ISCfr4
- Family IS30
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
ND | Citrobacter freundii | Citrobacter freundii |
DNA section
IS Length : 1253 bp
Ends
IR Length : 23/27
IRL : AATGTCCGCTTCTCGCTGTGAGTTCAATGGGTCGATGCAACGCTATCCTT
IRR : AATGTCCGCTAAGAGCTGTGAGTTCAACTGATGGACGCAACACACTTATT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|
DNA sequence
AATGTCCGCTTCTCGCTGTGAGTTCAATGGGTCGATGCAACGCTATCCTTAATCAAGGGGGACGTTGTCATGAAACGAAGAACTCGGATTAACTACACGC
CAGAGCAGAAGGCAATTATCTGGGACAGATATAAGCAAGGTGATTCTCTACATGATATCGCCAGAATGTTCGACAGATATCATTCTTCCATTATGCCCAC
TATCCACCAGACAGGCGGCTACCGTCCTCCCGTGCGAAAACGGCACCGATTAGCGCTTTCGCTTGATGAAAGAGAGGAGATATCCAGAGGGCTGGTAGCA
AAACTCAGCATCAGGGACATCGCCGCCAAATTATCAAGAGCGCCCTCAACGATTAGCCGCGAGGTCAGGAGGCACAGTGGTGCAAAACAATACCGAGCAG
CAAAAGCCGATGCTACTGCGTGGGAAAATGCGCTGAGACCAAAACCGTGCAAGCTAATTGAAAGCCCCGCATTGTGTAAAATCATTGCAGAGAAGATGCA
TCAGGACTGGTCGCCGGAACAGATCGCCGGTTGGCTGAAACGTTGTTATCCGGATAATCAGGAAATGCATGTGTCACACGAAACGATTTATAAAACGCTT
TTTATACAAACCCGGGGAGCATTAAAAAAAGAGCTGCAGCAATGCCTCAGAAGCGGAAGAGCAGTGCGTAGATCCAGAACGTCATCGCTTAAAGGGAAAG
GATTAGGGTCAATCCCGAACACGATACCTATCAGCGAAAGGCCACCAGAGGCGGCTGACAGAGCCATTCCAGGTCACTGGGAAGGTGACTTGATTCAGGG
CTCGAAAAACTCCTATATAATCACCCTCGTAGAACGTCATTCCCGTTTTGTTATGCTGGCGAAGATCAGAGACAACAAGACCATAACGGTTATATCTGCA
CTCATCAGACAAGCCCGGGAATTACCTGCTGAACTTTATAAAACATTAACCTGGGACCGGGGCGCTGAAATGACCAGCCACACCCGGTTTACTGTAGCCA
CAGATATTCAGGTTTACTTCTGCGATCCTCAATCCCCCTGGCAACGTGGCTCAAATGAAAATACGAACAGATTGCTCAGACAATATTTTCCAAAAGGAAC
TGACTTATCGGTTCACAGCCAGCAAAGACTTAACAGTGTTGCCAGACAGCTCAACGAAAGGCCGAGAAAAACGCTAGACTATGAATCACCCGCAGAACGG
TTCAATAAGTGTGTTGCGTCCATCAGTTGAACTCACAGCTCTTAGCGGACATT
CAGAGCAGAAGGCAATTATCTGGGACAGATATAAGCAAGGTGATTCTCTACATGATATCGCCAGAATGTTCGACAGATATCATTCTTCCATTATGCCCAC
TATCCACCAGACAGGCGGCTACCGTCCTCCCGTGCGAAAACGGCACCGATTAGCGCTTTCGCTTGATGAAAGAGAGGAGATATCCAGAGGGCTGGTAGCA
AAACTCAGCATCAGGGACATCGCCGCCAAATTATCAAGAGCGCCCTCAACGATTAGCCGCGAGGTCAGGAGGCACAGTGGTGCAAAACAATACCGAGCAG
CAAAAGCCGATGCTACTGCGTGGGAAAATGCGCTGAGACCAAAACCGTGCAAGCTAATTGAAAGCCCCGCATTGTGTAAAATCATTGCAGAGAAGATGCA
TCAGGACTGGTCGCCGGAACAGATCGCCGGTTGGCTGAAACGTTGTTATCCGGATAATCAGGAAATGCATGTGTCACACGAAACGATTTATAAAACGCTT
TTTATACAAACCCGGGGAGCATTAAAAAAAGAGCTGCAGCAATGCCTCAGAAGCGGAAGAGCAGTGCGTAGATCCAGAACGTCATCGCTTAAAGGGAAAG
GATTAGGGTCAATCCCGAACACGATACCTATCAGCGAAAGGCCACCAGAGGCGGCTGACAGAGCCATTCCAGGTCACTGGGAAGGTGACTTGATTCAGGG
CTCGAAAAACTCCTATATAATCACCCTCGTAGAACGTCATTCCCGTTTTGTTATGCTGGCGAAGATCAGAGACAACAAGACCATAACGGTTATATCTGCA
CTCATCAGACAAGCCCGGGAATTACCTGCTGAACTTTATAAAACATTAACCTGGGACCGGGGCGCTGAAATGACCAGCCACACCCGGTTTACTGTAGCCA
CAGATATTCAGGTTTACTTCTGCGATCCTCAATCCCCCTGGCAACGTGGCTCAAATGAAAATACGAACAGATTGCTCAGACAATATTTTCCAAAAGGAAC
TGACTTATCGGTTCACAGCCAGCAAAGACTTAACAGTGTTGCCAGACAGCTCAACGAAAGGCCGAGAAAAACGCTAGACTATGAATCACCCGCAGAACGG
TTCAATAAGTGTGTTGCGTCCATCAGTTGAACTCACAGCTCTTAGCGGACATT
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1161 bp | 386 aa | 70 | 1230 | + | No |
Chemistry : DDE
ORF sequence :
MKRRTRINYTPEQKAIIWDRYKQGDSLHDIARMFDRYHSSIMPTIHQTGGYRPPVRKRHRLALSLDEREEISRGLVAKLSIRDIAAKLSRAPSTISREVR
RHSGAKQYRAAKADATAWENALRPKPCKLIESPALCKIIAEKMHQDWSPEQIAGWLKRCYPDNQEMHVSHETIYKTLFIQTRGALKKELQQCLRSGRAVR
RSRTSSLKGKGLGSIPNTIPISERPPEAADRAIPGHWEGDLIQGSKNSYIITLVERHSRFVMLAKIRDNKTITVISALIRQARELPAELYKTLTWDRGAE
MTSHTRFTVATDIQVYFCDPQSPWQRGSNENTNRLLRQYFPKGTDLSVHSQQRLNSVARQLNERPRKTLDYESPAERFNKCVASIS
RHSGAKQYRAAKADATAWENALRPKPCKLIESPALCKIIAEKMHQDWSPEQIAGWLKRCYPDNQEMHVSHETIYKTLFIQTRGALKKELQQCLRSGRAVR
RSRTSSLKGKGLGSIPNTIPISERPPEAADRAIPGHWEGDLIQGSKNSYIITLVERHSRFVMLAKIRDNKTITVISALIRQARELPAELYKTLTWDRGAE
MTSHTRFTVATDIQVYFCDPQSPWQRGSNENTNRLLRQYFPKGTDLSVHSQQRLNSVARQLNERPRKTLDYESPAERFNKCVASIS
Blast result :
Comments
ISCfr4 is 77% aa similar to ISHar4.
References
[1] Zhou D. (2016) Direct submission