ISCoco1
- Family IS1182
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
CP003389 | ND | Corallococcus coralloides | Corallococcus coralloides DSM 2259 |
DNA section
IS Length : 1352 bp
Ends
IR Length : 13/14
IRL : GGGGGTGAGAAAAATTTAACGCTTCTGATGCGTCCAGGGGATGCATAAGC
IRR : GGGCGTGAGAAAAAATGGGCCTTCAGACTCGTCGAGCCAGCCTTGCGCGA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TGCCGGAGTGC | TGA | GCCCTCCGGCG | 3 |
ACCCGAGATCGCGATCAGCTC | TGA | GCTCTCGACGGCACTCTTCTTTGATT | 3 |
CTGCTCATCTTCAACGAGCCC | TGA | GTGCGCGCAAAGTGAGAGGGG | 3 |
CCTGTCTTTGAGGGAGATCCC | TGA | GGCCTCCCCGAGACACCCGCTTGACT | 3 |
AGGCAAGACGCGGGCAGGGA TGA | TGG GCTTCGTACAGGTGGAGCC | 0 | |
ATGGACGGCCCAGGGGAGAAC | TGA | GCCCTCCACGCGCCTCCTCGCTCAGG | 3 |
DNA sequence
GGGGGTGAGAAAAATTTAACGCTTCTGATGCGTCCAGGGGATGCATAAGCGCTGCTGTGCGAGCATGAGTCGCCATGGCGGGGCGCAGACGGTCGCGAGT
GCGCGTGCTCCGGCCGAAACGGACGCAGGTGCTGGCGGCGCGGACCTACGAGCAGTTGGTTGACCCAGGTCATCCGGTGCGCGCCGTCTGGGCGGCTGTC
GAAGCGCTGGACATGTCGGACTTCGAGCGCGCCATCCGTTCGCGTCCACATCACGCGGGTCGTTCGGCGGTGGACCCTCGGCTGCTGCTGGCGCTGTGGG
TGTATGGGCAGATGGAGGGCCTCTCCAGTGCTCACGCCATTGCGGCCAGGCTGCGTACGGACGTTGCGTATTGGTGGTTGTGCGGCGGCGTCAGCGTGTC
GGCGCATACGCTGTCTTCCTTCATGACGCATTCAGGCCCTGCCTTCCGGGCGTTGCTGGGCAAGCTGCTGGATGACCTGTGCAGCCGCGGCGCCGTACAC
CGGCCACGGCGACTTGCGCAGGACGGCACGCGTGTGCGTGCCTCCGCAGGGGCTGCCTCTTTCCACCGCAAGGCCACCCTGCGGAAGCGGGCAGCGGAGG
CGGCTGCCGCCGGCCCGTGCCGGCAGGGCGCGAGCACCAAGGCACGTGCAGCACGGGAACGCGCTCGGGCCGATTTACAGGCCCGGGCGGCACTCGCGCT
CGCTGCATTGCCGGCAGCAGCACGGCGTAAGAAACGTGCGAAGGGGGTCGCTCATGGCGAACCCCGAGCCTCTCTCACCGACCCACAGGCCCAGGTGATG
CGCATGCCAGACGGCGGCTTCCGTCCCGCCTACAACGCGCAGGCGGTCTCGGACGTCGAGAGCAGGTTGGCATTGGCCGGTCGTGTCACCGATGAAGGGG
CGGACTCAGCACAGCTGCTCCCGATGGTGCACTGGGTCGCCCGCGTCCTGGGACTCAAGCCCGAAGCCTGGTTGGTGGACGGGGCCTATCGGAATCTCAA
GGTCTTCTCCGCGCTCGAGTCACAGGGCATTCGTGTCTTTTCTCCCTTACCGGCGCGCAAGAACCTGCTTCCACAGGAGGAGCGGAGCGGGGGCCGACGA
GGCGACCCTATCAATGCGTGGCGTGCGCGGATGCAGACACCCGCAGGCAAGCGCACCTACGCCCAGCGCGCACCGACGGCGGAGTTGCTCAACGCGCAGG
TCAAGGAGCGACAAGGACTGCGCAGGCTTCACGTACGAGGTCGCAAGCGAGCCGAAGCTGCGTGGTTGCTCTCACTCGTCGCCCACAACCTCCTGCTCGC
CATCGCGCAAGGCTGGCTCGACGAGTCTGAAGGCCCATTTTTTCTCACGCCC
GCGCGTGCTCCGGCCGAAACGGACGCAGGTGCTGGCGGCGCGGACCTACGAGCAGTTGGTTGACCCAGGTCATCCGGTGCGCGCCGTCTGGGCGGCTGTC
GAAGCGCTGGACATGTCGGACTTCGAGCGCGCCATCCGTTCGCGTCCACATCACGCGGGTCGTTCGGCGGTGGACCCTCGGCTGCTGCTGGCGCTGTGGG
TGTATGGGCAGATGGAGGGCCTCTCCAGTGCTCACGCCATTGCGGCCAGGCTGCGTACGGACGTTGCGTATTGGTGGTTGTGCGGCGGCGTCAGCGTGTC
GGCGCATACGCTGTCTTCCTTCATGACGCATTCAGGCCCTGCCTTCCGGGCGTTGCTGGGCAAGCTGCTGGATGACCTGTGCAGCCGCGGCGCCGTACAC
CGGCCACGGCGACTTGCGCAGGACGGCACGCGTGTGCGTGCCTCCGCAGGGGCTGCCTCTTTCCACCGCAAGGCCACCCTGCGGAAGCGGGCAGCGGAGG
CGGCTGCCGCCGGCCCGTGCCGGCAGGGCGCGAGCACCAAGGCACGTGCAGCACGGGAACGCGCTCGGGCCGATTTACAGGCCCGGGCGGCACTCGCGCT
CGCTGCATTGCCGGCAGCAGCACGGCGTAAGAAACGTGCGAAGGGGGTCGCTCATGGCGAACCCCGAGCCTCTCTCACCGACCCACAGGCCCAGGTGATG
CGCATGCCAGACGGCGGCTTCCGTCCCGCCTACAACGCGCAGGCGGTCTCGGACGTCGAGAGCAGGTTGGCATTGGCCGGTCGTGTCACCGATGAAGGGG
CGGACTCAGCACAGCTGCTCCCGATGGTGCACTGGGTCGCCCGCGTCCTGGGACTCAAGCCCGAAGCCTGGTTGGTGGACGGGGCCTATCGGAATCTCAA
GGTCTTCTCCGCGCTCGAGTCACAGGGCATTCGTGTCTTTTCTCCCTTACCGGCGCGCAAGAACCTGCTTCCACAGGAGGAGCGGAGCGGGGGCCGACGA
GGCGACCCTATCAATGCGTGGCGTGCGCGGATGCAGACACCCGCAGGCAAGCGCACCTACGCCCAGCGCGCACCGACGGCGGAGTTGCTCAACGCGCAGG
TCAAGGAGCGACAAGGACTGCGCAGGCTTCACGTACGAGGTCGCAAGCGAGCCGAAGCTGCGTGGTTGCTCTCACTCGTCGCCCACAACCTCCTGCTCGC
CATCGCGCAAGGCTGGCTCGACGAGTCTGAAGGCCCATTTTTTCTCACGCCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1278 bp | 426 aa | 75 | 1352 | + | No |
Chemistry : DDE
ORF sequence :
MAGRRRSRVRVLRPKRTQVLAARTYEQLVDPGHPVRAVWAAVEALDMSDFERAIRSRPHHAGRSAVDPRLLLALWVYGQMEGLSSAHAIAARLRTDVAYW
WLCGGVSVSAHTLSSFMTHSGPAFRALLGKLLDDLCSRGAVHRPRRLAQDGTRVRASAGAASFHRKATLRKRAAEAAAAGPCRQGASTKARAARERARAD
LQARAALALAALPAAARRKKRAKGVAHGEPRASLTDPQAQVMRMPDGGFRPAYNAQAVSDVESRLALAGRVTDEGADSAQLLPMVHWVARVLGLKPEAWL
VDGAYRNLKVFSALESQGIRVFSPLPARKNLLPQEERSGGRRGDPINAWRARMQTPAGKRTYAQRAPTAELLNAQVKERQGLRRLHVRGRKRAEAAWLLS
LVAHNLLLAIAQGWLDESEGPFFLTP
WLCGGVSVSAHTLSSFMTHSGPAFRALLGKLLDDLCSRGAVHRPRRLAQDGTRVRASAGAASFHRKATLRKRAAEAAAAGPCRQGASTKARAARERARAD
LQARAALALAALPAAARRKKRAKGVAHGEPRASLTDPQAQVMRMPDGGFRPAYNAQAVSDVESRLALAGRVTDEGADSAQLLPMVHWVARVLGLKPEAWL
VDGAYRNLKVFSALESQGIRVFSPLPARKNLLPQEERSGGRRGDPINAWRARMQTPAGKRTYAQRAPTAELLNAQVKERQGLRRLHVRGRKRAEAAWLLS
LVAHNLLLAIAQGWLDESEGPFFLTP
Blast result :Comments : The STOP codon is done by the insertion site.
Comments
ISCoco1 is 53% aa similar to ISAcc1.
References
1] ISfinder annotation (2016)
2] Huntley,S., Zhang,Y., Treuner-Lange,A., Kneip,S., Sensen,C.W. and Sogaard-Andersen,L. (2012) J. Bacteriol. 194 (11), 3012-3013.
2] Huntley,S., Zhang,Y., Treuner-Lange,A., Kneip,S., Sensen,C.W. and Sogaard-Andersen,L. (2012) J. Bacteriol. 194 (11), 3012-3013.