ISPdo1
- Family IS1595
- Group ISPna2
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
CP016543 | ND | Planococcus donghaensis | Planococcus donghaensis Planococcus donghaensis strain DSM 22276 |
DNA section
IS Length : 1597 bp
Ends
IR Length : 28/33
IRL : GGCTATGTTAaataactctgttgttttttaagtactcattgaatttttaG
IRR : GGCTATGTTAtcgaactctgttgattttgaagtcaatcaaagggacttcc
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TGTGGTGTTTTT | ttctaatt | AAAACACATCCACAA | 8 |
DNA sequence
GGCTATGTTAAATAACTCTGTTGTTTTTTAAGTACTCATTGAATTTTTAGAACATTTGTTCTAAAAATGAGTATAAAAAGATGGAAGTGGGTGAAAGACA
TGGCATTGAAAGAAGTTATGCAGGAAGTCAAAAAACTATCGAATAAAGATATGCATCGGCTAATACAATTCTTGACCCAGTCTGTCACACCGCTTTCACC
GCAAGAGCCTTTATTTGAGGAGATTCGAGACCTAAAACACAAGGGCGGCTATACCTGTCCGCACTGCCAGTCCAATCTATCTGTCCGATTCGGTAAGTAT
GTTGTAAAAGTAGGTCTAAAGAAAATGAACCGCCAACGCTACCGATGCAAAGATTGTTTAAAGACCTTCACTGATGTCACCAATACCCCGCTCTATCGCA
CTCATAAGCCTGATAAATGGTTCGACTTCGTTCGATGCATGATTGATGGCGAGACGCTTCGCAAAGCAGCGGAGAAACTCGATGTCCACCATGTCACTTT
GTTCTACTGGCGCCATAAGCTTCTTTCCGCTCTAGAACAGATGGATTTCGAGAAGTTTGCAGGAATTGTTGAAATGGATGAGACCTATTTTCTGTACTCT
GAAAAGGGCAAGCGCGGAATTCAAGGACGGAAACCTCGTAAGCGGGGAGGTTCTTCGCAATTCCGCGGTATTAGCCATGAACAGATATGCGTACTCGTAG
CCAGAGACCGTCAAAAATCTACGTATTCACGGGTTATCGGTGAAGGACGTATTCTGAAGACTCGGCTTCACCAGGCGATTGGCGCTAAGCTGACTTCCGA
AAACGTTCTATGCACAGATGCGTGGCGAGCTTTCAAAACTTATGCCAAAGAAAAAGGAATGAACCACTATGCATTTAAATCAGATGGTAAGGAACGGGTT
AAAGGACTCTATCATATTCAAAATGTGAACAGTTACCACGGAAGGCTCAAGAACTGGATGAAACGTTTCAATGGTGTGGCGACGAAATACCTCGACCATT
ATTTGAGCTGGTTTCAGTTTCTAGATGCCATAAAACATCGAAATAATTCAGGGACAGTATCTAAGATGATGATTGAGAGCTGCTTATTTCCAGTTACTGA
AACTTATCAGGCACTCCGTACGTACCAATATAAAATATAGATGTTGAGGGGGAATCCGTTTGAAAAGAAAACACTCATATTTACTTATCTCTTTTTTGGT
TGCTTTGTTCTTTATGGCAGGTTGTTCAGTAGAAAATGCCGATACGTCATCCGCTGACTGGGCCTATTCATTCGTTGTATGGGATGATTATATTTACCAA
ATAGGCAATGAATATGTGCAAGAAGTAGATGAAGAGATTGGACAAGTCACGCTTTATTCTGATATGGAAGGTTCCTATGCGGGAAATTTCTCCAATGAAT
ATGAAAAAGGGACAAAGTATTTTTCAATAACAGGAATTAGTACGGAAGAAGCAATTGCCATTAAAGAAAAAGATGGCCAATATCGAAAAGCCATCAGAGA
CGGGAAATATGCAGGCAGGTAATTTATAGAGGGGGCTTCTTAAATTTGGAAGTCCCTTTGATTGACTTCAAAATCAACAGAGTTCGATAACATAGCC
TGGCATTGAAAGAAGTTATGCAGGAAGTCAAAAAACTATCGAATAAAGATATGCATCGGCTAATACAATTCTTGACCCAGTCTGTCACACCGCTTTCACC
GCAAGAGCCTTTATTTGAGGAGATTCGAGACCTAAAACACAAGGGCGGCTATACCTGTCCGCACTGCCAGTCCAATCTATCTGTCCGATTCGGTAAGTAT
GTTGTAAAAGTAGGTCTAAAGAAAATGAACCGCCAACGCTACCGATGCAAAGATTGTTTAAAGACCTTCACTGATGTCACCAATACCCCGCTCTATCGCA
CTCATAAGCCTGATAAATGGTTCGACTTCGTTCGATGCATGATTGATGGCGAGACGCTTCGCAAAGCAGCGGAGAAACTCGATGTCCACCATGTCACTTT
GTTCTACTGGCGCCATAAGCTTCTTTCCGCTCTAGAACAGATGGATTTCGAGAAGTTTGCAGGAATTGTTGAAATGGATGAGACCTATTTTCTGTACTCT
GAAAAGGGCAAGCGCGGAATTCAAGGACGGAAACCTCGTAAGCGGGGAGGTTCTTCGCAATTCCGCGGTATTAGCCATGAACAGATATGCGTACTCGTAG
CCAGAGACCGTCAAAAATCTACGTATTCACGGGTTATCGGTGAAGGACGTATTCTGAAGACTCGGCTTCACCAGGCGATTGGCGCTAAGCTGACTTCCGA
AAACGTTCTATGCACAGATGCGTGGCGAGCTTTCAAAACTTATGCCAAAGAAAAAGGAATGAACCACTATGCATTTAAATCAGATGGTAAGGAACGGGTT
AAAGGACTCTATCATATTCAAAATGTGAACAGTTACCACGGAAGGCTCAAGAACTGGATGAAACGTTTCAATGGTGTGGCGACGAAATACCTCGACCATT
ATTTGAGCTGGTTTCAGTTTCTAGATGCCATAAAACATCGAAATAATTCAGGGACAGTATCTAAGATGATGATTGAGAGCTGCTTATTTCCAGTTACTGA
AACTTATCAGGCACTCCGTACGTACCAATATAAAATATAGATGTTGAGGGGGAATCCGTTTGAAAAGAAAACACTCATATTTACTTATCTCTTTTTTGGT
TGCTTTGTTCTTTATGGCAGGTTGTTCAGTAGAAAATGCCGATACGTCATCCGCTGACTGGGCCTATTCATTCGTTGTATGGGATGATTATATTTACCAA
ATAGGCAATGAATATGTGCAAGAAGTAGATGAAGAGATTGGACAAGTCACGCTTTATTCTGATATGGAAGGTTCCTATGCGGGAAATTTCTCCAATGAAT
ATGAAAAAGGGACAAAGTATTTTTCAATAACAGGAATTAGTACGGAAGAAGCAATTGCCATTAAAGAAAAAGATGGCCAATATCGAAAAGCCATCAGAGA
CGGGAAATATGCAGGCAGGTAATTTATAGAGGGGGCTTCTTAAATTTGGAAGTCCCTTTGATTGACTTCAAAATCAACAGAGTTCGATAACATAGCC
Protein section
ORF number : 2
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1041 bp | 346 aa | 100 | 1140 | + | No |
Chemistry : DDE
ORF sequence :
MALKEVMQEVKKLSNKDMHRLIQFLTQSVTPLSPQEPLFEEIRDLKHKGGYTCPHCQSNLSVRFGKYVVKVGLKKMNRQRYRCKDCLKTFTDVTNTPLYR
THKPDKWFDFVRCMIDGETLRKAAEKLDVHHVTLFYWRHKLLSALEQMDFEKFAGIVEMDETYFLYSEKGKRGIQGRKPRKRGGSSQFRGISHEQICVLV
ARDRQKSTYSRVIGEGRILKTRLHQAIGAKLTSENVLCTDAWRAFKTYAKEKGMNHYAFKSDGKERVKGLYHIQNVNSYHGRLKNWMKRFNGVATKYLDH
YLSWFQFLDAIKHRNNSGTVSKMMIESCLFPVTETYQALRTYQYKI
THKPDKWFDFVRCMIDGETLRKAAEKLDVHHVTLFYWRHKLLSALEQMDFEKFAGIVEMDETYFLYSEKGKRGIQGRKPRKRGGSSQFRGISHEQICVLV
ARDRQKSTYSRVIGEGRILKTRLHQAIGAKLTSENVLCTDAWRAFKTYAKEKGMNHYAFKSDGKERVKGLYHIQNVNSYHGRLKNWMKRFNGVATKYLDH
YLSWFQFLDAIKHRNNSGTVSKMMIESCLFPVTETYQALRTYQYKI
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
309 bp | 102 aa | 1214 | 1522 | + | No |
Annotation : Hypothetical proteinDescription :
ORF sequence :
MAGCSVENADTSSADWAYSFVVWDDYIYQIGNEYVQEVDEEIGQVTLYSDMEGSYAGNFSNEYEKGTKYFSITGISTEEAIAIKEKDGQYRKAIRDGKYA
GR
GR
Blast result :
Comments
ISPdo1 is 85% (transposase) aa similar to ISBce20.
References