ISVei6
- Family IS1182
- Group
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| CP000542 | ND | Verminephrobacter eiseniae | Verminephrobacter eiseniae EF01-2 |
DNA section
IS Length : 1688 bp
Ends
IR Length : 15/17
IRL : GAGCTTGAGAGTTTTTCCCCGCTGACCGTTGGGAAGTGGCACGAGACTGG
IRR : GAGTCTGAGAGTTTTTCGATTTTCAGAAGGTGGACGGCTGCCCTACGCCA
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| CATAGCTGAAGAC | TCA | GGCCACCCCGCTC | 3 |
| GAGGCGCCGGCCACTGCCGGC | TCA | GGCCGGGTTGTCGATCTCGAT | 3 |
| CCCGGCTTGAAGTTCCGCGCC | TCA | GTCGAGTTGGCTCATCGCGTC | 3 |
| ACACTGAGTGTGTGTGTGTAC | TCA | GTGGTCACGCCCATTGTGCGA | 3 |
DNA sequence
GAGCTTGAGAGTTTTTCCCCGCTGACCGTTGGGAAGTGGCACGAGACTGGCTTGGGCAAGGTATGACGTCAAGCCAGCGCTCCGCGATGCCCCAGGATCA
GGCCATGTTCGAAGGCATGGATGTGCCAGCAGCGAGTGCTGGCGCGCCAATGCACCCTTGTAGCGCACCGCCAGCCAGTGCCCCGGCACGCGTGCAGGAG
CCCAACCGTTTGCAAGTGGAGCTGCGCGCATCCGACCTGGATTCGCTGCTGCCTGCAGACCATCGGGCCCGACTGGTGTGGCGCTACGTGGAGCAGCAGG
ATCTGAGCGCGCTGTTCGATGCCATCCGGGCCCGAGGTTCGGCGCCTGGGCGCCGGGCCATTGATCCACGCATCCTGTTCTCGCTGTGGCTGTACGCCAC
GCTGGATGGCGTCGGCAGCGGGCGCGAGGTCGCCCGGTTGAGCCAAAGCCACGACGCGTACCGCTGGATCTGTGGTGGTGTGTCGGTGAACTACCACGCG
CTCAATGACTTTCGGGTGGGCAACGAGGCGCTGATGGACCGCCTGCTCAGCCACAACGTGGCCGCGCTGGCTGCCGTCGGGGTGATCCGGCTGGTGCGCG
TGGCGCAAGACGGCATGCGGGTACGCGCCAGCGCCGGGGCGGCCTCGTTCCGGCGCAAGGGCACGCTCAAGGAGCACCATGCCAAGGCCACCGAGATGGT
GCACTCGCTCAAGGAGCAAGCCCGCGAGAACCCGGGGCAGGCCGAGCGACGGGCACAGGCGGCCAGGCTGCGGGCAGCCGAGCTGCGCGAGCAGCAACTG
GCCGCGGCACTGGCGCGGCTGCCCGAGTTGGAGGCAATCAAGCAGCGCAATGGCCAGCCGATCGACAAGGCGCGTGCCAGCACGACAGATGCCGATGCCA
GCAACATGAAGATGGCCGACGGCGGCTGGCGCCCGGCCTACAACGTGCAACTGGCCACCGACTGCGCCAGCCAGGTGATCGTGGGCGTGGACACCGTCAC
CGCCGGCAGCGACATGGCCCAGTTGGCGCCCATGGTCCAACAAGTGCACCAGCGCGTGGGCAAGGCGGCCGAACAATGGCTGGTCGACGGCGGCTTGCCA
GCGCACGGCCAACTGGACGCGGTGGCCGACAAGACCGAGGTCTATGCGCCGGTGCCCCAAGCCAGGGCACCCAAGGGAAAGAGCCAAGGCCAGGACGACG
ACCAGCAGCCGCCCGCACCGGGCAGCCAGTTCCAACCCAAGGCCGGCGACAGCACAGCCGTGGCGCAGTGGCGCCAGCGCATGAGCACCGATGAGGCCCG
CGAGATCTACAAGGATCGGGCGGCCACGGCCGAATGCGTGAACGCGCAGGCGCGCAACCGCGGCCTGCTGCGCATGCCCGTGCGTGGACTGGCCAAGGTC
AAGTGCATTGCCTGGTGGTATGCCCTGGCACACAACCTGATGAGGACGGTGGCGCTGGCGCCGCAGCTCATCGGCTGGGGCACAGGTGCGTGCGCAGGTG
CGGCAGCGCTGACTTGAGGGCCCTGCGCGCCAGGATCAATGCGCCGCAAGGCCATGGTGAGCGACCTGCAACGCTCAAAGCCAACGTACCCGCCGCACTG
TGGCTACCTCACTCGCGCCGCGAACCCGCCGCCATGGCTGGCGTAGGGCAGCCGTCCACCTTCTGAAAATCGAAAAACTCTCAGACTC
GGCCATGTTCGAAGGCATGGATGTGCCAGCAGCGAGTGCTGGCGCGCCAATGCACCCTTGTAGCGCACCGCCAGCCAGTGCCCCGGCACGCGTGCAGGAG
CCCAACCGTTTGCAAGTGGAGCTGCGCGCATCCGACCTGGATTCGCTGCTGCCTGCAGACCATCGGGCCCGACTGGTGTGGCGCTACGTGGAGCAGCAGG
ATCTGAGCGCGCTGTTCGATGCCATCCGGGCCCGAGGTTCGGCGCCTGGGCGCCGGGCCATTGATCCACGCATCCTGTTCTCGCTGTGGCTGTACGCCAC
GCTGGATGGCGTCGGCAGCGGGCGCGAGGTCGCCCGGTTGAGCCAAAGCCACGACGCGTACCGCTGGATCTGTGGTGGTGTGTCGGTGAACTACCACGCG
CTCAATGACTTTCGGGTGGGCAACGAGGCGCTGATGGACCGCCTGCTCAGCCACAACGTGGCCGCGCTGGCTGCCGTCGGGGTGATCCGGCTGGTGCGCG
TGGCGCAAGACGGCATGCGGGTACGCGCCAGCGCCGGGGCGGCCTCGTTCCGGCGCAAGGGCACGCTCAAGGAGCACCATGCCAAGGCCACCGAGATGGT
GCACTCGCTCAAGGAGCAAGCCCGCGAGAACCCGGGGCAGGCCGAGCGACGGGCACAGGCGGCCAGGCTGCGGGCAGCCGAGCTGCGCGAGCAGCAACTG
GCCGCGGCACTGGCGCGGCTGCCCGAGTTGGAGGCAATCAAGCAGCGCAATGGCCAGCCGATCGACAAGGCGCGTGCCAGCACGACAGATGCCGATGCCA
GCAACATGAAGATGGCCGACGGCGGCTGGCGCCCGGCCTACAACGTGCAACTGGCCACCGACTGCGCCAGCCAGGTGATCGTGGGCGTGGACACCGTCAC
CGCCGGCAGCGACATGGCCCAGTTGGCGCCCATGGTCCAACAAGTGCACCAGCGCGTGGGCAAGGCGGCCGAACAATGGCTGGTCGACGGCGGCTTGCCA
GCGCACGGCCAACTGGACGCGGTGGCCGACAAGACCGAGGTCTATGCGCCGGTGCCCCAAGCCAGGGCACCCAAGGGAAAGAGCCAAGGCCAGGACGACG
ACCAGCAGCCGCCCGCACCGGGCAGCCAGTTCCAACCCAAGGCCGGCGACAGCACAGCCGTGGCGCAGTGGCGCCAGCGCATGAGCACCGATGAGGCCCG
CGAGATCTACAAGGATCGGGCGGCCACGGCCGAATGCGTGAACGCGCAGGCGCGCAACCGCGGCCTGCTGCGCATGCCCGTGCGTGGACTGGCCAAGGTC
AAGTGCATTGCCTGGTGGTATGCCCTGGCACACAACCTGATGAGGACGGTGGCGCTGGCGCCGCAGCTCATCGGCTGGGGCACAGGTGCGTGCGCAGGTG
CGGCAGCGCTGACTTGAGGGCCCTGCGCGCCAGGATCAATGCGCCGCAAGGCCATGGTGAGCGACCTGCAACGCTCAAAGCCAACGTACCCGCCGCACTG
TGGCTACCTCACTCGCGCCGCGAACCCGCCGCCATGGCTGGCGTAGGGCAGCCGTCCACCTTCTGAAAATCGAAAAACTCTCAGACTC
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 1413 bp | 470 aa | 105 | 1517 | + | No |
Chemistry : DDE
ORF sequence :
MFEGMDVPAASAGAPMHPCSAPPASAPARVQEPNRLQVELRASDLDSLLPADHRARLVWRYVEQQDLSALFDAIRARGSAPGRRAIDPRILFSLWLYATL
DGVGSGREVARLSQSHDAYRWICGGVSVNYHALNDFRVGNEALMDRLLSHNVAALAAVGVIRLVRVAQDGMRVRASAGAASFRRKGTLKEHHAKATEMVH
SLKEQARENPGQAERRAQAARLRAAELREQQLAAALARLPELEAIKQRNGQPIDKARASTTDADASNMKMADGGWRPAYNVQLATDCASQVIVGVDTVTA
GSDMAQLAPMVQQVHQRVGKAAEQWLVDGGLPAHGQLDAVADKTEVYAPVPQARAPKGKSQGQDDDQQPPAPGSQFQPKAGDSTAVAQWRQRMSTDEARE
IYKDRAATAECVNAQARNRGLLRMPVRGLAKVKCIAWWYALAHNLMRTVALAPQLIGWGTGACAGAAALT
DGVGSGREVARLSQSHDAYRWICGGVSVNYHALNDFRVGNEALMDRLLSHNVAALAAVGVIRLVRVAQDGMRVRASAGAASFRRKGTLKEHHAKATEMVH
SLKEQARENPGQAERRAQAARLRAAELREQQLAAALARLPELEAIKQRNGQPIDKARASTTDADASNMKMADGGWRPAYNVQLATDCASQVIVGVDTVTA
GSDMAQLAPMVQQVHQRVGKAAEQWLVDGGLPAHGQLDAVADKTEVYAPVPQARAPKGKSQGQDDDQQPPAPGSQFQPKAGDSTAVAQWRQRMSTDEARE
IYKDRAATAECVNAQARNRGLLRMPVRGLAKVKCIAWWYALAHNLMRTVALAPQLIGWGTGACAGAAALT
Blast result :
Comments
ISVei6 is 71% aa similar to ISAcc1.
References
1] ISfinder annotation (2016)
2] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Dalin,E., Tice,H., Pitluck,S., Chertkov,O., Brettin,T., Bruce,D., Han,C., Tapia,R., Gilna,P., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Kim,E., Stahl,D. and Richardson,P. (2006) Direct submission GenBank.
2] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Dalin,E., Tice,H., Pitluck,S., Chertkov,O., Brettin,T., Bruce,D., Han,C., Tapia,R., Gilna,P., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Kim,E., Stahl,D. and Richardson,P. (2006) Direct submission GenBank.