ISBra1
- Family IS1182
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
LLYA01000109 | ND | Bradyrhizobium retamae | Bradyrhizobium retamae Ro19 |
DNA section
IS Length : 1520 bp
Ends
IR Length : 16/17
IRL : GAGGCTGTGAATCTTTTCATGGCGGAGGGTCGGCGGCCATGATTCTCTGC
IRR : GAGCCTGTGAACCATTTGGGTTTTGCGGGTAGTCGGAGCCGAGACAACGG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
CC | TAC | G | 3 |
DNA sequence
GAGGCTGTGAATCTTTTCATGGCGGAGGGTCGGCGGCCATGATTCTCTGCAATGATTAATTTGCGGGAGAGGATGATGACTGGCCGCGGGCTATTTGGAG
AACTGCCGGAACAGACGGAGCCGCGAGCTGATGCAGCGCCGCGCGGAGCGCCGCGTCTGCGCGAGCCGATGCGCGACCAGGTCGAACTGCGAGCCGTCGA
TATCGATAGCCTGATCGGGCAGGATCATCCGGCGCGAGTGATCTGGGCCTATGTCGAAGGGCTCGAGCTGAGCGAGCTAGAGGATCGGGTCAAGGCGCGG
GAGAACCGGCCCGGCCATCCGGCGCCTTCGCCACGGCTGCTGCTGGCGCTTTGGCTGTACGCCACGAGCGACGGCGTCGGAAGCGCGCGGGCGTTGGACC
GGCTCTGCGACAGCCATGACGTCTATCGCTGGCTCTGTGGCGGGGTGTCACTGAACTATCACACGCTGTCGGACTTCCGGGTCGGTTGTGCCGATCTGCT
CGACCGCTTGTTGAGCGAACATCTGGCGGCGCTGAGCAAGGCGGGGCTGGTTGATCTGGAGAAGTTGACCCAGGACGGGGTGCGGATACGGGCGAATGCG
GGAGCCGGATCGTTCCGCCGGGAGGCGACACTGGATCGGCAGATGGCGCAGGCCCAGGCTGTAGTGGAAGAACTCAAGCGCGAGGTCGATGCGGATCCGG
AAGCCAGCAACCGGCGCATCCGGGCCGCCAGAGAGCGCGCGGCGCGCGAACGCAGCGAGCGGGTGCAAGCTGCGCAAACGGCGCTGGCCGAGATCAAGCG
CAAGCGAAAGCAGCTCGACGAAAAGGGTGGCAATGGCAAAAAGCCGAAGGAGCCTCGGGCCTCCACCACGGACCCGCAGGCGCGGGTGATGAAGATGGCG
GATGCCGGCTTCCGCCCGGCCTACAACGTGCAGGTCGCCAGTGCGGCGGGCGAACTGATCGTGGTCACGGTCGAGATCGACAACAACGGATCAGATCGCG
GCTTGATGCGGCCGATGCTGGAACGAACGCGCGCACTGCTGAAGTGCTTTCCCCGCCGCCATCTCGTCGATGGCGGGTTCTGCAGTGCCGAGGACATCGA
GTGGGCGCATGGCGAAGGCATCGAGGTTTACTGTCCACCGACCAAATCCAGGAGCGGTGTCGATCCTTTTCTACCCCGGAGCGGCGACGGCCCCGGGGTC
TTGGCCTGGCGAGCTCGCATGGCCAGCGAGGCCGGCAAGGCACAGTACAAGGCCCGCTCGATCTGCGAATGCATCCATGCCCGCTGGCGCAACTGGGACC
TCAGGCAATTGACCGTGCGCGGCATCGATAAGGTCCGCGCCGTCGTGCTCTGGTACGCGCTCACCAACAACATCCTGCAAGGACATCGCCTCGCCAACGC
ATAGCCGCGCCAACCATAGCGGCGGGACCGCAAATCCCGCCTCTGCACTACCGTCGAGGCCGTTCAACATCCGTTGTCTCGGCTCCGACTACCCGCAAAA
CCCAAATGGTTCACAGGCTC
AACTGCCGGAACAGACGGAGCCGCGAGCTGATGCAGCGCCGCGCGGAGCGCCGCGTCTGCGCGAGCCGATGCGCGACCAGGTCGAACTGCGAGCCGTCGA
TATCGATAGCCTGATCGGGCAGGATCATCCGGCGCGAGTGATCTGGGCCTATGTCGAAGGGCTCGAGCTGAGCGAGCTAGAGGATCGGGTCAAGGCGCGG
GAGAACCGGCCCGGCCATCCGGCGCCTTCGCCACGGCTGCTGCTGGCGCTTTGGCTGTACGCCACGAGCGACGGCGTCGGAAGCGCGCGGGCGTTGGACC
GGCTCTGCGACAGCCATGACGTCTATCGCTGGCTCTGTGGCGGGGTGTCACTGAACTATCACACGCTGTCGGACTTCCGGGTCGGTTGTGCCGATCTGCT
CGACCGCTTGTTGAGCGAACATCTGGCGGCGCTGAGCAAGGCGGGGCTGGTTGATCTGGAGAAGTTGACCCAGGACGGGGTGCGGATACGGGCGAATGCG
GGAGCCGGATCGTTCCGCCGGGAGGCGACACTGGATCGGCAGATGGCGCAGGCCCAGGCTGTAGTGGAAGAACTCAAGCGCGAGGTCGATGCGGATCCGG
AAGCCAGCAACCGGCGCATCCGGGCCGCCAGAGAGCGCGCGGCGCGCGAACGCAGCGAGCGGGTGCAAGCTGCGCAAACGGCGCTGGCCGAGATCAAGCG
CAAGCGAAAGCAGCTCGACGAAAAGGGTGGCAATGGCAAAAAGCCGAAGGAGCCTCGGGCCTCCACCACGGACCCGCAGGCGCGGGTGATGAAGATGGCG
GATGCCGGCTTCCGCCCGGCCTACAACGTGCAGGTCGCCAGTGCGGCGGGCGAACTGATCGTGGTCACGGTCGAGATCGACAACAACGGATCAGATCGCG
GCTTGATGCGGCCGATGCTGGAACGAACGCGCGCACTGCTGAAGTGCTTTCCCCGCCGCCATCTCGTCGATGGCGGGTTCTGCAGTGCCGAGGACATCGA
GTGGGCGCATGGCGAAGGCATCGAGGTTTACTGTCCACCGACCAAATCCAGGAGCGGTGTCGATCCTTTTCTACCCCGGAGCGGCGACGGCCCCGGGGTC
TTGGCCTGGCGAGCTCGCATGGCCAGCGAGGCCGGCAAGGCACAGTACAAGGCCCGCTCGATCTGCGAATGCATCCATGCCCGCTGGCGCAACTGGGACC
TCAGGCAATTGACCGTGCGCGGCATCGATAAGGTCCGCGCCGTCGTGCTCTGGTACGCGCTCACCAACAACATCCTGCAAGGACATCGCCTCGCCAACGC
ATAGCCGCGCCAACCATAGCGGCGGGACCGCAAATCCCGCCTCTGCACTACCGTCGAGGCCGTTCAACATCCGTTGTCTCGGCTCCGACTACCCGCAAAA
CCCAAATGGTTCACAGGCTC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1332 bp | 443 aa | 73 | 1404 | + | No |
Chemistry : DDE
ORF sequence :
MMTGRGLFGELPEQTEPRADAAPRGAPRLREPMRDQVELRAVDIDSLIGQDHPARVIWAYVEGLELSELEDRVKARENRPGHPAPSPRLLLALWLYATSD
GVGSARALDRLCDSHDVYRWLCGGVSLNYHTLSDFRVGCADLLDRLLSEHLAALSKAGLVDLEKLTQDGVRIRANAGAGSFRREATLDRQMAQAQAVVEE
LKREVDADPEASNRRIRAARERAARERSERVQAAQTALAEIKRKRKQLDEKGGNGKKPKEPRASTTDPQARVMKMADAGFRPAYNVQVASAAGELIVVTV
EIDNNGSDRGLMRPMLERTRALLKCFPRRHLVDGGFCSAEDIEWAHGEGIEVYCPPTKSRSGVDPFLPRSGDGPGVLAWRARMASEAGKAQYKARSICEC
IHARWRNWDLRQLTVRGIDKVRAVVLWYALTNNILQGHRLANA
GVGSARALDRLCDSHDVYRWLCGGVSLNYHTLSDFRVGCADLLDRLLSEHLAALSKAGLVDLEKLTQDGVRIRANAGAGSFRREATLDRQMAQAQAVVEE
LKREVDADPEASNRRIRAARERAARERSERVQAAQTALAEIKRKRKQLDEKGGNGKKPKEPRASTTDPQARVMKMADAGFRPAYNVQVASAAGELIVVTV
EIDNNGSDRGLMRPMLERTRALLKCFPRRHLVDGGFCSAEDIEWAHGEGIEVYCPPTKSRSGVDPFLPRSGDGPGVLAWRARMASEAGKAQYKARSICEC
IHARWRNWDLRQLTVRGIDKVRAVVLWYALTNNILQGHRLANA
Blast result :
Comments
ISBra1 is 95% aa similar to ISBrsp8.
References
1] ISfinder annotation (2016)
2] Duran,D., Rey,L., Navarro,A., Busquets,A., Imperial,J. and Ruiz-Argueso,T. (2014) Direct submission GenBank.
2] Duran,D., Rey,L., Navarro,A., Busquets,A., Imperial,J. and Ruiz-Argueso,T. (2014) Direct submission GenBank.