ISThph1

  • Family IS1182
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
AMXF01000064 ND Thauera phenylacetica
Thauera phenylacetica B4P
DNA section
IS Length : 1674 bp

Ends


IR Length : 13/17

IRL : GAGCGTGAGAGTTTTTCTCCAATCTCGCCTGTTTGTGCTGGGACTGGCAT
IRR : GAGCCTGAGAAGCATTTGATTTCCGCAAGCCGAGTAACCGACATGCGACG

Insertion site


Left flankDirect repeatRight flankDR Length
GTTCCAGGCCGGGCGGCTGAGCCAGCGTGTGCT3
CGGCTGAg3
GAGAGGATCTCAGGGGCTGAGACCAGCCGCCGA3
CGGGGTGCTCGCAGCGCTGAGACCGGTTTTTGT3
GCGCACGCGACGCCGGCTGAGCCCTCCCCGACC3

DNA sequence

GAGCGTGAGAGTTTTTCTCCAATCTCGCCTGTTTGTGCTGGGACTGGCATGCTCCGAGACATGAACGAGACCGAACGTCATAACGGATCGCCGGCCAGCC
TGTTCGATGAGCTGCCGGCTGTCGAGGAACAACAGGTGATCGCGGCGAAGCAGGCGCGGGCGGCTTCACGCCGGCAAGGCCCGCCGCGGTTGCTGCAGCC
CAACCGCGGGCAGATCGAACTGCGCGCCTCGGACCTGGAGTCGCTGCTGGGTGAGGATCACCGGGCTCGGCTGGTGTGGGGCTACGTCGAGCGGCAGGAC
CTGAGCCGGTTGATCGAATCGATCAAGGCCCGTGGCAGCAACGCCGGACGGTCGGCGATCGACCCGCGGATCCTGTTCGCGCTGTGGCTGTACGCCACGC
TCGATGCGGTGGGCAGCGGCCGGGAGATTGCCCGTCTCACGCGCGAGAGCGACGCCTACCGCTGGATCTGCGGTGGCGTGTCGGTGAATTACCACGCGCT
CAACGACTTTCGCTCAGGCAACGAGAGCTTGATGGACGAAGTGCTCACGGCCAATGTCGCTGCGCTGGCCTCGGCTGGGGCGATCAGCCTGGAGCGCGTG
GCGCAGGACGGCATGCGCGTGCGTGCCGATGCGGGCGCAGCGTCGTTTCGGCGGCAGGCCAGCCTCGAGCAGCACTTGGCCGAGGCCGGCGAGTTGGTCG
ATGACATCAAGAAACGCGCCGCGGCCGATCCGGCAGCGGCCAGCCGCCGGGCGCAGGCTGCGCGCGAGCGTGCCGCGCAGCAGCGCGAGGAGTGCATCCG
CGCCGCGCTGGAGCAACTGCCGCAGGTGCAGGCGGCCAAGCGGCGCAACGGTGAAAAGCCCGAGCAGGCACGAGCCAGCACCACGGATGCCGACGCGCGG
GTGATGAAGATGGGCGACGGCGGCTACCGGCCAGCGTTCAACGTACAACTGGCCACAACGTGCGAGGACCAGGTCATCGTCGGGGTGGAGGTGAGCAACA
CCGGCAGCGACATGGCGCAGATGGCGCCGATGCTCGAGCAGGTCATCGAGCGCACGGGCACCGTACCCGGGCAATGGCTGGTCGATGGGGGCTTTCCCGC
GCACGAGCAGATTGAGGCGGTGCATGCGCACACGAAAGGCCAGACCGAGGTCATCGCCCCGGTGCCCGAGCCCAGGCGCAAGGCAGACAAGCGCGACGAC
GACGCCCGCCCGCCGCCGGACAAGTACCGGCGCAAGGAAGGGGACTCCGAGCCGGTGGCGCAGTGGCGTGCGCGCATGGCCGGCGACGAGATCAAGGATG
TGTACAAGCAACGCGCGGCCACGGCCGAGTGCGTCAACGCACTGGCGCGCAACCGCGGACTGCAGCGCATGCCTGTGCGCGGGCTGGGCAAGGTTCGAGC
GGTGGCCTACCTGTACGCGCTGGCGCACAACTTGATGCGCATGGCCAAGATCGCGCCGCAGATGCTCGGTCGAGGTAGCGGTGCGTCCAAAATCGCCGCA
GCGCTGGCATAAGAGGTGCCTGAAATGAAAACCCGCCGCCTGAAAACCCCGGATCTGCCCTCACAGACGCTTGGCTGGGCCTCGAACACCCCACAGCACC
TGCGCATCGCAGGCCACTGGGTCTCGTCGCATGTCGGTTACTCGGCTTGCGGAAATCAAATGCTTCTCAGGCTC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1452 bp483 aa611512+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MNETERHNGSPASLFDELPAVEEQQVIAAKQARAASRRQGPPRLLQPNRGQIELRASDLESLLGEDHRARLVWGYVERQDLSRLIESIKARGSNAGRSAI
DPRILFALWLYATLDAVGSGREIARLTRESDAYRWICGGVSVNYHALNDFRSGNESLMDEVLTANVAALASAGAISLERVAQDGMRVRADAGAASFRRQA
SLEQHLAEAGELVDDIKKRAAADPAAASRRAQAARERAAQQREECIRAALEQLPQVQAAKRRNGEKPEQARASTTDADARVMKMGDGGYRPAFNVQLATT
CEDQVIVGVEVSNTGSDMAQMAPMLEQVIERTGTVPGQWLVDGGFPAHEQIEAVHAHTKGQTEVIAPVPEPRRKADKRDDDARPPPDKYRRKEGDSEPVA
QWRARMAGDEIKDVYKQRAATAECVNALARNRGLQRMPVRGLGKVRAVAYLYALAHNLMRMAKIAPQMLGRGSGASKIAAALA

 

Blast result :
Comments
ISThph1 is 70% aa similar to ISAcc1.
References
1] ISfinder annotation (2016)
2] Liu,B., Shapleigh,J.P. and Frostegard,A.H. (2012) Direct submission GenBank.