ISBrsp10

  • Family IS1182
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
CM001442 ND Bradyrhizobium sp.
Bradyrhizobium sp. WSM471
Bradyrhizobium sp. BF49
DNA section
IS Length : 1549 bp

Ends


IR Length : 15/18

IRL : GAGGGTGAGAATCTTTCGTCTAAACGGGCATTTGCCGTAGCCGCTTTGCT
IRR : GAGCTTGAGAATGTTTCGCTCCCGCCGAGAGAGCTTTGCATTGCCTGGAG

Insertion site


Left flankDirect repeatRight flankDR Length
CACTCGATCCTCATCCTGAGGAGCCCGCAAAGGCGGGC3
GAAACGAGACCTCATCCTGAGGAGCCCGCCAAAGCGG3
GAAGAAGGACCTCATCCTGAGGAGCTCGCCAAAGGCG3
TGTCTCGACCCTCATCCTGAGGAGCGCGGAACGCGCG3
GGCACTGTTCCTCATCCTGAGGAGCCCGCGAAGCGGG3
GTAGTTGAGCCTCATCCTGAGGAGGCCGCGAAGCGGT3
TGTGTAACCCCTCATCCTGAGGAGCCCGCTGGAAGCG3
AGCACTGGCCCTCATCCTGAGGAGCCCGCAAAGCGGG3
ACCGCTTCGCGGTCTCCTCAGGATGAGGCTTGGCTAA3

DNA sequence

GAGGGTGAGAATCTTTCGTCTAAACGGGCATTTGCCGTAGCCGCTTTGCTATGATTCGATGACGGGGCGAAGCAGGGGCAGATGATGGCTGACGATCAAT
TGTTCGAAGACTTGCCCGAGCAGGATAAGCCACTACCCAAGGGACGCGGCGCGGTGCGGTTGCGAGAACCGGAACGCAGCCAGATGAGCATGCAGGTCGC
GGCATTGGACGATCTGGTAGGGGATGATCATCCGGTCCGCGCGGTTTGGTCGTTTGTCGAGGGGCTGGATCTGTCGGCGCTGTACGACGTCATCAAGGCG
CGGGAGGGCGAGCCCGGACATCCGCCGGCCTCGCCGAAGCTGATGCTGGCGCTTTGGCTCTGGGCCACGATCGATGGAGTGGGCAGCGCTCGCCAACTGG
ACCGGCTGTGCCGGGATCATCTGATCTATCGTTGGTTGTGCGGCGGAGTGTCGATGAACTATCACAGCCTGTCGAACTTCCGGATCGCCCATATGGCGGT
TCTGGAACGGCTGCTGACACAGGGCGTCGCGTCGATGGTGGACGCTGGATTGGTGTCGCTCGACACCTTGGCGCAGGATGGTTTGCGGGTGCGCGCGGCG
GCCGGAGCGGGCTCGTTCCGCCGGCGGCCACGGCTTGATGAGTTGAAGACGGCAGCGCAGACGCGGGTGGAGCGCCTGCGCTTTGAAGTCGAGACCGATC
CTGCGGCCGATGATCGGCGTCGGCGTGCGGCAAAGGAGCGTGGCGCCCGCGAGCGTGCGGAGCGGATCGCGGCGGCGCAGGAACGCATGAAGGAGCTGGA
AGCCGAGCGGGAGCGGCGAGAGAAAACCAACAAGAAAGAGGTGGCCAAGCAGAAGTCGCCGCGCGCTTCCACCACCGATGCCGACGCACGGGTGATGAAG
ATGGCCGATGGCGGATGGCGCCCGGCCTACAACACACAGATCGTATCGGCTCCGGAACACCAGGTGATCGTTGCGGTCGATATCGATACCAGCGGCTCGG
ATCGGGGCTTGGCCCAGCCGGGGATCGAGATGGTGCATGCCGAAGGCTACCAACCCTCCAACTATCTGGTCGATGGCGGCTTCACCAAAAACGAAGCCAT
TGAGTGGGCCCATGCCAACGGTATAAAAGTGTGGTGTCCGCCAGCGCAGACAAAACACGGCACCGACCCTTATGCCCCTAAGAAAGGTGACGGTGTTGGC
GTCGCGGACTGGCGTGAACGCATGAAGAGCGACGATGGCAAGGCGTTCTACCGGCTGCGTTGCGAACACGAATGCATCAACGCCCATGCCCGACGCATGG
GCCTGCGCCAGTTATCCCTGCGCGGCAAGATCAAGGCCCGCATCCACCTGTTGTGGTTCGCGGTCGCTCACAACATGATGCGCTTCTTCGCCTTACACGC
CAAGGCGCAAGCGGCATAAATAGGCGAGCCCGCACCAATAGGCGCCAACAAAGCCCCCATCAGCGGGCCGGTTCAGCTGAAAACCTTGGGGTCACTGCTC
TCCAGGCAATGCAAAGCTCTCTCGGCGGGAGCGAAACATTCTCAAGCTC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1338 bp445 aa821419+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MMADDQLFEDLPEQDKPLPKGRGAVRLREPERSQMSMQVAALDDLVGDDHPVRAVWSFVEGLDLSALYDVIKAREGEPGHPPASPKLMLALWLWATIDGV
GSARQLDRLCRDHLIYRWLCGGVSMNYHSLSNFRIAHMAVLERLLTQGVASMVDAGLVSLDTLAQDGLRVRAAAGAGSFRRRPRLDELKTAAQTRVERLR
FEVETDPAADDRRRRAAKERGARERAERIAAAQERMKELEAERERREKTNKKEVAKQKSPRASTTDADARVMKMADGGWRPAYNTQIVSAPEHQVIVAVD
IDTSGSDRGLAQPGIEMVHAEGYQPSNYLVDGGFTKNEAIEWAHANGIKVWCPPAQTKHGTDPYAPKKGDGVGVADWRERMKSDDGKAFYRLRCEHECIN
AHARRMGLRQLSLRGKIKARIHLLWFAVAHNMMRFFALHAKAQAA

 

Blast result :
Comments
ISBrsp10 is 69% aa similar to ISRpa10.
References
1] ISfinder annotation (2016)
2] Lucas,S., Han,J., Lapidus,A., Cheng,J.-F., Goodwin,L., Pitluck,S., Peters,L., Lu,M., Detter,J.C., Han,C., Tapia,R., Land,M., Hauser,L., Kyrpides,N., Ivanova,N., Pagani,I., Brau,L., Yates,R., O'Hara,G., Rui,T., Howieson,J., Reeve,W. and Woyke,T. (2011) Direct submission GenBank.