ISBko1
- Family IS1595
- Group ISPna2
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
LILC01000007 | ND | Bacillus koreensis | Bacillus koreensis Bacillus koreensis DSM 16467 |
DNA section
IS Length : 1721 bp
Ends
IR Length : 25/31
IRL : GGCTCTGTTAAAggtaattgttgatatttgattactccccgaattcttag
IRR : GGCTCTGTTAAAttttaatgttgattttagaaagaaatatatgggggaat
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
ttatgcaa | 8 |
DNA sequence
GGCTCTGTTAAAGGTAATTGTTGATATTTGATTACTCCCCGAATTCTTAGTATAATTACCGAAAGAACATACATTCGGTGAGGTGAGAAGGTTGAGTAAA
GCGTTCAATAATCTACTAAAACATATCGATGGTTTGTCACACACAGAAAAAGAACGTATTTTTCAATGGGTTAAACGCTATGTTGAACCTTCTTCATCTG
TTGGTGGTCGTCTTATCAATGAAATGAGGGAAACTCGTTTTAACGAAGGATTTGAATGCCCTCATTGTGCATCTGAACACGTTGTTAGGTTTGGAAAATA
TAATAGTCGCCAACGCTACCGTTGTAAGTGTTGCAGTAAGACATTCACCGACACAACCAATACTGTTCTTTACCGAACAAGAAAAGGCAATGAATGGATT
ACATTTGTGGATTGTATGTTCAAGGGTTATTCGCTACGAAAATCTGCCGAAATCGTAGGGGTTACTTGGGTTACACTTTTTTATTGGAGACACAAACTAT
TAAGTGCCTTGAAGCAATTGGATTTTGAGCAATTTGAAGGTATCGTTGAAGTTGACGAAACCTATTTCCTATACTCTGAAAAAGGTAAGCGAGGCATTTC
TGACCGCAAACCTCGTAAGCGTGGAGGAAAATCTAAACATAGAGGAATTAGCCACGAACAGGTCTGCGTACTTGTTGCCAGAGACCGAACCAAGGCAACC
GTCTCCAAAGTCGCTTGTATGGGTCGGGTTGTGAAAACTAAGGTCGATAATATGATTGGCTCTAAACTATCGCCTGAAAATGTACTTGTAACAGACGCTT
GGAGAGCTTATAAAACCTACGCAAGGGAAAAAGGAATAGAACATTATCGAATTAAATCAAATGATGGAAAGCACGTTATTAAAGGCTTGTACCACATTCA
GAATGTAAATGGACTTCATTCTCGTATGAAACAGTGGTTAGACCGCTTTAAAGGTGTGGCTACAAAATATCTCGATAATTACCTGTCTTGGTTTTTGTTC
ATTGATAGTCGTAGTAATGAAAGCACTAAACACAATATCAAAGAATTCTTGTTATCATCATTTGTATTTGAAATGACAGATACTTATGATACTTTACGTT
TGTCTAAATTCAATATATAAAGGATGGGGAAATAGGAATGAATGCTAATAAGAACATTTCACAGTGCTTAAAGATAAGACCTTTAACCATAAATGATTAT
GAAACTGTATTGAAATGGAGCAAGGATGACTCTTTTTGCTCAGCTAATGGATGGGACTTAAATAGAAGCCCTGAAGAAGTATATAGTTGGTGGCTCAAAT
GTGTTAATAATGTAGCTGAAGATTTTATCAGAATGGGAATAGAGCTTAACGAGAAATTAATCGGTTATGCAGATTTAGCCTGTATTAAAGATAATACTGC
TGAGTTAGGTATTGCAATTGGAGAAAGTGGGTTGTGGGGAAAAGGGCTTGGATATAATTCTGCCATATGTATGATGGAGTATGCCTCAAAGAAATTAGGA
ATTACAACTTTTAACGCAGAAACACACGAAGCCAATGTTCGTTCACGAAAAATGCTTCAAAAGATAGGATTTAAGGAAATTAGTAGATTGGGTAGCGAAG
AATATTTAGGGATGAACAGCCAACTAATACAATACAAACTAAATTTATAACGGGGAACCCCCAGTTTATAGATTCCCCCATATATTTCTTTCTAAAATCA
ACATTAAAATTTAACAGAGCC
GCGTTCAATAATCTACTAAAACATATCGATGGTTTGTCACACACAGAAAAAGAACGTATTTTTCAATGGGTTAAACGCTATGTTGAACCTTCTTCATCTG
TTGGTGGTCGTCTTATCAATGAAATGAGGGAAACTCGTTTTAACGAAGGATTTGAATGCCCTCATTGTGCATCTGAACACGTTGTTAGGTTTGGAAAATA
TAATAGTCGCCAACGCTACCGTTGTAAGTGTTGCAGTAAGACATTCACCGACACAACCAATACTGTTCTTTACCGAACAAGAAAAGGCAATGAATGGATT
ACATTTGTGGATTGTATGTTCAAGGGTTATTCGCTACGAAAATCTGCCGAAATCGTAGGGGTTACTTGGGTTACACTTTTTTATTGGAGACACAAACTAT
TAAGTGCCTTGAAGCAATTGGATTTTGAGCAATTTGAAGGTATCGTTGAAGTTGACGAAACCTATTTCCTATACTCTGAAAAAGGTAAGCGAGGCATTTC
TGACCGCAAACCTCGTAAGCGTGGAGGAAAATCTAAACATAGAGGAATTAGCCACGAACAGGTCTGCGTACTTGTTGCCAGAGACCGAACCAAGGCAACC
GTCTCCAAAGTCGCTTGTATGGGTCGGGTTGTGAAAACTAAGGTCGATAATATGATTGGCTCTAAACTATCGCCTGAAAATGTACTTGTAACAGACGCTT
GGAGAGCTTATAAAACCTACGCAAGGGAAAAAGGAATAGAACATTATCGAATTAAATCAAATGATGGAAAGCACGTTATTAAAGGCTTGTACCACATTCA
GAATGTAAATGGACTTCATTCTCGTATGAAACAGTGGTTAGACCGCTTTAAAGGTGTGGCTACAAAATATCTCGATAATTACCTGTCTTGGTTTTTGTTC
ATTGATAGTCGTAGTAATGAAAGCACTAAACACAATATCAAAGAATTCTTGTTATCATCATTTGTATTTGAAATGACAGATACTTATGATACTTTACGTT
TGTCTAAATTCAATATATAAAGGATGGGGAAATAGGAATGAATGCTAATAAGAACATTTCACAGTGCTTAAAGATAAGACCTTTAACCATAAATGATTAT
GAAACTGTATTGAAATGGAGCAAGGATGACTCTTTTTGCTCAGCTAATGGATGGGACTTAAATAGAAGCCCTGAAGAAGTATATAGTTGGTGGCTCAAAT
GTGTTAATAATGTAGCTGAAGATTTTATCAGAATGGGAATAGAGCTTAACGAGAAATTAATCGGTTATGCAGATTTAGCCTGTATTAAAGATAATACTGC
TGAGTTAGGTATTGCAATTGGAGAAAGTGGGTTGTGGGGAAAAGGGCTTGGATATAATTCTGCCATATGTATGATGGAGTATGCCTCAAAGAAATTAGGA
ATTACAACTTTTAACGCAGAAACACACGAAGCCAATGTTCGTTCACGAAAAATGCTTCAAAAGATAGGATTTAAGGAAATTAGTAGATTGGGTAGCGAAG
AATATTTAGGGATGAACAGCCAACTAATACAATACAAACTAAATTTATAACGGGGAACCCCCAGTTTATAGATTCCCCCATATATTTCTTTCTAAAATCA
ACATTAAAATTTAACAGAGCC
Protein section
ORF number : 2
ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
513 bp | 170 aa | 1138 | 1650 | + | No |
Annotation : Putative acetyltransferase GCN5Description : Antibiotic resistance
ORF sequence :
MNANKNISQCLKIRPLTINDYETVLKWSKDDSFCSANGWDLNRSPEEVYSWWLKCVNNVAEDFIRMGIELNEKLIGYADLACIKDNTAELGIAIGESGLW
GKGLGYNSAICMMEYASKKLGITTFNAETHEANVRSRKMLQKIGFKEISRLGSEEYLGMNSQLIQYKLNL
GKGLGYNSAICMMEYASKKLGITTFNAETHEANVRSRKMLQKIGFKEISRLGSEEYLGMNSQLIQYKLNL
Blast result :ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1029 bp | 342 aa | 92 | 1120 | + | No |
Chemistry : DDE
ORF sequence :
MSKAFNNLLKHIDGLSHTEKERIFQWVKRYVEPSSSVGGRLINEMRETRFNEGFECPHCASEHVVRFGKYNSRQRYRCKCCSKTFTDTTNTVLYRTRKGN
EWITFVDCMFKGYSLRKSAEIVGVTWVTLFYWRHKLLSALKQLDFEQFEGIVEVDETYFLYSEKGKRGISDRKPRKRGGKSKHRGISHEQVCVLVARDRT
KATVSKVACMGRVVKTKVDNMIGSKLSPENVLVTDAWRAYKTYAREKGIEHYRIKSNDGKHVIKGLYHIQNVNGLHSRMKQWLDRFKGVATKYLDNYLSW
FLFIDSRSNESTKHNIKEFLLSSFVFEMTDTYDTLRLSKFNI
EWITFVDCMFKGYSLRKSAEIVGVTWVTLFYWRHKLLSALKQLDFEQFEGIVEVDETYFLYSEKGKRGISDRKPRKRGGKSKHRGISHEQVCVLVARDRT
KATVSKVACMGRVVKTKVDNMIGSKLSPENVLVTDAWRAYKTYAREKGIEHYRIKSNDGKHVIKGLYHIQNVNGLHSRMKQWLDRFKGVATKYLDNYLSW
FLFIDSRSNESTKHNIKEFLLSSFVFEMTDTYDTLRLSKFNI
Blast result :
Comments
ISBko1 is 99% (transposase) aa similar to ISBwe1. The passenger gene is different of that of ISBwe1.
References