ISCoco1

  • Family IS1182
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
CP003389 ND Corallococcus coralloides
Corallococcus coralloides DSM 2259
DNA section
IS Length : 1352 bp

Ends


IR Length : 13/14

IRL : GGGGGTGAGAAAAATTTAACGCTTCTGATGCGTCCAGGGGATGCATAAGC
IRR : GGGCGTGAGAAAAAATGGGCCTTCAGACTCGTCGAGCCAGCCTTGCGCGA

Insertion site


Left flankDirect repeatRight flankDR Length
TGCCGGAGTGCTGAGCCCTCCGGCG3
ACCCGAGATCGCGATCAGCTCTGAGCTCTCGACGGCACTCTTCTTTGATT3
CTGCTCATCTTCAACGAGCCCTGAGTGCGCGCAAAGTGAGAGGGG3
CCTGTCTTTGAGGGAGATCCCTGAGGCCTCCCCGAGACACCCGCTTGACT3
AGGCAAGACGCGGGCAGGGA TGATGG GCTTCGTACAGGTGGAGCC0
ATGGACGGCCCAGGGGAGAACTGAGCCCTCCACGCGCCTCCTCGCTCAGG3

DNA sequence

GGGGGTGAGAAAAATTTAACGCTTCTGATGCGTCCAGGGGATGCATAAGCGCTGCTGTGCGAGCATGAGTCGCCATGGCGGGGCGCAGACGGTCGCGAGT
GCGCGTGCTCCGGCCGAAACGGACGCAGGTGCTGGCGGCGCGGACCTACGAGCAGTTGGTTGACCCAGGTCATCCGGTGCGCGCCGTCTGGGCGGCTGTC
GAAGCGCTGGACATGTCGGACTTCGAGCGCGCCATCCGTTCGCGTCCACATCACGCGGGTCGTTCGGCGGTGGACCCTCGGCTGCTGCTGGCGCTGTGGG
TGTATGGGCAGATGGAGGGCCTCTCCAGTGCTCACGCCATTGCGGCCAGGCTGCGTACGGACGTTGCGTATTGGTGGTTGTGCGGCGGCGTCAGCGTGTC
GGCGCATACGCTGTCTTCCTTCATGACGCATTCAGGCCCTGCCTTCCGGGCGTTGCTGGGCAAGCTGCTGGATGACCTGTGCAGCCGCGGCGCCGTACAC
CGGCCACGGCGACTTGCGCAGGACGGCACGCGTGTGCGTGCCTCCGCAGGGGCTGCCTCTTTCCACCGCAAGGCCACCCTGCGGAAGCGGGCAGCGGAGG
CGGCTGCCGCCGGCCCGTGCCGGCAGGGCGCGAGCACCAAGGCACGTGCAGCACGGGAACGCGCTCGGGCCGATTTACAGGCCCGGGCGGCACTCGCGCT
CGCTGCATTGCCGGCAGCAGCACGGCGTAAGAAACGTGCGAAGGGGGTCGCTCATGGCGAACCCCGAGCCTCTCTCACCGACCCACAGGCCCAGGTGATG
CGCATGCCAGACGGCGGCTTCCGTCCCGCCTACAACGCGCAGGCGGTCTCGGACGTCGAGAGCAGGTTGGCATTGGCCGGTCGTGTCACCGATGAAGGGG
CGGACTCAGCACAGCTGCTCCCGATGGTGCACTGGGTCGCCCGCGTCCTGGGACTCAAGCCCGAAGCCTGGTTGGTGGACGGGGCCTATCGGAATCTCAA
GGTCTTCTCCGCGCTCGAGTCACAGGGCATTCGTGTCTTTTCTCCCTTACCGGCGCGCAAGAACCTGCTTCCACAGGAGGAGCGGAGCGGGGGCCGACGA
GGCGACCCTATCAATGCGTGGCGTGCGCGGATGCAGACACCCGCAGGCAAGCGCACCTACGCCCAGCGCGCACCGACGGCGGAGTTGCTCAACGCGCAGG
TCAAGGAGCGACAAGGACTGCGCAGGCTTCACGTACGAGGTCGCAAGCGAGCCGAAGCTGCGTGGTTGCTCTCACTCGTCGCCCACAACCTCCTGCTCGC
CATCGCGCAAGGCTGGCTCGACGAGTCTGAAGGCCCATTTTTTCTCACGCCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1278 bp426 aa751352+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MAGRRRSRVRVLRPKRTQVLAARTYEQLVDPGHPVRAVWAAVEALDMSDFERAIRSRPHHAGRSAVDPRLLLALWVYGQMEGLSSAHAIAARLRTDVAYW
WLCGGVSVSAHTLSSFMTHSGPAFRALLGKLLDDLCSRGAVHRPRRLAQDGTRVRASAGAASFHRKATLRKRAAEAAAAGPCRQGASTKARAARERARAD
LQARAALALAALPAAARRKKRAKGVAHGEPRASLTDPQAQVMRMPDGGFRPAYNAQAVSDVESRLALAGRVTDEGADSAQLLPMVHWVARVLGLKPEAWL
VDGAYRNLKVFSALESQGIRVFSPLPARKNLLPQEERSGGRRGDPINAWRARMQTPAGKRTYAQRAPTAELLNAQVKERQGLRRLHVRGRKRAEAAWLLS
LVAHNLLLAIAQGWLDESEGPFFLTP

 

Blast result :Comments : The STOP codon is done by the insertion site.
Comments
ISCoco1 is 53% aa similar to ISAcc1.
References
1] ISfinder annotation (2016)
2] Huntley,S., Zhang,Y., Treuner-Lange,A., Kneip,S., Sensen,C.W. and Sogaard-Andersen,L. (2012) J. Bacteriol. 194 (11), 3012-3013.