ISPlba1
- Family IS1182
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
LIZP01000234 | ND | Planctomycetes bacterium | Planctomycetes bacterium DG_20 |
DNA section
IS Length : 1584 bp
Ends
IR Length : 16/17
IRL : GAGCCTGTCCAAGAATTCCCTCTTGACACGTTTGGTATACTGCGGGCGTC
IRR : GAGCCTGTCCAGGAATTGAGGATCGTTTTTTTGTCGTACGCGTCTCAGGG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
ATTCCCTATTCCCTGCCTTCAGGAG | CTAG | GCAGGCACTTGACTTCGGCGTTTCA | 4 |
DNA sequence
GAGCCTGTCCAAGAATTCCCTCTTGACACGTTTGGTATACTGCGGGCGTCCTTGACAAAAGGAGCCAGCCTGTGAGCGTGCGATTCAAGCCGCTGGAGCG
GGATCAAGCGTTCCTGTTGCCGCCGTCGCTTCAGGAGTGGCTGCCGGCGGGCGACCTGGCCTACTTCGTCATCGACGTGGTGGACCAGCTCGACCTGAGC
GCCGTCGTCCGGTACTACGAGGTTCGGGAGGACGGCACGTCGAAGGCGGCCAGCGGCCAGCCGGCGTTCCATCCGAAGCTGATGACGGCGTTGGTGTTGT
ACGCGTACGCCTTGGGGACGCCGAGTTCGCGTCAGATCGCCCGGCTGTGCGAGCGGGACGCGGGGTACCGCATCGTGGCGGCCAATCAGCAGCCGGACTT
TCGGACGATCTCGGAGTTCCGACGGATTCATCTGAAGGCCTTGGGCGCCCTGTTCGTTCAGGTCCTGCACCTGGCGCGGGAGGCGGGGCTGGTGGCGTTG
GGGCACGTGGCGTTGGACGGGACGAAGGTGAAGGCCAACGCCTCGAAGCACAAGGCGATGAGTTACGCGCGGCTGGTGGAGCGTGAAGCCCAGTACCAGG
AGCAGGTCGAGGCGTTGCTGGCCCGGGCCGAACAGACCGACGCGGCGGAGGACGAACGGTACGGCCCGGACCGCCGGGGCGACGAACTGCCGCAGGAACT
TCAGTTCCGCCAGAAGCGTTTGGAGCGGCTGCGTGAGGCCAAACGGACGCTGGAGGAGGCCGCGAAGGCCCAGGCGCGGGCCGAAGGGAAACTGGACGCC
AACGACCGGCCCAAGCCGCCGGCTCGGGGCCATCCCCCGAAGGTGCCGCCGGGGACGCCCCGGCCCAAGGAGCAGTACAACTTCACCGATCCCGAGAGCC
ACATCATGAAGATGAGCCACGGGGGCTTCGATCAGGCGTACAACTGCCAGGCCGCCGTGGACGGCCAGGCCCAGGTGATCGTGGCATGCCAGGCCACGGC
CGCCCCGAACGACAAGGAGCAACTGGAGCCGCTGGTGGAGCAGGTGGAGGCGAACCTGGGCGAGCGGCCGAAGGAGGTCAGTGCGGACTCGGGTTACTAC
AGCGAGGCGAACGTGCGGAGTGTGCGTCGGCGGGGCATCGACGACTACGTCTGCCCGGACCGGATCGAGCACGGCCGGGAACCGCCGCCGGTGCGAGGGC
GGATGCCGAAGGACCTGTCGTTCATCGACCGGGTGCGTCGCAAGCTCGGGACGAAGCAGGGCCGGGCGCGGTACGCCTTGCGTAAACAGATCGCCGAGCC
GGTCTTCGGTCAGATGAAACAGGGACGGGGTCTGCGCCAGTTCCTGCTGCGTGGCCTGGAGAAGGTCGATGGGGAGTGGTCGCTGTGGTGCACGGGCCAC
AACGTGCTGAAGGTGTGGGCGGCCGCCGCCGGGTAGCGGCCAGGAGGCGGCGCGCCCATCCGACGCCGCGCGCCATCCTCCGCCTTCCGCCATGCCCGCA
ACCCCAGCTTCCCCTTCGAGCCTCATCACCGCCACCCTGAGACGCGTACGACAAAAAAACGATCCTCAATTCCTGGACAGGCTC
GGATCAAGCGTTCCTGTTGCCGCCGTCGCTTCAGGAGTGGCTGCCGGCGGGCGACCTGGCCTACTTCGTCATCGACGTGGTGGACCAGCTCGACCTGAGC
GCCGTCGTCCGGTACTACGAGGTTCGGGAGGACGGCACGTCGAAGGCGGCCAGCGGCCAGCCGGCGTTCCATCCGAAGCTGATGACGGCGTTGGTGTTGT
ACGCGTACGCCTTGGGGACGCCGAGTTCGCGTCAGATCGCCCGGCTGTGCGAGCGGGACGCGGGGTACCGCATCGTGGCGGCCAATCAGCAGCCGGACTT
TCGGACGATCTCGGAGTTCCGACGGATTCATCTGAAGGCCTTGGGCGCCCTGTTCGTTCAGGTCCTGCACCTGGCGCGGGAGGCGGGGCTGGTGGCGTTG
GGGCACGTGGCGTTGGACGGGACGAAGGTGAAGGCCAACGCCTCGAAGCACAAGGCGATGAGTTACGCGCGGCTGGTGGAGCGTGAAGCCCAGTACCAGG
AGCAGGTCGAGGCGTTGCTGGCCCGGGCCGAACAGACCGACGCGGCGGAGGACGAACGGTACGGCCCGGACCGCCGGGGCGACGAACTGCCGCAGGAACT
TCAGTTCCGCCAGAAGCGTTTGGAGCGGCTGCGTGAGGCCAAACGGACGCTGGAGGAGGCCGCGAAGGCCCAGGCGCGGGCCGAAGGGAAACTGGACGCC
AACGACCGGCCCAAGCCGCCGGCTCGGGGCCATCCCCCGAAGGTGCCGCCGGGGACGCCCCGGCCCAAGGAGCAGTACAACTTCACCGATCCCGAGAGCC
ACATCATGAAGATGAGCCACGGGGGCTTCGATCAGGCGTACAACTGCCAGGCCGCCGTGGACGGCCAGGCCCAGGTGATCGTGGCATGCCAGGCCACGGC
CGCCCCGAACGACAAGGAGCAACTGGAGCCGCTGGTGGAGCAGGTGGAGGCGAACCTGGGCGAGCGGCCGAAGGAGGTCAGTGCGGACTCGGGTTACTAC
AGCGAGGCGAACGTGCGGAGTGTGCGTCGGCGGGGCATCGACGACTACGTCTGCCCGGACCGGATCGAGCACGGCCGGGAACCGCCGCCGGTGCGAGGGC
GGATGCCGAAGGACCTGTCGTTCATCGACCGGGTGCGTCGCAAGCTCGGGACGAAGCAGGGCCGGGCGCGGTACGCCTTGCGTAAACAGATCGCCGAGCC
GGTCTTCGGTCAGATGAAACAGGGACGGGGTCTGCGCCAGTTCCTGCTGCGTGGCCTGGAGAAGGTCGATGGGGAGTGGTCGCTGTGGTGCACGGGCCAC
AACGTGCTGAAGGTGTGGGCGGCCGCCGCCGGGTAGCGGCCAGGAGGCGGCGCGCCCATCCGACGCCGCGCGCCATCCTCCGCCTTCCGCCATGCCCGCA
ACCCCAGCTTCCCCTTCGAGCCTCATCACCGCCACCCTGAGACGCGTACGACAAAAAAACGATCCTCAATTCCTGGACAGGCTC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1365 bp | 454 aa | 72 | 1436 | + | No |
Chemistry : DDE
ORF sequence :
MSVRFKPLERDQAFLLPPSLQEWLPAGDLAYFVIDVVDQLDLSAVVRYYEVREDGTSKAASGQPAFHPKLMTALVLYAYALGTPSSRQIARLCERDAGYR
IVAANQQPDFRTISEFRRIHLKALGALFVQVLHLAREAGLVALGHVALDGTKVKANASKHKAMSYARLVEREAQYQEQVEALLARAEQTDAAEDERYGPD
RRGDELPQELQFRQKRLERLREAKRTLEEAAKAQARAEGKLDANDRPKPPARGHPPKVPPGTPRPKEQYNFTDPESHIMKMSHGGFDQAYNCQAAVDGQA
QVIVACQATAAPNDKEQLEPLVEQVEANLGERPKEVSADSGYYSEANVRSVRRRGIDDYVCPDRIEHGREPPPVRGRMPKDLSFIDRVRRKLGTKQGRAR
YALRKQIAEPVFGQMKQGRGLRQFLLRGLEKVDGEWSLWCTGHNVLKVWAAAAG
IVAANQQPDFRTISEFRRIHLKALGALFVQVLHLAREAGLVALGHVALDGTKVKANASKHKAMSYARLVEREAQYQEQVEALLARAEQTDAAEDERYGPD
RRGDELPQELQFRQKRLERLREAKRTLEEAAKAQARAEGKLDANDRPKPPARGHPPKVPPGTPRPKEQYNFTDPESHIMKMSHGGFDQAYNCQAAVDGQA
QVIVACQATAAPNDKEQLEPLVEQVEANLGERPKEVSADSGYYSEANVRSVRRRGIDDYVCPDRIEHGREPPPVRGRMPKDLSFIDRVRRKLGTKQGRAR
YALRKQIAEPVFGQMKQGRGLRQFLLRGLEKVDGEWSLWCTGHNVLKVWAAAAG
Blast result :
Comments
ISPlba1 is 67% aa similar to ISSyth1.
References
1] ISfinder annotation (2016)
2] Baker,B.J., Lazar,C.S., Teske,A.P. and Dick,G.J. (2015) Microbiome 3, 14.
2] Baker,B.J., Lazar,C.S., Teske,A.P. and Dick,G.J. (2015) Microbiome 3, 14.