNKWLHRQGFSYKKPCGVPHKFDAEKQRQFIEYYENLKVTAKDEPILFLDAVHPTQGTKLGYGWMRKGEKKTVKTTGSRTRL
NILGALNLNAIGRTVFQEYQTINDYNICCFFNEIRKSYPDYHQKIHLIVDGAGYNKAHLVKEWAYVSNIELHYLPPYSPNLNPIERLWKVMNEQVRNNRY
FADKHEFRDNVFKFFTTTLPDIADSLMSRINDHFQVLKTAS
EIVAYVAQLWNITFSIPGMNKWLHRQGFSYKKPCGVPHKFDAEKQRQFIEYYENLKVTAKDEPILFLDAVHPTQGTKLGYGWMRKGEKKTVKTTGSRTRL
NILGALNLNAIGRTVFQEYQTINDYNICCFFNEIRKSYPDYHQKIHLIVDGAGYNKAHLVKEWAYVSNIELHYLPPYSPNLNPIERLWKVMNEQVRNNRY
FADKHEFRDNVFKFFTTTLPDIADSLMSRINDHFQVLKTAS
Blast result :
Comments
ISPlu19 is 97% aa similar to ISPlu3.
References
1] Friedhelm Pfeiffer (2016) Direct submission.
2] Duchaud,E., Rusniok,C., Frangeul,L., Buchrieser,C., Taourit,S., Bocs,S., Boursaux-Eude,C., Chandler,M., Dassa,E., Derose,R., Derzelle,S., Freyssinet,G., Gaudriault,S., Givaudan,A., Glaser,P., Medigue,C., Lanois,A., Powell,K., Siguier,P., Wingate,V., Zouine,M., Boemare,N., Danchin,A. and Kunst,F. (2003) Nat. Biotechnol. 11: 1307-1313
2] Duchaud,E., Rusniok,C., Frangeul,L., Buchrieser,C., Taourit,S., Bocs,S., Boursaux-Eude,C., Chandler,M., Dassa,E., Derose,R., Derzelle,S., Freyssinet,G., Gaudriault,S., Givaudan,A., Glaser,P., Medigue,C., Lanois,A., Powell,K., Siguier,P., Wingate,V., Zouine,M., Boemare,N., Danchin,A. and Kunst,F. (2003) Nat. Biotechnol. 11: 1307-1313