ISTsu2
- Family IS1182
- Group
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| AENY02000002 | ND | Thermaerobacter subterraneus | Thermaerobacter subterraneus DSM 13965 |
DNA section
IS Length : 1570 bp
Ends
IR Length : 14/16
IRL : CAGCCCGTGTGAATAACGCTGCATAAGCCAGGCGATCGGGAAGTATTTTT
IRR : CAGCCCGTGTTAGTAATCGCCGTTGATGTCGGGTTCCCCCGCGGCCGTTG
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| GCGGCAGGCCGCGGTAGG | CTAG | GCCACCAGGGCACC | 4 |
DNA sequence
CAGCCCGTGTGAATAACGCTGCATAAGCCAGGCGATCGGGAAGTATTTTTCGGCCGAGATGTCGAAGCAAGAGACATTATGACCAGGAAGAAGTTTCGCG
ACTACCAACCCCATCAGCTCATGATTTTGCCTCCTGCGCTGGACGAGTGGCTGCCGGAGGACCATCCGGTCCACTTCATCAGCCAGGTGGTGGACCAGCT
GGATCTGTCAGCGATCTACAGCGACTACACCGAGCGCCGGGGCCAGCCCCCGTACGAACCGCGCATGATGGTCAAGGTGTGGCTGTACGCGTACATGCGG
GGGATCCGCTCGTCGCGGCGCCTGGAGCGAGCCCTGTACGAAGACGTGGACTTCCGGGTGCTTTCCGCGAACCAGCAGCCCGACCACTGGACGCTCTCGA
ACTTTCGGCGCCGACATCATCAGGCCCTGGCCCGGCTGTTTGTCCAGTCGGTTCGCCTGGCCCAGGAGGCGGGGCTGGTGAAGCTCCGGCACGTGGCGGT
GGACGGGACCAAGCTCAAGGCCTACGCCTCCAAGCACAGCGCCATGAGCTACGGCCGGATGAAGGAGGAGGAACGGCGCCTGACGGAGGAGATCCGGCGC
TACTTGGAAGAGGTTGAGGCCAACGACCGGGCGGAGGATGACGAACACGGCTCCGACAGTGGCTGGCGGCTGCCGCCCGAGCTGGCCACGGCGGATAAGC
GGCTCCAGGCGATTCGGGAGGCGAAGGCCCGGCTGGAGCAGCGGGCCCGGGCCGAGGCCGAAGCCAAGGAAGTGGCGCGGGAAGCGGAGGCGGCGAAGAA
GGGGCGTCGCGCCCGCCGCAAGGAGGCCGCCGCCGAACCGCGCCCGGCCGACAAGGATCAGATCAACTTCACCGACCCCGAGTCGCGGATCCTGCGCAGC
GCCGACAAGGCCTTCATCCAGGGGTACAACGCCCAGTTGGCCGTGGACGCCGAGCCGCACGTCATCGTGGCGGCTGACCTGACGAACCGGGCCGCCGACG
CGCCCCACTTGGTGCCTCAGTTGGAGCAAGTCGAGGCGAACACGGGGCGCTGCCCCAGGGAACTTTCCGCCGACGCCGGTTATTACAGTGAAGCCAACCT
CCAGGCCCTGGAAGAACGGGGTGTAGAAGCCTTCATCCCGCCGGATAAGATCCGTCATACGGAATGGCGCCAGCTCCAGCCGCCCCGAGGGCGGATGCCC
AAGCAGATGAGCACCAAAGACCGGATGCGGCGCAAACTGCGCACGGTCCGAGGGCGCAAACGTTACAAACTGCGTCAGTGTTCCGTTGAGCCCGTCATCG
GGCACATCAAAGAGGCGATGGGGCTTCGGCAGTTCTTGCTCCGTGGGCTCTCGAAGGCTCGCTTCGAGTGGCTCTTCACATGCGCAGCCTTCAACCTACT
GAAGCTTTGGCGCCACTGGAAGCAAGCGATGGGCCGCCGAGGGGAGGCCATGGCGACCTGCTGAAGCGAGGGAGGTTTCTCCCCGCCGACATAAGGCCCA
CACTTCGTCTTATCAAGGAGCAACGGCCGCGGGGGAACCCGACATCAACGGCGATTACTAACACGGGCTG
ACTACCAACCCCATCAGCTCATGATTTTGCCTCCTGCGCTGGACGAGTGGCTGCCGGAGGACCATCCGGTCCACTTCATCAGCCAGGTGGTGGACCAGCT
GGATCTGTCAGCGATCTACAGCGACTACACCGAGCGCCGGGGCCAGCCCCCGTACGAACCGCGCATGATGGTCAAGGTGTGGCTGTACGCGTACATGCGG
GGGATCCGCTCGTCGCGGCGCCTGGAGCGAGCCCTGTACGAAGACGTGGACTTCCGGGTGCTTTCCGCGAACCAGCAGCCCGACCACTGGACGCTCTCGA
ACTTTCGGCGCCGACATCATCAGGCCCTGGCCCGGCTGTTTGTCCAGTCGGTTCGCCTGGCCCAGGAGGCGGGGCTGGTGAAGCTCCGGCACGTGGCGGT
GGACGGGACCAAGCTCAAGGCCTACGCCTCCAAGCACAGCGCCATGAGCTACGGCCGGATGAAGGAGGAGGAACGGCGCCTGACGGAGGAGATCCGGCGC
TACTTGGAAGAGGTTGAGGCCAACGACCGGGCGGAGGATGACGAACACGGCTCCGACAGTGGCTGGCGGCTGCCGCCCGAGCTGGCCACGGCGGATAAGC
GGCTCCAGGCGATTCGGGAGGCGAAGGCCCGGCTGGAGCAGCGGGCCCGGGCCGAGGCCGAAGCCAAGGAAGTGGCGCGGGAAGCGGAGGCGGCGAAGAA
GGGGCGTCGCGCCCGCCGCAAGGAGGCCGCCGCCGAACCGCGCCCGGCCGACAAGGATCAGATCAACTTCACCGACCCCGAGTCGCGGATCCTGCGCAGC
GCCGACAAGGCCTTCATCCAGGGGTACAACGCCCAGTTGGCCGTGGACGCCGAGCCGCACGTCATCGTGGCGGCTGACCTGACGAACCGGGCCGCCGACG
CGCCCCACTTGGTGCCTCAGTTGGAGCAAGTCGAGGCGAACACGGGGCGCTGCCCCAGGGAACTTTCCGCCGACGCCGGTTATTACAGTGAAGCCAACCT
CCAGGCCCTGGAAGAACGGGGTGTAGAAGCCTTCATCCCGCCGGATAAGATCCGTCATACGGAATGGCGCCAGCTCCAGCCGCCCCGAGGGCGGATGCCC
AAGCAGATGAGCACCAAAGACCGGATGCGGCGCAAACTGCGCACGGTCCGAGGGCGCAAACGTTACAAACTGCGTCAGTGTTCCGTTGAGCCCGTCATCG
GGCACATCAAAGAGGCGATGGGGCTTCGGCAGTTCTTGCTCCGTGGGCTCTCGAAGGCTCGCTTCGAGTGGCTCTTCACATGCGCAGCCTTCAACCTACT
GAAGCTTTGGCGCCACTGGAAGCAAGCGATGGGCCGCCGAGGGGAGGCCATGGCGACCTGCTGAAGCGAGGGAGGTTTCTCCCCGCCGACATAAGGCCCA
CACTTCGTCTTATCAAGGAGCAACGGCCGCGGGGGAACCCGACATCAACGGCGATTACTAACACGGGCTG
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 1386 bp | 461 aa | 79 | 1464 | + | No |
Chemistry : DDE
ORF sequence :
MTRKKFRDYQPHQLMILPPALDEWLPEDHPVHFISQVVDQLDLSAIYSDYTERRGQPPYEPRMMVKVWLYAYMRGIRSSRRLERALYEDVDFRVLSANQQ
PDHWTLSNFRRRHHQALARLFVQSVRLAQEAGLVKLRHVAVDGTKLKAYASKHSAMSYGRMKEEERRLTEEIRRYLEEVEANDRAEDDEHGSDSGWRLPP
ELATADKRLQAIREAKARLEQRARAEAEAKEVAREAEAAKKGRRARRKEAAAEPRPADKDQINFTDPESRILRSADKAFIQGYNAQLAVDAEPHVIVAAD
LTNRAADAPHLVPQLEQVEANTGRCPRELSADAGYYSEANLQALEERGVEAFIPPDKIRHTEWRQLQPPRGRMPKQMSTKDRMRRKLRTVRGRKRYKLRQ
CSVEPVIGHIKEAMGLRQFLLRGLSKARFEWLFTCAAFNLLKLWRHWKQAMGRRGEAMATC
PDHWTLSNFRRRHHQALARLFVQSVRLAQEAGLVKLRHVAVDGTKLKAYASKHSAMSYGRMKEEERRLTEEIRRYLEEVEANDRAEDDEHGSDSGWRLPP
ELATADKRLQAIREAKARLEQRARAEAEAKEVAREAEAAKKGRRARRKEAAAEPRPADKDQINFTDPESRILRSADKAFIQGYNAQLAVDAEPHVIVAAD
LTNRAADAPHLVPQLEQVEANTGRCPRELSADAGYYSEANLQALEERGVEAFIPPDKIRHTEWRQLQPPRGRMPKQMSTKDRMRRKLRTVRGRKRYKLRQ
CSVEPVIGHIKEAMGLRQFLLRGLSKARFEWLFTCAAFNLLKLWRHWKQAMGRRGEAMATC
Blast result :
Comments
ISTsu2 is 70% aa similar to ISSyth1.
References
1] ISfinder annotation (2016)
2] Eisen,J., Huntemann,M., Wei,C.-L., Han,J., Detter,J.C., Han,C., Tapia,R., Chen,A., Kyrpides,N., Mavromatis,K., Markowitz,V., Szeto,E., Ivanova,N., Mikhailova,N., Ovchinnikova,G., Pagani,I., Pati,A., Goodwin,L., Nordberg,H.P., Cantor,M.N., Hua,S.X., Woyke,T., Eisen,J. and Klenk,H.-P. (2010) Direct submission GenBank.
2] Eisen,J., Huntemann,M., Wei,C.-L., Han,J., Detter,J.C., Han,C., Tapia,R., Chen,A., Kyrpides,N., Mavromatis,K., Markowitz,V., Szeto,E., Ivanova,N., Mikhailova,N., Ovchinnikova,G., Pagani,I., Pati,A., Goodwin,L., Nordberg,H.P., Cantor,M.N., Hua,S.X., Woyke,T., Eisen,J. and Klenk,H.-P. (2010) Direct submission GenBank.