ISThph1
- Family IS1182
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
AMXF01000064 | ND | Thauera phenylacetica | Thauera phenylacetica B4P |
DNA section
IS Length : 1674 bp
Ends
IR Length : 13/17
IRL : GAGCGTGAGAGTTTTTCTCCAATCTCGCCTGTTTGTGCTGGGACTGGCAT
IRR : GAGCCTGAGAAGCATTTGATTTCCGCAAGCCGAGTAACCGACATGCGACG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GTTCCAGGCCGGGCGGC | TGA | GCCAGCGTGTGCT | 3 |
CGGC | TGA | g | 3 |
GAGAGGATCTCAGGGGC | TGA | GACCAGCCGCCGA | 3 |
CGGGGTGCTCGCAGCGC | TGA | GACCGGTTTTTGT | 3 |
GCGCACGCGACGCCGGC | TGA | GCCCTCCCCGACC | 3 |
DNA sequence
GAGCGTGAGAGTTTTTCTCCAATCTCGCCTGTTTGTGCTGGGACTGGCATGCTCCGAGACATGAACGAGACCGAACGTCATAACGGATCGCCGGCCAGCC
TGTTCGATGAGCTGCCGGCTGTCGAGGAACAACAGGTGATCGCGGCGAAGCAGGCGCGGGCGGCTTCACGCCGGCAAGGCCCGCCGCGGTTGCTGCAGCC
CAACCGCGGGCAGATCGAACTGCGCGCCTCGGACCTGGAGTCGCTGCTGGGTGAGGATCACCGGGCTCGGCTGGTGTGGGGCTACGTCGAGCGGCAGGAC
CTGAGCCGGTTGATCGAATCGATCAAGGCCCGTGGCAGCAACGCCGGACGGTCGGCGATCGACCCGCGGATCCTGTTCGCGCTGTGGCTGTACGCCACGC
TCGATGCGGTGGGCAGCGGCCGGGAGATTGCCCGTCTCACGCGCGAGAGCGACGCCTACCGCTGGATCTGCGGTGGCGTGTCGGTGAATTACCACGCGCT
CAACGACTTTCGCTCAGGCAACGAGAGCTTGATGGACGAAGTGCTCACGGCCAATGTCGCTGCGCTGGCCTCGGCTGGGGCGATCAGCCTGGAGCGCGTG
GCGCAGGACGGCATGCGCGTGCGTGCCGATGCGGGCGCAGCGTCGTTTCGGCGGCAGGCCAGCCTCGAGCAGCACTTGGCCGAGGCCGGCGAGTTGGTCG
ATGACATCAAGAAACGCGCCGCGGCCGATCCGGCAGCGGCCAGCCGCCGGGCGCAGGCTGCGCGCGAGCGTGCCGCGCAGCAGCGCGAGGAGTGCATCCG
CGCCGCGCTGGAGCAACTGCCGCAGGTGCAGGCGGCCAAGCGGCGCAACGGTGAAAAGCCCGAGCAGGCACGAGCCAGCACCACGGATGCCGACGCGCGG
GTGATGAAGATGGGCGACGGCGGCTACCGGCCAGCGTTCAACGTACAACTGGCCACAACGTGCGAGGACCAGGTCATCGTCGGGGTGGAGGTGAGCAACA
CCGGCAGCGACATGGCGCAGATGGCGCCGATGCTCGAGCAGGTCATCGAGCGCACGGGCACCGTACCCGGGCAATGGCTGGTCGATGGGGGCTTTCCCGC
GCACGAGCAGATTGAGGCGGTGCATGCGCACACGAAAGGCCAGACCGAGGTCATCGCCCCGGTGCCCGAGCCCAGGCGCAAGGCAGACAAGCGCGACGAC
GACGCCCGCCCGCCGCCGGACAAGTACCGGCGCAAGGAAGGGGACTCCGAGCCGGTGGCGCAGTGGCGTGCGCGCATGGCCGGCGACGAGATCAAGGATG
TGTACAAGCAACGCGCGGCCACGGCCGAGTGCGTCAACGCACTGGCGCGCAACCGCGGACTGCAGCGCATGCCTGTGCGCGGGCTGGGCAAGGTTCGAGC
GGTGGCCTACCTGTACGCGCTGGCGCACAACTTGATGCGCATGGCCAAGATCGCGCCGCAGATGCTCGGTCGAGGTAGCGGTGCGTCCAAAATCGCCGCA
GCGCTGGCATAAGAGGTGCCTGAAATGAAAACCCGCCGCCTGAAAACCCCGGATCTGCCCTCACAGACGCTTGGCTGGGCCTCGAACACCCCACAGCACC
TGCGCATCGCAGGCCACTGGGTCTCGTCGCATGTCGGTTACTCGGCTTGCGGAAATCAAATGCTTCTCAGGCTC
TGTTCGATGAGCTGCCGGCTGTCGAGGAACAACAGGTGATCGCGGCGAAGCAGGCGCGGGCGGCTTCACGCCGGCAAGGCCCGCCGCGGTTGCTGCAGCC
CAACCGCGGGCAGATCGAACTGCGCGCCTCGGACCTGGAGTCGCTGCTGGGTGAGGATCACCGGGCTCGGCTGGTGTGGGGCTACGTCGAGCGGCAGGAC
CTGAGCCGGTTGATCGAATCGATCAAGGCCCGTGGCAGCAACGCCGGACGGTCGGCGATCGACCCGCGGATCCTGTTCGCGCTGTGGCTGTACGCCACGC
TCGATGCGGTGGGCAGCGGCCGGGAGATTGCCCGTCTCACGCGCGAGAGCGACGCCTACCGCTGGATCTGCGGTGGCGTGTCGGTGAATTACCACGCGCT
CAACGACTTTCGCTCAGGCAACGAGAGCTTGATGGACGAAGTGCTCACGGCCAATGTCGCTGCGCTGGCCTCGGCTGGGGCGATCAGCCTGGAGCGCGTG
GCGCAGGACGGCATGCGCGTGCGTGCCGATGCGGGCGCAGCGTCGTTTCGGCGGCAGGCCAGCCTCGAGCAGCACTTGGCCGAGGCCGGCGAGTTGGTCG
ATGACATCAAGAAACGCGCCGCGGCCGATCCGGCAGCGGCCAGCCGCCGGGCGCAGGCTGCGCGCGAGCGTGCCGCGCAGCAGCGCGAGGAGTGCATCCG
CGCCGCGCTGGAGCAACTGCCGCAGGTGCAGGCGGCCAAGCGGCGCAACGGTGAAAAGCCCGAGCAGGCACGAGCCAGCACCACGGATGCCGACGCGCGG
GTGATGAAGATGGGCGACGGCGGCTACCGGCCAGCGTTCAACGTACAACTGGCCACAACGTGCGAGGACCAGGTCATCGTCGGGGTGGAGGTGAGCAACA
CCGGCAGCGACATGGCGCAGATGGCGCCGATGCTCGAGCAGGTCATCGAGCGCACGGGCACCGTACCCGGGCAATGGCTGGTCGATGGGGGCTTTCCCGC
GCACGAGCAGATTGAGGCGGTGCATGCGCACACGAAAGGCCAGACCGAGGTCATCGCCCCGGTGCCCGAGCCCAGGCGCAAGGCAGACAAGCGCGACGAC
GACGCCCGCCCGCCGCCGGACAAGTACCGGCGCAAGGAAGGGGACTCCGAGCCGGTGGCGCAGTGGCGTGCGCGCATGGCCGGCGACGAGATCAAGGATG
TGTACAAGCAACGCGCGGCCACGGCCGAGTGCGTCAACGCACTGGCGCGCAACCGCGGACTGCAGCGCATGCCTGTGCGCGGGCTGGGCAAGGTTCGAGC
GGTGGCCTACCTGTACGCGCTGGCGCACAACTTGATGCGCATGGCCAAGATCGCGCCGCAGATGCTCGGTCGAGGTAGCGGTGCGTCCAAAATCGCCGCA
GCGCTGGCATAAGAGGTGCCTGAAATGAAAACCCGCCGCCTGAAAACCCCGGATCTGCCCTCACAGACGCTTGGCTGGGCCTCGAACACCCCACAGCACC
TGCGCATCGCAGGCCACTGGGTCTCGTCGCATGTCGGTTACTCGGCTTGCGGAAATCAAATGCTTCTCAGGCTC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1452 bp | 483 aa | 61 | 1512 | + | No |
Chemistry : DDE
ORF sequence :
MNETERHNGSPASLFDELPAVEEQQVIAAKQARAASRRQGPPRLLQPNRGQIELRASDLESLLGEDHRARLVWGYVERQDLSRLIESIKARGSNAGRSAI
DPRILFALWLYATLDAVGSGREIARLTRESDAYRWICGGVSVNYHALNDFRSGNESLMDEVLTANVAALASAGAISLERVAQDGMRVRADAGAASFRRQA
SLEQHLAEAGELVDDIKKRAAADPAAASRRAQAARERAAQQREECIRAALEQLPQVQAAKRRNGEKPEQARASTTDADARVMKMGDGGYRPAFNVQLATT
CEDQVIVGVEVSNTGSDMAQMAPMLEQVIERTGTVPGQWLVDGGFPAHEQIEAVHAHTKGQTEVIAPVPEPRRKADKRDDDARPPPDKYRRKEGDSEPVA
QWRARMAGDEIKDVYKQRAATAECVNALARNRGLQRMPVRGLGKVRAVAYLYALAHNLMRMAKIAPQMLGRGSGASKIAAALA
DPRILFALWLYATLDAVGSGREIARLTRESDAYRWICGGVSVNYHALNDFRSGNESLMDEVLTANVAALASAGAISLERVAQDGMRVRADAGAASFRRQA
SLEQHLAEAGELVDDIKKRAAADPAAASRRAQAARERAAQQREECIRAALEQLPQVQAAKRRNGEKPEQARASTTDADARVMKMGDGGYRPAFNVQLATT
CEDQVIVGVEVSNTGSDMAQMAPMLEQVIERTGTVPGQWLVDGGFPAHEQIEAVHAHTKGQTEVIAPVPEPRRKADKRDDDARPPPDKYRRKEGDSEPVA
QWRARMAGDEIKDVYKQRAATAECVNALARNRGLQRMPVRGLGKVRAVAYLYALAHNLMRMAKIAPQMLGRGSGASKIAAALA
Blast result :
Comments
ISThph1 is 70% aa similar to ISAcc1.
References
1] ISfinder annotation (2016)
2] Liu,B., Shapleigh,J.P. and Frostegard,A.H. (2012) Direct submission GenBank.
2] Liu,B., Shapleigh,J.P. and Frostegard,A.H. (2012) Direct submission GenBank.