ISTars1

  • Family IS1182
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
FP475956 ND Thiomonas arsenitoxydans
Thiomonas arsenitoxydans 3As
DNA section
IS Length : 1656 bp

Ends


IR Length : 16/22

IRL : GAGTCTGTGAACATTTGATTTTGATGGCACGAATGCTGCGTGTCTTTGGG
IRR : GTGCCTGTGAACGTTTCAACTTCCGCGATGATCTCAACGCATCGAGACGC

Insertion site


Left flankDirect repeatRight flankDR Length
CTCAGCCGCCCGTTGATCTCACTCGGCATGGCCGGCAAATC3

DNA sequence

GAGTCTGTGAACATTTGATTTTGATGGCACGAATGCTGCGTGTCTTTGGGCATGAGCAATATCACGAACGAAGCGGGAACGAACGGGCACACAGGTGCCC
TGTTTGAGGGCTTGGCGGTCCCTGCGGACAGTGCGGCTGCTCTGAAGCGCAGTAAGCCCCAAGGGACGCCGCGGGAGCAAAGCGCGATGCGCAACCAAGT
CGAATGGCGGGCCTGCGATCTTGACTCGACGCTGCCGGCCGATCATCAGGCCCGTGCCGTCTGGGCCTTTGTGCAGTCGCTCGATCTTCAAGCCCTGCAC
GGACAGATCCGCGCCGTTGAGGGCAGCGTCGGACGCGCGCCCATTGATCCGGCCATTTTGATGAGCCTGTGGCTGTACGCGACGCTCGACGGTGTGGGCT
CGGCGCGCGAACTGGGTCGGCTGTGCGACAGCGACGACGCCTACCGCTGGCTGTGCGGCGGGGTGGGCGTGAACCACCACACGCTGGGCGACTTCCGGGT
CGAGCTGAACCGGGTGGCCCACGACGGCATGCGCGTGCGTGCCCAGGCGGGTGCGGCCAGCTTTCGGCGTCGCGAGACCTTGGAGCAACTCATGCAAGAC
GCGCAGGCCCAGGTGCAAGCACTCAAGCAGGAGGTGGGCGACGATCCCGGGGCCGGCACCCGCCGCGTGCGTGCGGCGCGTCAACGTGCGGTCGTTGAAC
GCGAACAACGCATTGCGCGCGCCATCGAGGCGATGGCCGAGATCGACAAGAGCCTCTCGGCCAAGGGCAAGAAGGCCCGAGCCAACAGCACGCAGGCCGA
CAGGGCACAAGACGAGCCGGCGCAACCCCAGGCGGCCCCGACCACGCAACCCGTGGGCGAGCAATCCGCCGAGGAACAACCCAACGAGGCCAGGCGCACC
AAGAAACCCAAGGAACCGCGCGTGAGCACCACCGACCACGAGGCGCGTGTGATGAAGATGGCCGATGGGGGCTTTCGCCCGGCGTTCAATGCGCAACTCG
CGGTGGACACCGCCACCCTGATCATCACCGGCGTGGACCTCATCAACTCGGGCAGCGACATGAACCAGATGCTGCCCATGCACGCGCAGCACCAGGACCG
CTATGGTCAAGTGCCCGCGCAGTGGTTGACCGATGGGGGCTTTGCCCAGCACGCGCACATCGAGGAACTCGATGCGCGCGCCACCCAAGCGTTCGCGCCT
GTGGTGGCGCCCAAGGCCCCGCAACGTGATCGCTATGCTGCGCTGCCCGGCGACAGCCAGGCGCTGGGCCAGTGGCGCCAGCGCATGGGCACCGAGGCGG
CCAAGCGAATCTACAAGGAACGTGCTGCCAGCATCGAGTGCGCCAACGCCCGTTTGCGCAACCGCGGCTTGCAGCGCTTGAACGTGCGCGGAATGATCAA
GGCGCGCGCCGTGTTGCTGTGGCATGCGCTGGCCCACAATTTGAAGCGGATGATGGCGCTGAACTTCGCGTTCGCGCCCTGAGAGGCCGGCAAGGGTCGG
CGCGGGCTGCGTTTGCGCTCCACCAGGCCCTGCATCAACGCCAAGCTCGTCCCAACAAACAAACGGCGGCTCGAATCGACTCGTCGCGCCCGTCCGCAGC
GCATGGGCGTCTCGATGCGTTGAGATCATCGCGGAAGTTGAAACGTTCACAGGCAC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1383 bp460 aa1001482+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MFEGLAVPADSAAALKRSKPQGTPREQSAMRNQVEWRACDLDSTLPADHQARAVWAFVQSLDLQALHGQIRAVEGSVGRAPIDPAILMSLWLYATLDGVG
SARELGRLCDSDDAYRWLCGGVGVNHHTLGDFRVELNRVAHDGMRVRAQAGAASFRRRETLEQLMQDAQAQVQALKQEVGDDPGAGTRRVRAARQRAVVE
REQRIARAIEAMAEIDKSLSAKGKKARANSTQADRAQDEPAQPQAAPTTQPVGEQSAEEQPNEARRTKKPKEPRVSTTDHEARVMKMADGGFRPAFNAQL
AVDTATLIITGVDLINSGSDMNQMLPMHAQHQDRYGQVPAQWLTDGGFAQHAHIEELDARATQAFAPVVAPKAPQRDRYAALPGDSQALGQWRQRMGTEA
AKRIYKERAASIECANARLRNRGLQRLNVRGMIKARAVLLWHALAHNLKRMMALNFAFAP

 

Blast result :
Comments
ISTars1 is 94% aa similar to ISThsp22.
References
1] ISfinder annotation (2016)
2] Genoscope - CEA - Centre National de Sequencage - FRANCE. Direct submission GenBank.