ISCfr4

  • Family IS30
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
ND Citrobacter freundii
Citrobacter freundii
DNA section
IS Length : 1253 bp

Ends


IR Length : 23/27

IRL : AATGTCCGCTTCTCGCTGTGAGTTCAATGGGTCGATGCAACGCTATCCTT
IRR : AATGTCCGCTAAGAGCTGTGAGTTCAACTGATGGACGCAACACACTTATT

Insertion site


Left flankDirect repeatRight flankDR Length

DNA sequence

AATGTCCGCTTCTCGCTGTGAGTTCAATGGGTCGATGCAACGCTATCCTTAATCAAGGGGGACGTTGTCATGAAACGAAGAACTCGGATTAACTACACGC
CAGAGCAGAAGGCAATTATCTGGGACAGATATAAGCAAGGTGATTCTCTACATGATATCGCCAGAATGTTCGACAGATATCATTCTTCCATTATGCCCAC
TATCCACCAGACAGGCGGCTACCGTCCTCCCGTGCGAAAACGGCACCGATTAGCGCTTTCGCTTGATGAAAGAGAGGAGATATCCAGAGGGCTGGTAGCA
AAACTCAGCATCAGGGACATCGCCGCCAAATTATCAAGAGCGCCCTCAACGATTAGCCGCGAGGTCAGGAGGCACAGTGGTGCAAAACAATACCGAGCAG
CAAAAGCCGATGCTACTGCGTGGGAAAATGCGCTGAGACCAAAACCGTGCAAGCTAATTGAAAGCCCCGCATTGTGTAAAATCATTGCAGAGAAGATGCA
TCAGGACTGGTCGCCGGAACAGATCGCCGGTTGGCTGAAACGTTGTTATCCGGATAATCAGGAAATGCATGTGTCACACGAAACGATTTATAAAACGCTT
TTTATACAAACCCGGGGAGCATTAAAAAAAGAGCTGCAGCAATGCCTCAGAAGCGGAAGAGCAGTGCGTAGATCCAGAACGTCATCGCTTAAAGGGAAAG
GATTAGGGTCAATCCCGAACACGATACCTATCAGCGAAAGGCCACCAGAGGCGGCTGACAGAGCCATTCCAGGTCACTGGGAAGGTGACTTGATTCAGGG
CTCGAAAAACTCCTATATAATCACCCTCGTAGAACGTCATTCCCGTTTTGTTATGCTGGCGAAGATCAGAGACAACAAGACCATAACGGTTATATCTGCA
CTCATCAGACAAGCCCGGGAATTACCTGCTGAACTTTATAAAACATTAACCTGGGACCGGGGCGCTGAAATGACCAGCCACACCCGGTTTACTGTAGCCA
CAGATATTCAGGTTTACTTCTGCGATCCTCAATCCCCCTGGCAACGTGGCTCAAATGAAAATACGAACAGATTGCTCAGACAATATTTTCCAAAAGGAAC
TGACTTATCGGTTCACAGCCAGCAAAGACTTAACAGTGTTGCCAGACAGCTCAACGAAAGGCCGAGAAAAACGCTAGACTATGAATCACCCGCAGAACGG
TTCAATAAGTGTGTTGCGTCCATCAGTTGAACTCACAGCTCTTAGCGGACATT
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1161 bp386 aa701230+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MKRRTRINYTPEQKAIIWDRYKQGDSLHDIARMFDRYHSSIMPTIHQTGGYRPPVRKRHRLALSLDEREEISRGLVAKLSIRDIAAKLSRAPSTISREVR
RHSGAKQYRAAKADATAWENALRPKPCKLIESPALCKIIAEKMHQDWSPEQIAGWLKRCYPDNQEMHVSHETIYKTLFIQTRGALKKELQQCLRSGRAVR
RSRTSSLKGKGLGSIPNTIPISERPPEAADRAIPGHWEGDLIQGSKNSYIITLVERHSRFVMLAKIRDNKTITVISALIRQARELPAELYKTLTWDRGAE
MTSHTRFTVATDIQVYFCDPQSPWQRGSNENTNRLLRQYFPKGTDLSVHSQQRLNSVARQLNERPRKTLDYESPAERFNKCVASIS

 

Blast result :
Comments
ISCfr4 is 77% aa similar to ISHar4.
References
[1] Zhou D. (2016) Direct submission