ISBrsp10
- Family IS1182
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
CM001442 | ND | Bradyrhizobium sp. | Bradyrhizobium sp. WSM471 Bradyrhizobium sp. BF49 |
DNA section
IS Length : 1549 bp
Ends
IR Length : 15/18
IRL : GAGGGTGAGAATCTTTCGTCTAAACGGGCATTTGCCGTAGCCGCTTTGCT
IRR : GAGCTTGAGAATGTTTCGCTCCCGCCGAGAGAGCTTTGCATTGCCTGGAG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
CACTCGATCCTCATCC | TGA | GGAGCCCGCAAAGGCGGGC | 3 |
GAAACGAGACCTCATCC | TGA | GGAGCCCGCCAAAGCGG | 3 |
GAAGAAGGACCTCATCC | TGA | GGAGCTCGCCAAAGGCG | 3 |
TGTCTCGACCCTCATCC | TGA | GGAGCGCGGAACGCGCG | 3 |
GGCACTGTTCCTCATCC | TGA | GGAGCCCGCGAAGCGGG | 3 |
GTAGTTGAGCCTCATCC | TGA | GGAGGCCGCGAAGCGGT | 3 |
TGTGTAACCCCTCATCC | TGA | GGAGCCCGCTGGAAGCG | 3 |
AGCACTGGCCCTCATCC | TGA | GGAGCCCGCAAAGCGGG | 3 |
ACCGCTTCGCGGTCTCC | TCA | GGATGAGGCTTGGCTAA | 3 |
DNA sequence
GAGGGTGAGAATCTTTCGTCTAAACGGGCATTTGCCGTAGCCGCTTTGCTATGATTCGATGACGGGGCGAAGCAGGGGCAGATGATGGCTGACGATCAAT
TGTTCGAAGACTTGCCCGAGCAGGATAAGCCACTACCCAAGGGACGCGGCGCGGTGCGGTTGCGAGAACCGGAACGCAGCCAGATGAGCATGCAGGTCGC
GGCATTGGACGATCTGGTAGGGGATGATCATCCGGTCCGCGCGGTTTGGTCGTTTGTCGAGGGGCTGGATCTGTCGGCGCTGTACGACGTCATCAAGGCG
CGGGAGGGCGAGCCCGGACATCCGCCGGCCTCGCCGAAGCTGATGCTGGCGCTTTGGCTCTGGGCCACGATCGATGGAGTGGGCAGCGCTCGCCAACTGG
ACCGGCTGTGCCGGGATCATCTGATCTATCGTTGGTTGTGCGGCGGAGTGTCGATGAACTATCACAGCCTGTCGAACTTCCGGATCGCCCATATGGCGGT
TCTGGAACGGCTGCTGACACAGGGCGTCGCGTCGATGGTGGACGCTGGATTGGTGTCGCTCGACACCTTGGCGCAGGATGGTTTGCGGGTGCGCGCGGCG
GCCGGAGCGGGCTCGTTCCGCCGGCGGCCACGGCTTGATGAGTTGAAGACGGCAGCGCAGACGCGGGTGGAGCGCCTGCGCTTTGAAGTCGAGACCGATC
CTGCGGCCGATGATCGGCGTCGGCGTGCGGCAAAGGAGCGTGGCGCCCGCGAGCGTGCGGAGCGGATCGCGGCGGCGCAGGAACGCATGAAGGAGCTGGA
AGCCGAGCGGGAGCGGCGAGAGAAAACCAACAAGAAAGAGGTGGCCAAGCAGAAGTCGCCGCGCGCTTCCACCACCGATGCCGACGCACGGGTGATGAAG
ATGGCCGATGGCGGATGGCGCCCGGCCTACAACACACAGATCGTATCGGCTCCGGAACACCAGGTGATCGTTGCGGTCGATATCGATACCAGCGGCTCGG
ATCGGGGCTTGGCCCAGCCGGGGATCGAGATGGTGCATGCCGAAGGCTACCAACCCTCCAACTATCTGGTCGATGGCGGCTTCACCAAAAACGAAGCCAT
TGAGTGGGCCCATGCCAACGGTATAAAAGTGTGGTGTCCGCCAGCGCAGACAAAACACGGCACCGACCCTTATGCCCCTAAGAAAGGTGACGGTGTTGGC
GTCGCGGACTGGCGTGAACGCATGAAGAGCGACGATGGCAAGGCGTTCTACCGGCTGCGTTGCGAACACGAATGCATCAACGCCCATGCCCGACGCATGG
GCCTGCGCCAGTTATCCCTGCGCGGCAAGATCAAGGCCCGCATCCACCTGTTGTGGTTCGCGGTCGCTCACAACATGATGCGCTTCTTCGCCTTACACGC
CAAGGCGCAAGCGGCATAAATAGGCGAGCCCGCACCAATAGGCGCCAACAAAGCCCCCATCAGCGGGCCGGTTCAGCTGAAAACCTTGGGGTCACTGCTC
TCCAGGCAATGCAAAGCTCTCTCGGCGGGAGCGAAACATTCTCAAGCTC
TGTTCGAAGACTTGCCCGAGCAGGATAAGCCACTACCCAAGGGACGCGGCGCGGTGCGGTTGCGAGAACCGGAACGCAGCCAGATGAGCATGCAGGTCGC
GGCATTGGACGATCTGGTAGGGGATGATCATCCGGTCCGCGCGGTTTGGTCGTTTGTCGAGGGGCTGGATCTGTCGGCGCTGTACGACGTCATCAAGGCG
CGGGAGGGCGAGCCCGGACATCCGCCGGCCTCGCCGAAGCTGATGCTGGCGCTTTGGCTCTGGGCCACGATCGATGGAGTGGGCAGCGCTCGCCAACTGG
ACCGGCTGTGCCGGGATCATCTGATCTATCGTTGGTTGTGCGGCGGAGTGTCGATGAACTATCACAGCCTGTCGAACTTCCGGATCGCCCATATGGCGGT
TCTGGAACGGCTGCTGACACAGGGCGTCGCGTCGATGGTGGACGCTGGATTGGTGTCGCTCGACACCTTGGCGCAGGATGGTTTGCGGGTGCGCGCGGCG
GCCGGAGCGGGCTCGTTCCGCCGGCGGCCACGGCTTGATGAGTTGAAGACGGCAGCGCAGACGCGGGTGGAGCGCCTGCGCTTTGAAGTCGAGACCGATC
CTGCGGCCGATGATCGGCGTCGGCGTGCGGCAAAGGAGCGTGGCGCCCGCGAGCGTGCGGAGCGGATCGCGGCGGCGCAGGAACGCATGAAGGAGCTGGA
AGCCGAGCGGGAGCGGCGAGAGAAAACCAACAAGAAAGAGGTGGCCAAGCAGAAGTCGCCGCGCGCTTCCACCACCGATGCCGACGCACGGGTGATGAAG
ATGGCCGATGGCGGATGGCGCCCGGCCTACAACACACAGATCGTATCGGCTCCGGAACACCAGGTGATCGTTGCGGTCGATATCGATACCAGCGGCTCGG
ATCGGGGCTTGGCCCAGCCGGGGATCGAGATGGTGCATGCCGAAGGCTACCAACCCTCCAACTATCTGGTCGATGGCGGCTTCACCAAAAACGAAGCCAT
TGAGTGGGCCCATGCCAACGGTATAAAAGTGTGGTGTCCGCCAGCGCAGACAAAACACGGCACCGACCCTTATGCCCCTAAGAAAGGTGACGGTGTTGGC
GTCGCGGACTGGCGTGAACGCATGAAGAGCGACGATGGCAAGGCGTTCTACCGGCTGCGTTGCGAACACGAATGCATCAACGCCCATGCCCGACGCATGG
GCCTGCGCCAGTTATCCCTGCGCGGCAAGATCAAGGCCCGCATCCACCTGTTGTGGTTCGCGGTCGCTCACAACATGATGCGCTTCTTCGCCTTACACGC
CAAGGCGCAAGCGGCATAAATAGGCGAGCCCGCACCAATAGGCGCCAACAAAGCCCCCATCAGCGGGCCGGTTCAGCTGAAAACCTTGGGGTCACTGCTC
TCCAGGCAATGCAAAGCTCTCTCGGCGGGAGCGAAACATTCTCAAGCTC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1338 bp | 445 aa | 82 | 1419 | + | No |
Chemistry : DDE
ORF sequence :
MMADDQLFEDLPEQDKPLPKGRGAVRLREPERSQMSMQVAALDDLVGDDHPVRAVWSFVEGLDLSALYDVIKAREGEPGHPPASPKLMLALWLWATIDGV
GSARQLDRLCRDHLIYRWLCGGVSMNYHSLSNFRIAHMAVLERLLTQGVASMVDAGLVSLDTLAQDGLRVRAAAGAGSFRRRPRLDELKTAAQTRVERLR
FEVETDPAADDRRRRAAKERGARERAERIAAAQERMKELEAERERREKTNKKEVAKQKSPRASTTDADARVMKMADGGWRPAYNTQIVSAPEHQVIVAVD
IDTSGSDRGLAQPGIEMVHAEGYQPSNYLVDGGFTKNEAIEWAHANGIKVWCPPAQTKHGTDPYAPKKGDGVGVADWRERMKSDDGKAFYRLRCEHECIN
AHARRMGLRQLSLRGKIKARIHLLWFAVAHNMMRFFALHAKAQAA
GSARQLDRLCRDHLIYRWLCGGVSMNYHSLSNFRIAHMAVLERLLTQGVASMVDAGLVSLDTLAQDGLRVRAAAGAGSFRRRPRLDELKTAAQTRVERLR
FEVETDPAADDRRRRAAKERGARERAERIAAAQERMKELEAERERREKTNKKEVAKQKSPRASTTDADARVMKMADGGWRPAYNTQIVSAPEHQVIVAVD
IDTSGSDRGLAQPGIEMVHAEGYQPSNYLVDGGFTKNEAIEWAHANGIKVWCPPAQTKHGTDPYAPKKGDGVGVADWRERMKSDDGKAFYRLRCEHECIN
AHARRMGLRQLSLRGKIKARIHLLWFAVAHNMMRFFALHAKAQAA
Blast result :
Comments
ISBrsp10 is 69% aa similar to ISRpa10.
References
1] ISfinder annotation (2016)
2] Lucas,S., Han,J., Lapidus,A., Cheng,J.-F., Goodwin,L., Pitluck,S., Peters,L., Lu,M., Detter,J.C., Han,C., Tapia,R., Land,M., Hauser,L., Kyrpides,N., Ivanova,N., Pagani,I., Brau,L., Yates,R., O'Hara,G., Rui,T., Howieson,J., Reeve,W. and Woyke,T. (2011) Direct submission GenBank.
2] Lucas,S., Han,J., Lapidus,A., Cheng,J.-F., Goodwin,L., Pitluck,S., Peters,L., Lu,M., Detter,J.C., Han,C., Tapia,R., Land,M., Hauser,L., Kyrpides,N., Ivanova,N., Pagani,I., Brau,L., Yates,R., O'Hara,G., Rui,T., Howieson,J., Reeve,W. and Woyke,T. (2011) Direct submission GenBank.