ISStsp11
- Family IS1182
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
JZWZ01000093 | ND | Streptomyces sp. | Streptomyces sp. NRRL B-1568 |
DNA section
IS Length : 2197 bp
Ends
IR Length : 25/31
IRL : GAGCGTGGGTCAGTAACGGGAAGTTGGTCTGGCGTGTGTGATCGCCGGTA
IRR : GAGCGTGGGTCAGTAACGAGCAACTGGCCGGAGGCCGTGATCGCCTGGAT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TAGCTCCGCACGTGATCGCCTGGATAAGCC | CTAG | GGCGTGTCCGATGGGTCAGCACAGGCCCCGCGACG | 4 |
DNA sequence
GAGCGTGGGTCAGTAACGGGAAGTTGGTCTGGCGTGTGTGATCGCCGGTAACCGGGCGTCTGTCTGGTCCGGTGTGCCGGTGGCGGGTGCGGGACCTGCC
GCTCACCGTCCTGATGGAGCCCGCCATGCTCGCCCTGCGCCGCCTCACCCAGGAGCACGAGTCCGCCCGCCGCAACGTCTGAGGGGCAGCGGGGCACTCA
GCGGTCTGCCGCGCTACCTACGGGAGGCACGAACCCCGGCGACGACGATCGCGATCAGGATGGACACCAGGAAGAGCGTCATCGCAGGCCACAGCGGATC
GCCGTTGATGAGTGCGTTCATGAGCGTGCGGAAACCGGCACCGATGAAATGCATGCGCGTACCGTAGCGTCACCCGTCGCCAGGCGGAGCGCCAGAGTTC
CACGGACAGGAATCCCCGCCGTCGTCGCAGTAGCCGTCCCCCTCATCCGCTGAACCACTGCGCCCTCGCTCGGCTACGGCCTGGCGGGGGTGCTTCATCG
TCCCGGAAGCGTGTAGCCCGTGTACGGATCGTGATCATTCATGCGGGAAAATCCCGGTATGCGTGATCAGGAGAGGCTGTTCGAGGCCAAGCCGGTCGAA
CCGAAGCGACCGCAGGCGCGTGCGGCCGGGATGGGCAAGAAGTTCCGGGCGTTCGACCCGGGCCAGGTGCTGCTCCTGCCGCCATCGCTGGACGACTGGC
TACCCGAAGACCACCTGGCCCGGTTCGTCGCCGACCTGGTCGACGAGGTACTCGACCTGTCCCCGGTCCTGGCCGACTACACCGAAAAGCGCGGCTACCC
GCCCTACGGCCCCAGGCTGATGGTCCGCCTGCTCATCTACGGCTACACCACCGGGGTGCGCTCCTCCCGGGCGATCGAGCGCAAGTGTGTCGACGACGTA
GCGTTCCGGTTCCTGGCCGCCGACCAGGCCCCGGACTTCCGCTCGATCGCCCGGTTCCGCCGCCGCCACCTGGACGCCCTCGCCGACCTGTTCCTGCAGT
CCCTGCGCCTCGCGCAGGAACTCGGCATGGTCAAGATGGGCCGCGTCGCTCTGGACGGCACGAAGCTGGAGGCCAACGCCTCCAAGCACAAGGCCATGAG
CTACGGTCGGCTCATCGACAAGGAGGAACGCGTCGAGGCCGAGATCGCCGCCCTGGAGGCCATGACCGCCGCCCTGCTGGCCGACGCCGAGGCGACCGAC
ACCGCCCAGGACGCCCGGTTCGGCGTCGACGGCAAGGACACGGACCTGCCCGCCGAGCTGGACCGCCGCGAGAAGCGCCTCGCGCGGTTGCAGGCCGCCC
GCGCCCAGATCGAGGCCGAGGCCACCGACAAGGCTCGCCGCCACGCCCAGGACAAGGAACGGAGCCGCCAGGCAAGCGCGGGCGGCAGCGACGAGCAGGC
CGTCATCGACGCCGGCGAGAAGGCCGCCGCCAAGGCCCGCCCGAAGCCGAAGAACCAGGCCAACTTCACCGATCCCGACTCGCGGATCATGAAGAACAGC
GACGGCGCCTACATCCAGGCCTACAACGCCCAGGCCGTCGTCGACGAGCAGCACCAGATCATCACCGCCGCCGACGTGACGACCAACGCCTCGGACGCGC
TGAACTACACCGCCATGCTCGACCAGTCCGCCGCCAACACCGGTACCCACCCCGAGCAGGCCCTCGTCGATGCCGGATACTGCTCCGAGGCCAACCTCGA
AGCCGCGAAAGACCGCCAACTGTCCTGTGGCACCGACACCTTCATGGCCACCGGCCGCCTCGGCCACGACGAGCAGGTTCCGCCCGCACCCCGCGGACGC
ATCCCGAAGGACGCCACGCTGAAGGAGCGGATGGCCCGCAAACTGCGGACCAAGCCCGGCCGGAAGGCCTACAGCCGCCGCAAGGCCATCGTCGAACCCG
TCTTCGGCCAGATCATGACCTGCCAGGACGGCCGCCGGCTCCTCCTGCGCGGCGAGGACGCAGCCCGAGGAGAGTGGCGCCTGCTGGCCGCCTGCCACAA
CTTCCGGAAGATCTTCCGCCACACCGCAACCGCAGGACTCGCCGCCGCGATCGCCTGAACGCCCCGGCCACCGGCCTCTTCCACGACGTCCCGGACCGGC
AGTCCCATCCATCAGCGCCGGAAACCCGGGCCGGATTCCCCAGACCGATCCAGGCGATCACGGCCTCCGGCCAGTTGCTCGTTACTGACCCACGCTC
GCTCACCGTCCTGATGGAGCCCGCCATGCTCGCCCTGCGCCGCCTCACCCAGGAGCACGAGTCCGCCCGCCGCAACGTCTGAGGGGCAGCGGGGCACTCA
GCGGTCTGCCGCGCTACCTACGGGAGGCACGAACCCCGGCGACGACGATCGCGATCAGGATGGACACCAGGAAGAGCGTCATCGCAGGCCACAGCGGATC
GCCGTTGATGAGTGCGTTCATGAGCGTGCGGAAACCGGCACCGATGAAATGCATGCGCGTACCGTAGCGTCACCCGTCGCCAGGCGGAGCGCCAGAGTTC
CACGGACAGGAATCCCCGCCGTCGTCGCAGTAGCCGTCCCCCTCATCCGCTGAACCACTGCGCCCTCGCTCGGCTACGGCCTGGCGGGGGTGCTTCATCG
TCCCGGAAGCGTGTAGCCCGTGTACGGATCGTGATCATTCATGCGGGAAAATCCCGGTATGCGTGATCAGGAGAGGCTGTTCGAGGCCAAGCCGGTCGAA
CCGAAGCGACCGCAGGCGCGTGCGGCCGGGATGGGCAAGAAGTTCCGGGCGTTCGACCCGGGCCAGGTGCTGCTCCTGCCGCCATCGCTGGACGACTGGC
TACCCGAAGACCACCTGGCCCGGTTCGTCGCCGACCTGGTCGACGAGGTACTCGACCTGTCCCCGGTCCTGGCCGACTACACCGAAAAGCGCGGCTACCC
GCCCTACGGCCCCAGGCTGATGGTCCGCCTGCTCATCTACGGCTACACCACCGGGGTGCGCTCCTCCCGGGCGATCGAGCGCAAGTGTGTCGACGACGTA
GCGTTCCGGTTCCTGGCCGCCGACCAGGCCCCGGACTTCCGCTCGATCGCCCGGTTCCGCCGCCGCCACCTGGACGCCCTCGCCGACCTGTTCCTGCAGT
CCCTGCGCCTCGCGCAGGAACTCGGCATGGTCAAGATGGGCCGCGTCGCTCTGGACGGCACGAAGCTGGAGGCCAACGCCTCCAAGCACAAGGCCATGAG
CTACGGTCGGCTCATCGACAAGGAGGAACGCGTCGAGGCCGAGATCGCCGCCCTGGAGGCCATGACCGCCGCCCTGCTGGCCGACGCCGAGGCGACCGAC
ACCGCCCAGGACGCCCGGTTCGGCGTCGACGGCAAGGACACGGACCTGCCCGCCGAGCTGGACCGCCGCGAGAAGCGCCTCGCGCGGTTGCAGGCCGCCC
GCGCCCAGATCGAGGCCGAGGCCACCGACAAGGCTCGCCGCCACGCCCAGGACAAGGAACGGAGCCGCCAGGCAAGCGCGGGCGGCAGCGACGAGCAGGC
CGTCATCGACGCCGGCGAGAAGGCCGCCGCCAAGGCCCGCCCGAAGCCGAAGAACCAGGCCAACTTCACCGATCCCGACTCGCGGATCATGAAGAACAGC
GACGGCGCCTACATCCAGGCCTACAACGCCCAGGCCGTCGTCGACGAGCAGCACCAGATCATCACCGCCGCCGACGTGACGACCAACGCCTCGGACGCGC
TGAACTACACCGCCATGCTCGACCAGTCCGCCGCCAACACCGGTACCCACCCCGAGCAGGCCCTCGTCGATGCCGGATACTGCTCCGAGGCCAACCTCGA
AGCCGCGAAAGACCGCCAACTGTCCTGTGGCACCGACACCTTCATGGCCACCGGCCGCCTCGGCCACGACGAGCAGGTTCCGCCCGCACCCCGCGGACGC
ATCCCGAAGGACGCCACGCTGAAGGAGCGGATGGCCCGCAAACTGCGGACCAAGCCCGGCCGGAAGGCCTACAGCCGCCGCAAGGCCATCGTCGAACCCG
TCTTCGGCCAGATCATGACCTGCCAGGACGGCCGCCGGCTCCTCCTGCGCGGCGAGGACGCAGCCCGAGGAGAGTGGCGCCTGCTGGCCGCCTGCCACAA
CTTCCGGAAGATCTTCCGCCACACCGCAACCGCAGGACTCGCCGCCGCGATCGCCTGAACGCCCCGGCCACCGGCCTCTTCCACGACGTCCCGGACCGGC
AGTCCCATCCATCAGCGCCGGAAACCCGGGCCGGATTCCCCAGACCGATCCAGGCGATCACGGCCTCCGGCCAGTTGCTCGTTACTGACCCACGCTC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1482 bp | 493 aa | 577 | 2058 | + | No |
Chemistry : DDE
ORF sequence :
MFEAKPVEPKRPQARAAGMGKKFRAFDPGQVLLLPPSLDDWLPEDHLARFVADLVDEVLDLSPVLADYTEKRGYPPYGPRLMVRLLIYGYTTGVRSSRAI
ERKCVDDVAFRFLAADQAPDFRSIARFRRRHLDALADLFLQSLRLAQELGMVKMGRVALDGTKLEANASKHKAMSYGRLIDKEERVEAEIAALEAMTAAL
LADAEATDTAQDARFGVDGKDTDLPAELDRREKRLARLQAARAQIEAEATDKARRHAQDKERSRQASAGGSDEQAVIDAGEKAAAKARPKPKNQANFTDP
DSRIMKNSDGAYIQAYNAQAVVDEQHQIITAADVTTNASDALNYTAMLDQSAANTGTHPEQALVDAGYCSEANLEAAKDRQLSCGTDTFMATGRLGHDEQ
VPPAPRGRIPKDATLKERMARKLRTKPGRKAYSRRKAIVEPVFGQIMTCQDGRRLLLRGEDAARGEWRLLAACHNFRKIFRHTATAGLAAAIA
ERKCVDDVAFRFLAADQAPDFRSIARFRRRHLDALADLFLQSLRLAQELGMVKMGRVALDGTKLEANASKHKAMSYGRLIDKEERVEAEIAALEAMTAAL
LADAEATDTAQDARFGVDGKDTDLPAELDRREKRLARLQAARAQIEAEATDKARRHAQDKERSRQASAGGSDEQAVIDAGEKAAAKARPKPKNQANFTDP
DSRIMKNSDGAYIQAYNAQAVVDEQHQIITAADVTTNASDALNYTAMLDQSAANTGTHPEQALVDAGYCSEANLEAAKDRQLSCGTDTFMATGRLGHDEQ
VPPAPRGRIPKDATLKERMARKLRTKPGRKAYSRRKAIVEPVFGQIMTCQDGRRLLLRGEDAARGEWRLLAACHNFRKIFRHTATAGLAAAIA
Blast result :
Comments
ISStsp11 is 67% aa similar to ISCef1.
References
1] ISfinder annotation (2016)
2] Ju,K.-S., Doroghazi,J.R. and Metcalf,W. (2015) Direct submission GenBank.
2] Ju,K.-S., Doroghazi,J.R. and Metcalf,W. (2015) Direct submission GenBank.