ISBko1

  • Family IS1595
  • Group ISPna2
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
LILC01000007 ND Bacillus koreensis
Bacillus koreensis
Bacillus koreensis DSM 16467
DNA section
IS Length : 1721 bp

Ends


IR Length : 25/31

IRL : GGCTCTGTTAAAggtaattgttgatatttgattactccccgaattcttag
IRR : GGCTCTGTTAAAttttaatgttgattttagaaagaaatatatgggggaat

Insertion site


Left flankDirect repeatRight flankDR Length
ttatgcaa8

DNA sequence

GGCTCTGTTAAAGGTAATTGTTGATATTTGATTACTCCCCGAATTCTTAGTATAATTACCGAAAGAACATACATTCGGTGAGGTGAGAAGGTTGAGTAAA
GCGTTCAATAATCTACTAAAACATATCGATGGTTTGTCACACACAGAAAAAGAACGTATTTTTCAATGGGTTAAACGCTATGTTGAACCTTCTTCATCTG
TTGGTGGTCGTCTTATCAATGAAATGAGGGAAACTCGTTTTAACGAAGGATTTGAATGCCCTCATTGTGCATCTGAACACGTTGTTAGGTTTGGAAAATA
TAATAGTCGCCAACGCTACCGTTGTAAGTGTTGCAGTAAGACATTCACCGACACAACCAATACTGTTCTTTACCGAACAAGAAAAGGCAATGAATGGATT
ACATTTGTGGATTGTATGTTCAAGGGTTATTCGCTACGAAAATCTGCCGAAATCGTAGGGGTTACTTGGGTTACACTTTTTTATTGGAGACACAAACTAT
TAAGTGCCTTGAAGCAATTGGATTTTGAGCAATTTGAAGGTATCGTTGAAGTTGACGAAACCTATTTCCTATACTCTGAAAAAGGTAAGCGAGGCATTTC
TGACCGCAAACCTCGTAAGCGTGGAGGAAAATCTAAACATAGAGGAATTAGCCACGAACAGGTCTGCGTACTTGTTGCCAGAGACCGAACCAAGGCAACC
GTCTCCAAAGTCGCTTGTATGGGTCGGGTTGTGAAAACTAAGGTCGATAATATGATTGGCTCTAAACTATCGCCTGAAAATGTACTTGTAACAGACGCTT
GGAGAGCTTATAAAACCTACGCAAGGGAAAAAGGAATAGAACATTATCGAATTAAATCAAATGATGGAAAGCACGTTATTAAAGGCTTGTACCACATTCA
GAATGTAAATGGACTTCATTCTCGTATGAAACAGTGGTTAGACCGCTTTAAAGGTGTGGCTACAAAATATCTCGATAATTACCTGTCTTGGTTTTTGTTC
ATTGATAGTCGTAGTAATGAAAGCACTAAACACAATATCAAAGAATTCTTGTTATCATCATTTGTATTTGAAATGACAGATACTTATGATACTTTACGTT
TGTCTAAATTCAATATATAAAGGATGGGGAAATAGGAATGAATGCTAATAAGAACATTTCACAGTGCTTAAAGATAAGACCTTTAACCATAAATGATTAT
GAAACTGTATTGAAATGGAGCAAGGATGACTCTTTTTGCTCAGCTAATGGATGGGACTTAAATAGAAGCCCTGAAGAAGTATATAGTTGGTGGCTCAAAT
GTGTTAATAATGTAGCTGAAGATTTTATCAGAATGGGAATAGAGCTTAACGAGAAATTAATCGGTTATGCAGATTTAGCCTGTATTAAAGATAATACTGC
TGAGTTAGGTATTGCAATTGGAGAAAGTGGGTTGTGGGGAAAAGGGCTTGGATATAATTCTGCCATATGTATGATGGAGTATGCCTCAAAGAAATTAGGA
ATTACAACTTTTAACGCAGAAACACACGAAGCCAATGTTCGTTCACGAAAAATGCTTCAAAAGATAGGATTTAAGGAAATTAGTAGATTGGGTAGCGAAG
AATATTTAGGGATGAACAGCCAACTAATACAATACAAACTAAATTTATAACGGGGAACCCCCAGTTTATAGATTCCCCCATATATTTCTTTCTAAAATCA
ACATTAAAATTTAACAGAGCC
Protein section
ORF number : 2

 

ORF 2
LengthBeginEndStrandFusion ORF
513 bp170 aa11381650+No
ORF function : Passenger Gene
Annotation : Putative acetyltransferase GCN5Description : Antibiotic resistance

ORF sequence :

MNANKNISQCLKIRPLTINDYETVLKWSKDDSFCSANGWDLNRSPEEVYSWWLKCVNNVAEDFIRMGIELNEKLIGYADLACIKDNTAELGIAIGESGLW
GKGLGYNSAICMMEYASKKLGITTFNAETHEANVRSRKMLQKIGFKEISRLGSEEYLGMNSQLIQYKLNL

 

Blast result :
ORF 1
LengthBeginEndStrandFusion ORF
1029 bp342 aa921120+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MSKAFNNLLKHIDGLSHTEKERIFQWVKRYVEPSSSVGGRLINEMRETRFNEGFECPHCASEHVVRFGKYNSRQRYRCKCCSKTFTDTTNTVLYRTRKGN
EWITFVDCMFKGYSLRKSAEIVGVTWVTLFYWRHKLLSALKQLDFEQFEGIVEVDETYFLYSEKGKRGISDRKPRKRGGKSKHRGISHEQVCVLVARDRT
KATVSKVACMGRVVKTKVDNMIGSKLSPENVLVTDAWRAYKTYAREKGIEHYRIKSNDGKHVIKGLYHIQNVNGLHSRMKQWLDRFKGVATKYLDNYLSW
FLFIDSRSNESTKHNIKEFLLSSFVFEMTDTYDTLRLSKFNI

 

Blast result :
Comments
ISBko1 is 99% (transposase) aa similar to ISBwe1. The passenger gene is different of that of ISBwe1.
References