ISStsp11

  • Family IS1182
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
JZWZ01000093 ND Streptomyces sp.
Streptomyces sp. NRRL B-1568
DNA section
IS Length : 2197 bp

Ends


IR Length : 25/31

IRL : GAGCGTGGGTCAGTAACGGGAAGTTGGTCTGGCGTGTGTGATCGCCGGTA
IRR : GAGCGTGGGTCAGTAACGAGCAACTGGCCGGAGGCCGTGATCGCCTGGAT

Insertion site


Left flankDirect repeatRight flankDR Length
TAGCTCCGCACGTGATCGCCTGGATAAGCCCTAGGGCGTGTCCGATGGGTCAGCACAGGCCCCGCGACG4

DNA sequence

GAGCGTGGGTCAGTAACGGGAAGTTGGTCTGGCGTGTGTGATCGCCGGTAACCGGGCGTCTGTCTGGTCCGGTGTGCCGGTGGCGGGTGCGGGACCTGCC
GCTCACCGTCCTGATGGAGCCCGCCATGCTCGCCCTGCGCCGCCTCACCCAGGAGCACGAGTCCGCCCGCCGCAACGTCTGAGGGGCAGCGGGGCACTCA
GCGGTCTGCCGCGCTACCTACGGGAGGCACGAACCCCGGCGACGACGATCGCGATCAGGATGGACACCAGGAAGAGCGTCATCGCAGGCCACAGCGGATC
GCCGTTGATGAGTGCGTTCATGAGCGTGCGGAAACCGGCACCGATGAAATGCATGCGCGTACCGTAGCGTCACCCGTCGCCAGGCGGAGCGCCAGAGTTC
CACGGACAGGAATCCCCGCCGTCGTCGCAGTAGCCGTCCCCCTCATCCGCTGAACCACTGCGCCCTCGCTCGGCTACGGCCTGGCGGGGGTGCTTCATCG
TCCCGGAAGCGTGTAGCCCGTGTACGGATCGTGATCATTCATGCGGGAAAATCCCGGTATGCGTGATCAGGAGAGGCTGTTCGAGGCCAAGCCGGTCGAA
CCGAAGCGACCGCAGGCGCGTGCGGCCGGGATGGGCAAGAAGTTCCGGGCGTTCGACCCGGGCCAGGTGCTGCTCCTGCCGCCATCGCTGGACGACTGGC
TACCCGAAGACCACCTGGCCCGGTTCGTCGCCGACCTGGTCGACGAGGTACTCGACCTGTCCCCGGTCCTGGCCGACTACACCGAAAAGCGCGGCTACCC
GCCCTACGGCCCCAGGCTGATGGTCCGCCTGCTCATCTACGGCTACACCACCGGGGTGCGCTCCTCCCGGGCGATCGAGCGCAAGTGTGTCGACGACGTA
GCGTTCCGGTTCCTGGCCGCCGACCAGGCCCCGGACTTCCGCTCGATCGCCCGGTTCCGCCGCCGCCACCTGGACGCCCTCGCCGACCTGTTCCTGCAGT
CCCTGCGCCTCGCGCAGGAACTCGGCATGGTCAAGATGGGCCGCGTCGCTCTGGACGGCACGAAGCTGGAGGCCAACGCCTCCAAGCACAAGGCCATGAG
CTACGGTCGGCTCATCGACAAGGAGGAACGCGTCGAGGCCGAGATCGCCGCCCTGGAGGCCATGACCGCCGCCCTGCTGGCCGACGCCGAGGCGACCGAC
ACCGCCCAGGACGCCCGGTTCGGCGTCGACGGCAAGGACACGGACCTGCCCGCCGAGCTGGACCGCCGCGAGAAGCGCCTCGCGCGGTTGCAGGCCGCCC
GCGCCCAGATCGAGGCCGAGGCCACCGACAAGGCTCGCCGCCACGCCCAGGACAAGGAACGGAGCCGCCAGGCAAGCGCGGGCGGCAGCGACGAGCAGGC
CGTCATCGACGCCGGCGAGAAGGCCGCCGCCAAGGCCCGCCCGAAGCCGAAGAACCAGGCCAACTTCACCGATCCCGACTCGCGGATCATGAAGAACAGC
GACGGCGCCTACATCCAGGCCTACAACGCCCAGGCCGTCGTCGACGAGCAGCACCAGATCATCACCGCCGCCGACGTGACGACCAACGCCTCGGACGCGC
TGAACTACACCGCCATGCTCGACCAGTCCGCCGCCAACACCGGTACCCACCCCGAGCAGGCCCTCGTCGATGCCGGATACTGCTCCGAGGCCAACCTCGA
AGCCGCGAAAGACCGCCAACTGTCCTGTGGCACCGACACCTTCATGGCCACCGGCCGCCTCGGCCACGACGAGCAGGTTCCGCCCGCACCCCGCGGACGC
ATCCCGAAGGACGCCACGCTGAAGGAGCGGATGGCCCGCAAACTGCGGACCAAGCCCGGCCGGAAGGCCTACAGCCGCCGCAAGGCCATCGTCGAACCCG
TCTTCGGCCAGATCATGACCTGCCAGGACGGCCGCCGGCTCCTCCTGCGCGGCGAGGACGCAGCCCGAGGAGAGTGGCGCCTGCTGGCCGCCTGCCACAA
CTTCCGGAAGATCTTCCGCCACACCGCAACCGCAGGACTCGCCGCCGCGATCGCCTGAACGCCCCGGCCACCGGCCTCTTCCACGACGTCCCGGACCGGC
AGTCCCATCCATCAGCGCCGGAAACCCGGGCCGGATTCCCCAGACCGATCCAGGCGATCACGGCCTCCGGCCAGTTGCTCGTTACTGACCCACGCTC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1482 bp493 aa5772058+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MFEAKPVEPKRPQARAAGMGKKFRAFDPGQVLLLPPSLDDWLPEDHLARFVADLVDEVLDLSPVLADYTEKRGYPPYGPRLMVRLLIYGYTTGVRSSRAI
ERKCVDDVAFRFLAADQAPDFRSIARFRRRHLDALADLFLQSLRLAQELGMVKMGRVALDGTKLEANASKHKAMSYGRLIDKEERVEAEIAALEAMTAAL
LADAEATDTAQDARFGVDGKDTDLPAELDRREKRLARLQAARAQIEAEATDKARRHAQDKERSRQASAGGSDEQAVIDAGEKAAAKARPKPKNQANFTDP
DSRIMKNSDGAYIQAYNAQAVVDEQHQIITAADVTTNASDALNYTAMLDQSAANTGTHPEQALVDAGYCSEANLEAAKDRQLSCGTDTFMATGRLGHDEQ
VPPAPRGRIPKDATLKERMARKLRTKPGRKAYSRRKAIVEPVFGQIMTCQDGRRLLLRGEDAARGEWRLLAACHNFRKIFRHTATAGLAAAIA

 

Blast result :
Comments
ISStsp11 is 67% aa similar to ISCef1.
References
1] ISfinder annotation (2016)
2] Ju,K.-S., Doroghazi,J.R. and Metcalf,W. (2015) Direct submission GenBank.