ISMmo1

  • Family IS1182
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
LWQU01000137 ND Magnetospirillum moscoviense
Magnetospirillum moscoviense BB-1
DNA section
IS Length : 1515 bp

Ends


IR Length : 15

IRL : GAGCCTGTGAAGGAAATGGCATTGGCGATCCACCTGTGATTCCCTATGGG
IRR : GAGCCTGTGAAGGAATCTGAGTTTTGGTATCTTTCGCTTGTCCTCTCGGC

Insertion site


Left flankDirect repeatRight flankDR Length
CAACACCCATCATGCCCGCGAAGGCGGGCATCCACGAGTCG4

DNA sequence

GAGCCTGTGAAGGAAATGGCATTGGCGATCCACCTGTGATTCCCTATGGGGAACAGGAGGTTTCCGATGTCGCAGGTTCGGTATCGTCAAGTTGATCGCT
CTCAGCTTCGCTGGGACATGGTTGATCTGGACAGCCAGATTCCCGGAGATCATCGGGCGCGGGTGGTTTGGGCGTTCGTTGATGCGCTGGATCTGACCGA
TCTGTATGCATCGATTCGGGCGCAGGAGTTTGGCCCCGGTCGCCCGCCGGCCGATCCGCGCATTCTTTTGGCGGTGTGGCTGTATGCGACGCTGGAAGGG
GTTGGGTCTGCCCGGCAGGTGGCGAAGGCCTGTGTCAGCGACGCAGCCTATCGCTGGCTGTGCGGCGGGGTTTCGATGAATTACCACGGTCTGAGCGACT
TCCGCGTTGGCCATGGCGACATTCTGGACCGGCTGCTGACGGAAACGGTGACGGGCTTGGTGGCGGAAGGGCTTGTCAATCTGGATGAAGTCGCCATCGA
CGGCACCAAGGTGAAAGCCAGTGCGGGGCGGGGCAAATTCCGGCGGGCGGCGACGCTGGAGCGGATCGAGGCCTCGGCGCGCGACCGGGTGGCCGCGTTG
AAAGCCGAAGTGGACAGCGATCCGGAGGCATCCTCCCGCCGCCGTCAGGCGGCCCAGCGGCGCGCGGCGGAAGACGTGGCTCGTCGGGCCGAGGCCGCCC
GTCGGGTCGTGGAGAAACTGCGCGCGGAAAAGACTGAACGGGCCAAACGGCACAAGAAAGCCGAGGCGGAGAAGGCCGAGGAGCGGGCCAGCCTCACCGA
TCCCGAGGCCCGCGCCATGCGCTTCGCCGATGGGACCACCCGCCTTGGCTACAACGTCCAACTGGCTGCCGCCACCGAGACCGGCGTCATCGTCGCCGTC
GATGTCACCGACCGGCGCAACGATGCCGGTCTGGCGGGACCGATGGTCGATCAAATCGAACGCCGGTTCGCTGCCGCGCCCAAACGGGCACTGGTCGACA
CCACCTACGCCACCCATGATGACATGGTGTCGCTGGCCGAACGGGGAACCGCAATCTATTCGCCGGTCCCCGCCGACAAGCCCGATGCCAAACCCGCCAC
GGTCCAGCGCCGGGCGTCCCAGCGGCGATCCGAACCCGACGCGGTCAAGGCCTGGCGCCAACGCATGGCCCAACCCGAGGCCGAGGACATCTACGGCCGC
AGAAAGCGGATCGAAACCATCAACGGCATTCTCAAAGGCAGAGGCTTTGGAATTCTCCTCGTCCGCTCGATCGCCAAAGTCAAATGCATCGCCTTGTTGC
AGGCCATCGCCCACAATCTGTGGCGCGCCCATGGGCTGCGAGCCGCCACGGCATACCCCACAGTCTGACCCACCGGGGCAGCGTTCCCTCCTGCCCCACG
CCCCGAGCCCCGGGCTCGGGCTGAGCCCGCTTTCAAGCCGGCCGCTACCCGAACCTGTCCGCTTCGCCGAGAGGACAAGCGAAAGATACCAAAACTCAGA
TTCCTTCACAGGCTC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1251 bp416 aa1181368+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MVDLDSQIPGDHRARVVWAFVDALDLTDLYASIRAQEFGPGRPPADPRILLAVWLYATLEGVGSARQVAKACVSDAAYRWLCGGVSMNYHGLSDFRVGHG
DILDRLLTETVTGLVAEGLVNLDEVAIDGTKVKASAGRGKFRRAATLERIEASARDRVAALKAEVDSDPEASSRRRQAAQRRAAEDVARRAEAARRVVEK
LRAEKTERAKRHKKAEAEKAEERASLTDPEARAMRFADGTTRLGYNVQLAAATETGVIVAVDVTDRRNDAGLAGPMVDQIERRFAAAPKRALVDTTYATH
DDMVSLAERGTAIYSPVPADKPDAKPATVQRRASQRRSEPDAVKAWRQRMAQPEAEDIYGRRKRIETINGILKGRGFGILLVRSIAKVKCIALLQAIAHN
LWRAHGLRAATAYPTV

 

Blast result :
Comments
ISMmo1 is 63% aa similar to ISRpa10.
References
1] ISfinder annotation (2016)
2] Koziaeva,V., Dziuba,M.V., Ivanov,T.M., Kuznetsov,B. and Grouzdev,D.S. (2016) Direct submission GenBank.