ISThba1

  • Family IS1182
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
LGFL01000056 ND Thermoanaerobacterales bacterium
Thermoanaerobacterales bacterium 50_218
DNA section
IS Length : 1541 bp

Ends


IR Length : 18/21

IRL : CAGCCTGTGTGAGATTTTCTCAAAAAATTTTCCTTGCCAGGCATGATTTT
IRR : CAGCCTGTGTTAGAATTGCTCTCTGAAAACTCCATACCGGCGCTCTCGCT

Insertion site


Left flankDirect repeatRight flankDR Length
CGGAGTAACGCTAGGCGATTCGGGG4

DNA sequence

CAGCCTGTGTGAGATTTTCTCAAAAAATTTTCCTTGCCAGGCATGATTTTGGCCTTCGACGTCGAATAAGTAAGTTATGAAGAAATTCAAACCTTATCAA
CCCAACCAAACCATCCTTTTCCCGCCGTCCCCGCAGGACTGGTTGCCCGAAGATCACGTGGCCTACGTTATTGACGAGGTGGTGGAGCAACTCGACCTTT
CGGCCATCTACAATGATTACCGTGATTCTCGTGGGCAACCGCCCTACCAGCCGAAGATGATGGTCAAGGTGCTGATCTACGCCGTGATCAAGGGCATCCA
CTCATCGCGCAAGATCGAAACTGCCCTTTACGAGGACGTGGGCTTCCGGTTTCTCGCGGGGAACCAGCAACCCGACCACTGGACCATCGCCGCCTTCCGG
CGGCGGCACCACCGGGCGCTGGGCGACCTTTTTGTGCAAACCGTAAAGCTCGCCCAGAGAGCCGGCCTGGTGAAGCTCGGGCACGTATCCCTCGACGGCA
CGAAGATCAAAGCCTACGCCTCCAAACACAGCGCCATGAGCTACGGACGGATGAAGCAGGAGGAAGAGCGGCTGCGCCGGGAAATAGACGCGATCCTCGA
CCTGATGGAGAAAACCGACCGGGCGGAGGACAAGAAATACGGCCACCGCCGGGGCGATGAGCTCCCCGCCGAGCTAGCCACACGGCAGAAGCGCCTGGAG
GCCATCCGGCGCGCCAGGGAGGAACTCGAGGCCGAGGCCCGCGCGCGGGCAGCAAAAGAACAGGCCAGGCGCCGGGAAGAAGCCGCGAAACAGGGCAAGT
CCTGCCGCTCAAAAGGCGATCCGGCCAAGGCCGTGCCCCGGGACCGGGACCAGAGGAACTTCACCGACCCTGAATCCCGGATTATGAAAAACGCCGACAA
GGCCTTCATTCAGGCTTACAACGCCCAGGCGTGTGTGGACGCCGAGACCGGCATCATCGTGGCCGCGGACCTTTCCAACCAGGCCGCGGATGCTCCCCTG
TTGCCGGCCTCAATTGAACAGGTCGAGGAAAACACCGGGCGCACGCCTAAAGAGGTTTCTGCCGATGCCGGCTACTACAGCGCGGACAACCTCGCATACC
TCGCCGCCAGAGGGATCGAGGCCTACATCCCGCCGGGCAAGATCAAACACAACGAATGGCGGGAGTTAAAACCACCCCGGGGGCGGATGCCGCAAGACAT
CTCGCTGCGGGACCTGATGTGGCGTAAGCTGCGAACGAAACACGGCCGGGAGCGTTACAAGCTGCGACAGACCTCGGTGGAGCCGGCATTTGGCATCATC
AAAGAGGTATTTGGTCTCCGGCAGTTCCTGCTCCGGGGGTTAGACAAGGTGCGCTTGATATGGCGGTTCACCTGCGGTGTACACAACCTGATGAAGCTCT
TCCGGGCCGGGTTCAGGGTCAAGTTGGCGTGAAAGACGGGTAAGAAGCAGACCGGCTTCCGTCCTGTCCTGGTCACCAGCCTTGTCTTTCTAGCGAGAGC
GCCGGTATGGAGTTTTCAGAGAGCAATTCTAACACAGGCTG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1356 bp541 aa771432+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MKKFKPYQPNQTILFPPSPQDWLPEDHVAYVIDEVVEQLDLSAIYNDYRDSRGQPPYQPKMMVKVLIYAVIKGIHSSRKIETALYEDVGFRFLAGNQQPD
HWTIAAFRRRHHRALGDLFVQTVKLAQRAGLVKLGHVSLDGTKIKAYASKHSAMSYGRMKQEEERLRREIDAILDLMEKTDRAEDKKYGHRRGDELPAEL
ATRQKRLEAIRRAREELEAEARARAAKEQARRREEAAKQGKSCRSKGDPAKAVPRDRDQRNFTDPESRIMKNADKAFIQAYNAQACVDAETGIIVAADLS
NQAADAPLLPASIEQVEENTGRTPKEVSADAGYYSADNLAYLAARGIEAYIPPGKIKHNEWRELKPPRGRMPQDISLRDLMWRKLRTKHGRERYKLRQTS
VEPAFGIIKEVFGLRQFLLRGLDKVRLIWRFTCGVHNLMKLFRAGFRVKLA

 

Blast result :
Comments
ISThba1 is 76% aa similar to ISTsu2.
References
1] ISfinder annotation (2016)
2] Hu,P., Tom,L., Singh,A., Thomas,B.C., Baker,B.J., Piceno,Y.M., Andersen,G.L. and Banfield,J.F. (2016) MBio 7 (1)