ISChh1

  • Family IS607
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
CP015575 ND Campylobacter hyointestinalis
Campylobacter hyointestinalis subsp. hyointestinalis LMG 9260
Campylobacter jejuni strain OXC7381
DNA section
IS Length : 2060 bp

Ends


IR Length : 0

IRL : CTTATAACTGCTAAGTAAATTATAAAAAAATCTATAAAATTATATAAATA
IRR : GTTCCTACAAACCTATAAAATCCTATAAAAAGATATAAAACTCTATAAAT

Insertion site


Left flankDirect repeatRight flankDR Length
GATATGCTTAGCTGGGAGGGCTTTATGTCAGTATGAAAGA3

DNA sequence

CTTATAACTGCTAAGTAAATTATAAAAAAATCTATAAAATTATATAAATATTTTATAGATTTTACTTGACTTATTTTTTAAAATTTGCTAAAATAGTCCT
ATGAATAAATTATTATCAATCGGTCAAGCTAGTAAAGCTCTTGGTGTTACTATCCAAACTCTTAGAAATTGGGATAAAAAAGGCTTATTAAAACCTGATG
ATATGACTAAGGGTGGAGAGCGTAGGTATAAGCTAGAAACATTAAAAGCTATAAATAAAAACCTAGTTTTTAATAAAGATAGCTTAAAAACTATTGCTTA
TGCTCGTGTTTCTAGCCACGACCAAAAAGATGATTTAATAAGGCAAGTTCAAGTCTTAGAGCTATATTGTTCTAAACAAGGCTTTAATTATGAAGTTATA
CAAGATTTAGGCTCTGGTATGAATTATTATAAAAAAGGCTTAACTAAATTGCTAAATCAAATTCTAGATGGCAAAGTAAAAAGATTAGTTTTAACTCACA
AAGACAGACTTTTACGCTTTGGTGCTGAGCTAGTATTTGCTATATGTGAAGCCAAAGAAGTAGAAGTAATAATAATAAATAAAGGCGAAGAAAGCGTAAA
ATTTGAAGAAGAATTAGCCAAAGATGTGTTGGAAATAATCACAGTATTTTCAGCTAGACTTTATGGCTCACGCTCAAAGAAAAATAAAAAACTTTTAGAT
GAAATGCAAGAAGTGGTGGTAGAAAATGTCAGCAAATAATAATGAGCTTATTAGCATTTCTCATAAGATAGAGTTAAAGCCAAATAATAAAGCTAAAACT
CATTTTAAAAAAGCCTTTGGTTGTGCTAGACTTGCTTATAATTGGGGACTTGCAAAATGGCAAGAATACTACAAGCAAGGCATTAAAGTAACACATTTAG
ATTTAAAAAAGGAATTTAATGCCATTAAAAAAGAACAATTCCCCTTTGTGTATGAAGTAAGTAAATATGCTACGCAACAGCCTTTTTTAAATCTAAATCT
AGCATTTCAAAAATTTTTTAGAGATTTAAAACAAGGTAAAGTAAGCTATCCAAAATTTAAGAAAAAGAAAGATAATTTCGGCTCTTATTACATAGGTGGA
GACCAAGCAATAATCAAAGATGAAAAATATCTAAAAGTGCCAAATTTAGGACTTGTAAAAATGAAAGAGAAATTGAGATTTAATGGTAAAATCAATTCTT
TTACTATTTCTCAAAGTGCTGATAAATTCTTTGTTTCTTTTAGTATGCAAATTAGTAAAGATGAGTATCTAAAAACTCATAATAAAGCTAAAAATAATAA
TCTAGCACTTGGCATAGATGTAGGCTTAAAATCGTTTTTAAGTTTATCTAATGGCTTAGAGATAAAAGCACCTAAACCATTAGCTAAGTTTAATCGCTTA
ATGATAAAAAGAGCTAGACAGCTAAGCAAAAAGCAACACGCAAAAACCAAGCAAGAAGCATTACAAGGCATTAAAAAATCTAGCAATTATCTAAAAGCAA
GTATTAAGCTAAATAAATTGCATCGTAAAATAGCAAATATAAGAAGTGATTTTTTACACAAGCTTACTTCTAGCTTGGTAGCAAATGCTAAATATTTTTG
CTTAGAGGATTTAAATGTAAAAGGGATGATGAGTAATCATAGACTTGCTAAATCTATAAGCGATGTAAGTTTTTATGAGTTTAAAAGGCAACTAGAATAT
AAATCTAGCTACAACGATAAAGAAATCTATCAAGTAGATAGATTTTATCCTAGTTCTAAATTATGCTCTAATTGTGGAACTATAAAAGAAAATTTAGCTC
TAAAAGATAGAGTTTATATTTGCGATGAATGTGAAATTAGCATTGATAGAGACTACAATGCTAGTCTTAATTTGCTTTCACAATTAAAGCAAAAAATAGG
CAAAGTTCTTGCCGAATTTACGCCTGCGGACTTGACAGCTCTGTTAAATGATTTAGCAATAAATCAAATAGCAACTAGCAAGGTTGAAACAGGAATACAA
CAAAAATCCTATTTATAGAGTTTTATATCTTTTTATAGGATTTTATAGGTTTGTAGGAAC
Protein section
ORF number : 2

 

ORF 1
LengthBeginEndStrandFusion ORF
639 bp212 aa101739+No
ORF function : Transposase
Chemistry : Serine

ORF sequence :

MNKLLSIGQASKALGVTIQTLRNWDKKGLLKPDDMTKGGERRYKLETLKAINKNLVFNKDSLKTIAYARVSSHDQKDDLIRQVQVLELYCSKQGFNYEVI
QDLGSGMNYYKKGLTKLLNQILDGKVKRLVLTHKDRLLRFGAELVFAICEAKEVEVIIINKGEESVKFEEELAKDVLEIITVFSARLYGSRSKKNKKLLD
EMQEVVVENVSK

 

Blast result :
ORF 2
LengthBeginEndStrandFusion ORF
1293 bp430 aa7262018+No
ORF function : Accessory Gene
AG : TnpB

ORF sequence :

MSANNNELISISHKIELKPNNKAKTHFKKAFGCARLAYNWGLAKWQEYYKQGIKVTHLDLKKEFNAIKKEQFPFVYEVSKYATQQPFLNLNLAFQKFFRD
LKQGKVSYPKFKKKKDNFGSYYIGGDQAIIKDEKYLKVPNLGLVKMKEKLRFNGKINSFTISQSADKFFVSFSMQISKDEYLKTHNKAKNNNLALGIDVG
LKSFLSLSNGLEIKAPKPLAKFNRLMIKRARQLSKKQHAKTKQEALQGIKKSSNYLKASIKLNKLHRKIANIRSDFLHKLTSSLVANAKYFCLEDLNVKG
MMSNHRLAKSISDVSFYEFKRQLEYKSSYNDKEIYQVDRFYPSSKLCSNCGTIKENLALKDRVYICDECEISIDRDYNASLNLLSQLKQKIGKVLAEFTP
ADLTALLNDLAINQIATSKVETGIQQKSYL

 

Blast result :
Comments
ISChh1 is 97% (ORFA : the transposase) and 85% (TnpB) aa similar to ISCef1.
References
1] ISfinder submission
2] Brunos Lopes (2016) Direct submission
3] Miller,W. and Yee,E. (2016) Direct submission GenBank.