ISThba1
- Family IS1182
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
LGFL01000056 | ND | Thermoanaerobacterales bacterium | Thermoanaerobacterales bacterium 50_218 |
DNA section
IS Length : 1541 bp
Ends
IR Length : 18/21
IRL : CAGCCTGTGTGAGATTTTCTCAAAAAATTTTCCTTGCCAGGCATGATTTT
IRR : CAGCCTGTGTTAGAATTGCTCTCTGAAAACTCCATACCGGCGCTCTCGCT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
CGGAGTAACG | CTAG | GCGATTCGGGG | 4 |
DNA sequence
CAGCCTGTGTGAGATTTTCTCAAAAAATTTTCCTTGCCAGGCATGATTTTGGCCTTCGACGTCGAATAAGTAAGTTATGAAGAAATTCAAACCTTATCAA
CCCAACCAAACCATCCTTTTCCCGCCGTCCCCGCAGGACTGGTTGCCCGAAGATCACGTGGCCTACGTTATTGACGAGGTGGTGGAGCAACTCGACCTTT
CGGCCATCTACAATGATTACCGTGATTCTCGTGGGCAACCGCCCTACCAGCCGAAGATGATGGTCAAGGTGCTGATCTACGCCGTGATCAAGGGCATCCA
CTCATCGCGCAAGATCGAAACTGCCCTTTACGAGGACGTGGGCTTCCGGTTTCTCGCGGGGAACCAGCAACCCGACCACTGGACCATCGCCGCCTTCCGG
CGGCGGCACCACCGGGCGCTGGGCGACCTTTTTGTGCAAACCGTAAAGCTCGCCCAGAGAGCCGGCCTGGTGAAGCTCGGGCACGTATCCCTCGACGGCA
CGAAGATCAAAGCCTACGCCTCCAAACACAGCGCCATGAGCTACGGACGGATGAAGCAGGAGGAAGAGCGGCTGCGCCGGGAAATAGACGCGATCCTCGA
CCTGATGGAGAAAACCGACCGGGCGGAGGACAAGAAATACGGCCACCGCCGGGGCGATGAGCTCCCCGCCGAGCTAGCCACACGGCAGAAGCGCCTGGAG
GCCATCCGGCGCGCCAGGGAGGAACTCGAGGCCGAGGCCCGCGCGCGGGCAGCAAAAGAACAGGCCAGGCGCCGGGAAGAAGCCGCGAAACAGGGCAAGT
CCTGCCGCTCAAAAGGCGATCCGGCCAAGGCCGTGCCCCGGGACCGGGACCAGAGGAACTTCACCGACCCTGAATCCCGGATTATGAAAAACGCCGACAA
GGCCTTCATTCAGGCTTACAACGCCCAGGCGTGTGTGGACGCCGAGACCGGCATCATCGTGGCCGCGGACCTTTCCAACCAGGCCGCGGATGCTCCCCTG
TTGCCGGCCTCAATTGAACAGGTCGAGGAAAACACCGGGCGCACGCCTAAAGAGGTTTCTGCCGATGCCGGCTACTACAGCGCGGACAACCTCGCATACC
TCGCCGCCAGAGGGATCGAGGCCTACATCCCGCCGGGCAAGATCAAACACAACGAATGGCGGGAGTTAAAACCACCCCGGGGGCGGATGCCGCAAGACAT
CTCGCTGCGGGACCTGATGTGGCGTAAGCTGCGAACGAAACACGGCCGGGAGCGTTACAAGCTGCGACAGACCTCGGTGGAGCCGGCATTTGGCATCATC
AAAGAGGTATTTGGTCTCCGGCAGTTCCTGCTCCGGGGGTTAGACAAGGTGCGCTTGATATGGCGGTTCACCTGCGGTGTACACAACCTGATGAAGCTCT
TCCGGGCCGGGTTCAGGGTCAAGTTGGCGTGAAAGACGGGTAAGAAGCAGACCGGCTTCCGTCCTGTCCTGGTCACCAGCCTTGTCTTTCTAGCGAGAGC
GCCGGTATGGAGTTTTCAGAGAGCAATTCTAACACAGGCTG
CCCAACCAAACCATCCTTTTCCCGCCGTCCCCGCAGGACTGGTTGCCCGAAGATCACGTGGCCTACGTTATTGACGAGGTGGTGGAGCAACTCGACCTTT
CGGCCATCTACAATGATTACCGTGATTCTCGTGGGCAACCGCCCTACCAGCCGAAGATGATGGTCAAGGTGCTGATCTACGCCGTGATCAAGGGCATCCA
CTCATCGCGCAAGATCGAAACTGCCCTTTACGAGGACGTGGGCTTCCGGTTTCTCGCGGGGAACCAGCAACCCGACCACTGGACCATCGCCGCCTTCCGG
CGGCGGCACCACCGGGCGCTGGGCGACCTTTTTGTGCAAACCGTAAAGCTCGCCCAGAGAGCCGGCCTGGTGAAGCTCGGGCACGTATCCCTCGACGGCA
CGAAGATCAAAGCCTACGCCTCCAAACACAGCGCCATGAGCTACGGACGGATGAAGCAGGAGGAAGAGCGGCTGCGCCGGGAAATAGACGCGATCCTCGA
CCTGATGGAGAAAACCGACCGGGCGGAGGACAAGAAATACGGCCACCGCCGGGGCGATGAGCTCCCCGCCGAGCTAGCCACACGGCAGAAGCGCCTGGAG
GCCATCCGGCGCGCCAGGGAGGAACTCGAGGCCGAGGCCCGCGCGCGGGCAGCAAAAGAACAGGCCAGGCGCCGGGAAGAAGCCGCGAAACAGGGCAAGT
CCTGCCGCTCAAAAGGCGATCCGGCCAAGGCCGTGCCCCGGGACCGGGACCAGAGGAACTTCACCGACCCTGAATCCCGGATTATGAAAAACGCCGACAA
GGCCTTCATTCAGGCTTACAACGCCCAGGCGTGTGTGGACGCCGAGACCGGCATCATCGTGGCCGCGGACCTTTCCAACCAGGCCGCGGATGCTCCCCTG
TTGCCGGCCTCAATTGAACAGGTCGAGGAAAACACCGGGCGCACGCCTAAAGAGGTTTCTGCCGATGCCGGCTACTACAGCGCGGACAACCTCGCATACC
TCGCCGCCAGAGGGATCGAGGCCTACATCCCGCCGGGCAAGATCAAACACAACGAATGGCGGGAGTTAAAACCACCCCGGGGGCGGATGCCGCAAGACAT
CTCGCTGCGGGACCTGATGTGGCGTAAGCTGCGAACGAAACACGGCCGGGAGCGTTACAAGCTGCGACAGACCTCGGTGGAGCCGGCATTTGGCATCATC
AAAGAGGTATTTGGTCTCCGGCAGTTCCTGCTCCGGGGGTTAGACAAGGTGCGCTTGATATGGCGGTTCACCTGCGGTGTACACAACCTGATGAAGCTCT
TCCGGGCCGGGTTCAGGGTCAAGTTGGCGTGAAAGACGGGTAAGAAGCAGACCGGCTTCCGTCCTGTCCTGGTCACCAGCCTTGTCTTTCTAGCGAGAGC
GCCGGTATGGAGTTTTCAGAGAGCAATTCTAACACAGGCTG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1356 bp | 541 aa | 77 | 1432 | + | No |
Chemistry : DDE
ORF sequence :
MKKFKPYQPNQTILFPPSPQDWLPEDHVAYVIDEVVEQLDLSAIYNDYRDSRGQPPYQPKMMVKVLIYAVIKGIHSSRKIETALYEDVGFRFLAGNQQPD
HWTIAAFRRRHHRALGDLFVQTVKLAQRAGLVKLGHVSLDGTKIKAYASKHSAMSYGRMKQEEERLRREIDAILDLMEKTDRAEDKKYGHRRGDELPAEL
ATRQKRLEAIRRAREELEAEARARAAKEQARRREEAAKQGKSCRSKGDPAKAVPRDRDQRNFTDPESRIMKNADKAFIQAYNAQACVDAETGIIVAADLS
NQAADAPLLPASIEQVEENTGRTPKEVSADAGYYSADNLAYLAARGIEAYIPPGKIKHNEWRELKPPRGRMPQDISLRDLMWRKLRTKHGRERYKLRQTS
VEPAFGIIKEVFGLRQFLLRGLDKVRLIWRFTCGVHNLMKLFRAGFRVKLA
HWTIAAFRRRHHRALGDLFVQTVKLAQRAGLVKLGHVSLDGTKIKAYASKHSAMSYGRMKQEEERLRREIDAILDLMEKTDRAEDKKYGHRRGDELPAEL
ATRQKRLEAIRRAREELEAEARARAAKEQARRREEAAKQGKSCRSKGDPAKAVPRDRDQRNFTDPESRIMKNADKAFIQAYNAQACVDAETGIIVAADLS
NQAADAPLLPASIEQVEENTGRTPKEVSADAGYYSADNLAYLAARGIEAYIPPGKIKHNEWRELKPPRGRMPQDISLRDLMWRKLRTKHGRERYKLRQTS
VEPAFGIIKEVFGLRQFLLRGLDKVRLIWRFTCGVHNLMKLFRAGFRVKLA
Blast result :
Comments
ISThba1 is 76% aa similar to ISTsu2.
References
1] ISfinder annotation (2016)
2] Hu,P., Tom,L., Singh,A., Thomas,B.C., Baker,B.J., Piceno,Y.M., Andersen,G.L. and Banfield,J.F. (2016) MBio 7 (1)
2] Hu,P., Tom,L., Singh,A., Thomas,B.C., Baker,B.J., Piceno,Y.M., Andersen,G.L. and Banfield,J.F. (2016) MBio 7 (1)