ISPlba1

  • Family IS1182
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
LIZP01000234 ND Planctomycetes bacterium
Planctomycetes bacterium DG_20
DNA section
IS Length : 1584 bp

Ends


IR Length : 16/17

IRL : GAGCCTGTCCAAGAATTCCCTCTTGACACGTTTGGTATACTGCGGGCGTC
IRR : GAGCCTGTCCAGGAATTGAGGATCGTTTTTTTGTCGTACGCGTCTCAGGG

Insertion site


Left flankDirect repeatRight flankDR Length
ATTCCCTATTCCCTGCCTTCAGGAGCTAGGCAGGCACTTGACTTCGGCGTTTCA4

DNA sequence

GAGCCTGTCCAAGAATTCCCTCTTGACACGTTTGGTATACTGCGGGCGTCCTTGACAAAAGGAGCCAGCCTGTGAGCGTGCGATTCAAGCCGCTGGAGCG
GGATCAAGCGTTCCTGTTGCCGCCGTCGCTTCAGGAGTGGCTGCCGGCGGGCGACCTGGCCTACTTCGTCATCGACGTGGTGGACCAGCTCGACCTGAGC
GCCGTCGTCCGGTACTACGAGGTTCGGGAGGACGGCACGTCGAAGGCGGCCAGCGGCCAGCCGGCGTTCCATCCGAAGCTGATGACGGCGTTGGTGTTGT
ACGCGTACGCCTTGGGGACGCCGAGTTCGCGTCAGATCGCCCGGCTGTGCGAGCGGGACGCGGGGTACCGCATCGTGGCGGCCAATCAGCAGCCGGACTT
TCGGACGATCTCGGAGTTCCGACGGATTCATCTGAAGGCCTTGGGCGCCCTGTTCGTTCAGGTCCTGCACCTGGCGCGGGAGGCGGGGCTGGTGGCGTTG
GGGCACGTGGCGTTGGACGGGACGAAGGTGAAGGCCAACGCCTCGAAGCACAAGGCGATGAGTTACGCGCGGCTGGTGGAGCGTGAAGCCCAGTACCAGG
AGCAGGTCGAGGCGTTGCTGGCCCGGGCCGAACAGACCGACGCGGCGGAGGACGAACGGTACGGCCCGGACCGCCGGGGCGACGAACTGCCGCAGGAACT
TCAGTTCCGCCAGAAGCGTTTGGAGCGGCTGCGTGAGGCCAAACGGACGCTGGAGGAGGCCGCGAAGGCCCAGGCGCGGGCCGAAGGGAAACTGGACGCC
AACGACCGGCCCAAGCCGCCGGCTCGGGGCCATCCCCCGAAGGTGCCGCCGGGGACGCCCCGGCCCAAGGAGCAGTACAACTTCACCGATCCCGAGAGCC
ACATCATGAAGATGAGCCACGGGGGCTTCGATCAGGCGTACAACTGCCAGGCCGCCGTGGACGGCCAGGCCCAGGTGATCGTGGCATGCCAGGCCACGGC
CGCCCCGAACGACAAGGAGCAACTGGAGCCGCTGGTGGAGCAGGTGGAGGCGAACCTGGGCGAGCGGCCGAAGGAGGTCAGTGCGGACTCGGGTTACTAC
AGCGAGGCGAACGTGCGGAGTGTGCGTCGGCGGGGCATCGACGACTACGTCTGCCCGGACCGGATCGAGCACGGCCGGGAACCGCCGCCGGTGCGAGGGC
GGATGCCGAAGGACCTGTCGTTCATCGACCGGGTGCGTCGCAAGCTCGGGACGAAGCAGGGCCGGGCGCGGTACGCCTTGCGTAAACAGATCGCCGAGCC
GGTCTTCGGTCAGATGAAACAGGGACGGGGTCTGCGCCAGTTCCTGCTGCGTGGCCTGGAGAAGGTCGATGGGGAGTGGTCGCTGTGGTGCACGGGCCAC
AACGTGCTGAAGGTGTGGGCGGCCGCCGCCGGGTAGCGGCCAGGAGGCGGCGCGCCCATCCGACGCCGCGCGCCATCCTCCGCCTTCCGCCATGCCCGCA
ACCCCAGCTTCCCCTTCGAGCCTCATCACCGCCACCCTGAGACGCGTACGACAAAAAAACGATCCTCAATTCCTGGACAGGCTC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1365 bp454 aa721436+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MSVRFKPLERDQAFLLPPSLQEWLPAGDLAYFVIDVVDQLDLSAVVRYYEVREDGTSKAASGQPAFHPKLMTALVLYAYALGTPSSRQIARLCERDAGYR
IVAANQQPDFRTISEFRRIHLKALGALFVQVLHLAREAGLVALGHVALDGTKVKANASKHKAMSYARLVEREAQYQEQVEALLARAEQTDAAEDERYGPD
RRGDELPQELQFRQKRLERLREAKRTLEEAAKAQARAEGKLDANDRPKPPARGHPPKVPPGTPRPKEQYNFTDPESHIMKMSHGGFDQAYNCQAAVDGQA
QVIVACQATAAPNDKEQLEPLVEQVEANLGERPKEVSADSGYYSEANVRSVRRRGIDDYVCPDRIEHGREPPPVRGRMPKDLSFIDRVRRKLGTKQGRAR
YALRKQIAEPVFGQMKQGRGLRQFLLRGLEKVDGEWSLWCTGHNVLKVWAAAAG

 

Blast result :
Comments
ISPlba1 is 67% aa similar to ISSyth1.
References
1] ISfinder annotation (2016)
2] Baker,B.J., Lazar,C.S., Teske,A.P. and Dick,G.J. (2015) Microbiome 3, 14.