ISBra1

  • Family IS1182
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
LLYA01000109 ND Bradyrhizobium retamae
Bradyrhizobium retamae Ro19
DNA section
IS Length : 1520 bp

Ends


IR Length : 16/17

IRL : GAGGCTGTGAATCTTTTCATGGCGGAGGGTCGGCGGCCATGATTCTCTGC
IRR : GAGCCTGTGAACCATTTGGGTTTTGCGGGTAGTCGGAGCCGAGACAACGG

Insertion site


Left flankDirect repeatRight flankDR Length
CCTACG3

DNA sequence

GAGGCTGTGAATCTTTTCATGGCGGAGGGTCGGCGGCCATGATTCTCTGCAATGATTAATTTGCGGGAGAGGATGATGACTGGCCGCGGGCTATTTGGAG
AACTGCCGGAACAGACGGAGCCGCGAGCTGATGCAGCGCCGCGCGGAGCGCCGCGTCTGCGCGAGCCGATGCGCGACCAGGTCGAACTGCGAGCCGTCGA
TATCGATAGCCTGATCGGGCAGGATCATCCGGCGCGAGTGATCTGGGCCTATGTCGAAGGGCTCGAGCTGAGCGAGCTAGAGGATCGGGTCAAGGCGCGG
GAGAACCGGCCCGGCCATCCGGCGCCTTCGCCACGGCTGCTGCTGGCGCTTTGGCTGTACGCCACGAGCGACGGCGTCGGAAGCGCGCGGGCGTTGGACC
GGCTCTGCGACAGCCATGACGTCTATCGCTGGCTCTGTGGCGGGGTGTCACTGAACTATCACACGCTGTCGGACTTCCGGGTCGGTTGTGCCGATCTGCT
CGACCGCTTGTTGAGCGAACATCTGGCGGCGCTGAGCAAGGCGGGGCTGGTTGATCTGGAGAAGTTGACCCAGGACGGGGTGCGGATACGGGCGAATGCG
GGAGCCGGATCGTTCCGCCGGGAGGCGACACTGGATCGGCAGATGGCGCAGGCCCAGGCTGTAGTGGAAGAACTCAAGCGCGAGGTCGATGCGGATCCGG
AAGCCAGCAACCGGCGCATCCGGGCCGCCAGAGAGCGCGCGGCGCGCGAACGCAGCGAGCGGGTGCAAGCTGCGCAAACGGCGCTGGCCGAGATCAAGCG
CAAGCGAAAGCAGCTCGACGAAAAGGGTGGCAATGGCAAAAAGCCGAAGGAGCCTCGGGCCTCCACCACGGACCCGCAGGCGCGGGTGATGAAGATGGCG
GATGCCGGCTTCCGCCCGGCCTACAACGTGCAGGTCGCCAGTGCGGCGGGCGAACTGATCGTGGTCACGGTCGAGATCGACAACAACGGATCAGATCGCG
GCTTGATGCGGCCGATGCTGGAACGAACGCGCGCACTGCTGAAGTGCTTTCCCCGCCGCCATCTCGTCGATGGCGGGTTCTGCAGTGCCGAGGACATCGA
GTGGGCGCATGGCGAAGGCATCGAGGTTTACTGTCCACCGACCAAATCCAGGAGCGGTGTCGATCCTTTTCTACCCCGGAGCGGCGACGGCCCCGGGGTC
TTGGCCTGGCGAGCTCGCATGGCCAGCGAGGCCGGCAAGGCACAGTACAAGGCCCGCTCGATCTGCGAATGCATCCATGCCCGCTGGCGCAACTGGGACC
TCAGGCAATTGACCGTGCGCGGCATCGATAAGGTCCGCGCCGTCGTGCTCTGGTACGCGCTCACCAACAACATCCTGCAAGGACATCGCCTCGCCAACGC
ATAGCCGCGCCAACCATAGCGGCGGGACCGCAAATCCCGCCTCTGCACTACCGTCGAGGCCGTTCAACATCCGTTGTCTCGGCTCCGACTACCCGCAAAA
CCCAAATGGTTCACAGGCTC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1332 bp443 aa731404+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MMTGRGLFGELPEQTEPRADAAPRGAPRLREPMRDQVELRAVDIDSLIGQDHPARVIWAYVEGLELSELEDRVKARENRPGHPAPSPRLLLALWLYATSD
GVGSARALDRLCDSHDVYRWLCGGVSLNYHTLSDFRVGCADLLDRLLSEHLAALSKAGLVDLEKLTQDGVRIRANAGAGSFRREATLDRQMAQAQAVVEE
LKREVDADPEASNRRIRAARERAARERSERVQAAQTALAEIKRKRKQLDEKGGNGKKPKEPRASTTDPQARVMKMADAGFRPAYNVQVASAAGELIVVTV
EIDNNGSDRGLMRPMLERTRALLKCFPRRHLVDGGFCSAEDIEWAHGEGIEVYCPPTKSRSGVDPFLPRSGDGPGVLAWRARMASEAGKAQYKARSICEC
IHARWRNWDLRQLTVRGIDKVRAVVLWYALTNNILQGHRLANA

 

Blast result :
Comments
ISBra1 is 95% aa similar to ISBrsp8.
References
1] ISfinder annotation (2016)
2] Duran,D., Rey,L., Navarro,A., Busquets,A., Imperial,J. and Ruiz-Argueso,T. (2014) Direct submission GenBank.