ISSpn11
- Family IS3
- Group IS150
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
ND | Streptococcus pneumoniae | Streptococcus pneumoniae |
DNA section
IS Length : 1436 bp
Ends
IR Length : 23/25
IRL : TGAACTGCACCCCAAAAGTTAGACAGAAAAAATCTAACTTTTGGGGTGTT
IRR : TGTACTGCCCCCCAAAAGTTAGACAATTAATTTATCCGAAGGATTTAGTT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|
DNA sequence
TGAACTGCACCCCAAAAGTTAGACAGAAAAAATCTAACTTTTGGGGTGTTTTTATTATGAAATTAAGTTATGATGATAAAGTTCAGATCTATGAACTTAG
AAAACAAGGATATAGCTTAGAGAAGCTTTCAAATAAATTTGAGATAAACAATTCTAATATTAGGTACATGATTAAATTGATTGATCGTTACGGAATAGAG
TTCGTCAAAAAAGGAAAAAATCGTTACTATTCTCCTGATTTAAAACAAGAAATGATTAATAAAGTCTTACATGAAGGCTGGACTAAAGATAGAGTTTCTC
TTGAATACGGTCTCCCAAGTCGTACGATACTTCTTAACTGGCTAGCACAATACAGGAAAAACGGGTATACTATTGTTGAGAAACCAAGAGGGAGAGTACC
TAAAATGGGACGTAAGCCAAGAACGAGACCTGAAGAGAGGACAGAATTAGAACGTCTTCAAGCAGAAAATGAGTACCTGAGAGCGGAGAATGCCATCCTA
AAAAAGTTAAGAGAACTCCGATTGAAGGAGGAAAAAGAGAAAGAAGAAAGACAGAAATTGTTCAAGAATTAATGACTGAGTTTTCGTTAGTTCTTCTTCT
AAAAGCCATTAAACTAGCTCGTTGGACCTACTACTATCACTTGAAACAGCTAGACAAAACAGATAAGGACCAAGAGCTTAAAGCTGAAATTCAATCCATT
TTTATCGAACACAAAGGAAATTATGCTTATCGCCGGGTTCATTTAGAACTAAGAAATCGTGCTTATCTGGTAAATCATAAAAGAGTTCAAGGCTTGATAA
AAGTACTCAATTTACAAGCTAAAATGCGACAGAAACGAAAATATTCTTCTCATAAAAGAGACGTTGGCAAGAAGGCAGAGAATCTCATTCAAGGCCAACT
TGAAGGCTCTAAAACAATGGAAAAGTGCTACACAGATGTGACAGAATTTGCCATTCCAGCAAGTACTCAAAAGCTTTACTTATCACCAGTTTTAGATGGC
TTTAACAGCGAAATTATCGCCTATAATCTTTCTTGTTCGCCTAATTTAGAACAAGTACAAACAATGTTGGAACAGGCATTCAAAGAGAAGCACTATGAGA
ATACGATTCTCCATAGTGACCAAGGCTGTCAATACCAACACGATTCTTATCATCGGTTCCTAGAGAGTAAGGGAATTCAAGCATCCATGTCACGCAAGGG
AAACAGCCAAGACCACGGTATGATGGAATCTTTCTTTGGCATTTTAAAATCCGAAATGTTTTATGGCTATGAGAAAACATTTAAATCACTTAATCAATTG
GAACAAGCCATTATAGACTATATTGATTATTACAACAACAAGAGAATTAAGGTAAAACTAAAAGGACTTAGCCCTGTGCAATACAGAACTAAATCCTTCG
GATAAATTAATTGTCTAACTTTTGGGGGGCAGTACA
AAAACAAGGATATAGCTTAGAGAAGCTTTCAAATAAATTTGAGATAAACAATTCTAATATTAGGTACATGATTAAATTGATTGATCGTTACGGAATAGAG
TTCGTCAAAAAAGGAAAAAATCGTTACTATTCTCCTGATTTAAAACAAGAAATGATTAATAAAGTCTTACATGAAGGCTGGACTAAAGATAGAGTTTCTC
TTGAATACGGTCTCCCAAGTCGTACGATACTTCTTAACTGGCTAGCACAATACAGGAAAAACGGGTATACTATTGTTGAGAAACCAAGAGGGAGAGTACC
TAAAATGGGACGTAAGCCAAGAACGAGACCTGAAGAGAGGACAGAATTAGAACGTCTTCAAGCAGAAAATGAGTACCTGAGAGCGGAGAATGCCATCCTA
AAAAAGTTAAGAGAACTCCGATTGAAGGAGGAAAAAGAGAAAGAAGAAAGACAGAAATTGTTCAAGAATTAATGACTGAGTTTTCGTTAGTTCTTCTTCT
AAAAGCCATTAAACTAGCTCGTTGGACCTACTACTATCACTTGAAACAGCTAGACAAAACAGATAAGGACCAAGAGCTTAAAGCTGAAATTCAATCCATT
TTTATCGAACACAAAGGAAATTATGCTTATCGCCGGGTTCATTTAGAACTAAGAAATCGTGCTTATCTGGTAAATCATAAAAGAGTTCAAGGCTTGATAA
AAGTACTCAATTTACAAGCTAAAATGCGACAGAAACGAAAATATTCTTCTCATAAAAGAGACGTTGGCAAGAAGGCAGAGAATCTCATTCAAGGCCAACT
TGAAGGCTCTAAAACAATGGAAAAGTGCTACACAGATGTGACAGAATTTGCCATTCCAGCAAGTACTCAAAAGCTTTACTTATCACCAGTTTTAGATGGC
TTTAACAGCGAAATTATCGCCTATAATCTTTCTTGTTCGCCTAATTTAGAACAAGTACAAACAATGTTGGAACAGGCATTCAAAGAGAAGCACTATGAGA
ATACGATTCTCCATAGTGACCAAGGCTGTCAATACCAACACGATTCTTATCATCGGTTCCTAGAGAGTAAGGGAATTCAAGCATCCATGTCACGCAAGGG
AAACAGCCAAGACCACGGTATGATGGAATCTTTCTTTGGCATTTTAAAATCCGAAATGTTTTATGGCTATGAGAAAACATTTAAATCACTTAATCAATTG
GAACAAGCCATTATAGACTATATTGATTATTACAACAACAAGAGAATTAAGGTAAAACTAAAAGGACTTAGCCCTGTGCAATACAGAACTAAATCCTTCG
GATAAATTAATTGTCTAACTTTTGGGGGGCAGTACA
Recoding section
- Recoding by frameshift
- Frame
- Type
- Experimentally demonstrated
Stimulators :
- Shine-Dalgarno sequence :
- Secondary structure :
Recoding motif :
Protein section
ORF number : 3
ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
933 bp | 310 aa | 473 | 1405 | + | No |
Description : First part of the transposase
ORF sequence :
VPESGECHPKKVKRTPIEGGKRERRKTEIVQELMTEFSLVLLLKAIKLARWTYYYHLKQLDKTDKDQELKAEIQSIFIEHKGNYAYRRVHLELRNRAYLV
NHKRVQGLIKVLNLQAKMRQKRKYSSHKRDVGKKAENLIQGQLEGSKTMEKCYTDVTEFAIPASTQKLYLSPVLDGFNSEIIAYNLSCSPNLEQVQTMLE
QAFKEKHYENTILHSDQGCQYQHDSYHRFLESKGIQASMSRKGNSQDHGMMESFFGILKSEMFYGYEKTFKSLNQLEQAIIDYIDYYNNKRIKVKLKGLS
PVQYRTKSFG
NHKRVQGLIKVLNLQAKMRQKRKYSSHKRDVGKKAENLIQGQLEGSKTMEKCYTDVTEFAIPASTQKLYLSPVLDGFNSEIIAYNLSCSPNLEQVQTMLE
QAFKEKHYENTILHSDQGCQYQHDSYHRFLESKGIQASMSRKGNSQDHGMMESFFGILKSEMFYGYEKTFKSLNQLEQAIIDYIDYYNNKRIKVKLKGLS
PVQYRTKSFG
Blast result :ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
516 bp | 171 aa | 57 | 572 | + | No |
Description : Second part of the transposase
ORF sequence :
MKLSYDDKVQIYELRKQGYSLEKLSNKFEINNSNIRYMIKLIDRYGIEFVKKGKNRYYSPDLKQEMINKVLHEGWTKDRVSLEYGLPSRTILLNWLAQYR
KNGYTIVEKPRGRVPKMGRKPRTRPEERTELERLQAENEYLRAENAILKKLRELRLKEEKEKEERQKLFKN
KNGYTIVEKPRGRVPKMGRKPRTRPEERTELERLQAENEYLRAENAILKKLRELRLKEEKEKEERQKLFKN
Blast result :ORF 3
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1349 bp | 449 aa | 57 | 1405 | + | Yes |
Chemistry : DDE
ORF sequence :
MKLSYDDKVQIYELRKQGYSLEKLSNKFEINNSNIRYMIKLIDRYGIEFVKKGKNRYYSPDLKQEMINKVLHEGWTKDRVSLEYGLPSRTILLNWLAQYR
KNGYTIVEKPRGRVPKMGRKPRTRPEERTELERLQAENEYLRAENAILKKVKRTPIEGGKRERRKTEIVQELMTEFSLVLLLKAIKLARWTYYYHLKQLD
KTDKDQELKAEIQSIFIEHKGNYAYRRVHLELRNRAYLVNHKRVQGLIKVLNLQAKMRQKRKYSSHKRDVGKKAENLIQGQLEGSKTMEKCYTDVTEFAI
PASTQKLYLSPVLDGFNSEIIAYNLSCSPNLEQVQTMLEQAFKEKHYENTILHSDQGCQYQHDSYHRFLESKGIQASMSRKGNSQDHGMMESFFGILKSE
MFYGYEKTFKSLNQLEQAIIDYIDYYNNKRIKVKLKGLSPVQYRTKSFG
KNGYTIVEKPRGRVPKMGRKPRTRPEERTELERLQAENEYLRAENAILKKVKRTPIEGGKRERRKTEIVQELMTEFSLVLLLKAIKLARWTYYYHLKQLD
KTDKDQELKAEIQSIFIEHKGNYAYRRVHLELRNRAYLVNHKRVQGLIKVLNLQAKMRQKRKYSSHKRDVGKKAENLIQGQLEGSKTMEKCYTDVTEFAI
PASTQKLYLSPVLDGFNSEIIAYNLSCSPNLEQVQTMLEQAFKEKHYENTILHSDQGCQYQHDSYHRFLESKGIQASMSRKGNSQDHGMMESFFGILKSE
MFYGYEKTFKSLNQLEQAIIDYIDYYNNKRIKVKLKGLSPVQYRTKSFG
Blast result :
Comments
ISSpn11 has very similar termini to ISSpn4, but highly divergent central segment.
ISSpn11 is 87% aa similar to ISSpn4. The third ORF is a putative ORFAB transposase reconstructed in silico by -1 frameshift.
Please could this entry be kept confidential until the paper is published.
ISSpn11 is 87% aa similar to ISSpn4. The third ORF is a putative ORFAB transposase reconstructed in silico by -1 frameshift.
Please could this entry be kept confidential until the paper is published.
References
[1] Croucher, N.J., Coupland, P.G., Stevenson, A.E., Callendrello, A., Bentley, S.D. and Hanage W.P. (2014) Nat. Commun. 5:5471