ISTvi2
- Family IS1182
- Group
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| CP003154 | ND | Thiocystis violascens | Thiocystis violascens DSM 198 |
DNA section
IS Length : 1648 bp
Ends
IR Length : 14/17
IRL : GAGGCTGTGAAAAAACCTCGCGGCCTGGCCGCTGCTCCTGGGGGGCGGTA
IRR : GAGGTTGTGAAGAAATCGATTTTCGCCCAGTGATGGCGACAGCGCTGCCC
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| CCCGCATTCGCCCGAAC | TCA | GTGCCCGCCGGAGGAGACA | 3 |
| ATTTTGTCTACACCCTC | TCA | GAGGGTGTAGACAAAATCA | 3 |
| ATTTTGTCTACACCCTC | TCA | GAGGAAGGGCGACGCTGAT | 3 |
DNA sequence
GAGGCTGTGAAAAAACCTCGCGGCCTGGCCGCTGCTCCTGGGGGGCGGTAAAATAGCCCCATCGAAGCAATGGCCCCCGGCGAGCAAACGATGGCGGATG
ATCTCCAACCTGGCCTGTTCGACGGCGTCCCGGACCTGCTGGCCCAGGCCGAGCAGCGTCAGGCGCCGCCCCCCGGGGTGGCGCGGGTGCGCTGGCCCAA
CCGGACGCAACGGGAACTGCGCCCGAGCGACCTGGACTCGCTGCTGCCCGAAGAGCACCGGGCGCGGGTTGTCTGGGCCTGGGTGGAACAGGCCGACTTG
AGCCGGATGTACGCCGACATCCGCGCGGTGGAAGGCGGCAGTGGGCGCACCGCGATCGCCCCGGAGATCCTGTTCGCCCTGTGGCTCTATGCCACGCTCG
ATGGGGTGGGCACGGCGCGAAGCGTGGCGCGCCTGACCCAAGCGCATGATGCCTATCGCTGGATCTGCGGCGGCGTGCAGGTCAACCATCACACTCTGTC
GGATTTCCGCAGCGCCCATGGCGAGACGTTCGAGGCGGTGCTGACCGACAGTGTCGCGGCCCTGATGGCGGTGGGGGCCGTGACCCTCAAGCGGGTCGCA
CAGGACGGCGTGCGCATCCGCGCCAGTGCCGGCGCGGCCTCGTTTCGGCGCGGTGAGACGCTGGAGCGGTGCCTGGAAGAGGCGCGGGCGCAGGTTGCCG
CCCTCAAGCAGCAGGCCGAAGAGAACTCCGGGGCGCGGACCCGGCGCCAACAGGCGGCGCGCGAGCGGGCCGCGCGGGAGCGCCGGGAGCGCATCGAGCA
GGCGCTGGAGCGGTTGCCCGAACTGGCCGAGATCAAGGCCAAGCAAGGCAAGCCGCGCGAGCAGGCGCGGGCCTCCACCACCGATGCCGAAGCCACGGTC
ATGAAGATGGGCGACGGGGGCTTCCGTCCCGCCTACAACGGTCAATACGCCACCGACACCGCCAGCCAAGTCGTCGTCGGTGTCGCGGCGGTTACCGTCG
GCACCGACATGGCGCAACTCCTACCCATGATCGAGCAGGTCGAGGAGCGTTGCGGACAGAGCCCCGATGAGTGGCTGGTCGACGGTGGCTATCCGGCCCA
TGACCAATTGGATCGCGCCGGCGCGCACACCTTAGTCTACGCTCCGGTGCCCAAACCGAAAGATGCCGCCACCGACCCGCATGTCGCCAAGGACGGCGAC
AGCGCCGCCGTCGGCGCCTGGCGTGAACGCATGGGAACGGACGCGGCCAAGGCGATCTACAAAAAGCGGGCAGCCACCGCCGAATGCGTCAACGCCCAGG
CGCGCGAACGCGGCCTGACCCGACTGCGGGTGCGTGGTGCCGCCAAAGTCCGCTGTGTGCTCCTGCTGCATGCCCTCGCCCACAATCTCATGCGTACACT
CGCCTTGGCGCCGAGTCTGCTGGGCGACGGGAAAGGCGCGTCTAGCGGAACCACAGTAACCGCATAAGGCACTGATTATAAATAATGTCGTCGGTTTCGG
CGCGAATTCTGCCGATCTCTGCCGATCTCTGCCGATTGATCGCCCCATTTCCCGATGATGGCTTCCTCTCCGCCTCGCGGCTCTGCGCGCAGCACAAAGG
GCAGCGCTGTCGCCATCACTGGGCGAAAATCGATTTCTTCACAACCTC
ATCTCCAACCTGGCCTGTTCGACGGCGTCCCGGACCTGCTGGCCCAGGCCGAGCAGCGTCAGGCGCCGCCCCCCGGGGTGGCGCGGGTGCGCTGGCCCAA
CCGGACGCAACGGGAACTGCGCCCGAGCGACCTGGACTCGCTGCTGCCCGAAGAGCACCGGGCGCGGGTTGTCTGGGCCTGGGTGGAACAGGCCGACTTG
AGCCGGATGTACGCCGACATCCGCGCGGTGGAAGGCGGCAGTGGGCGCACCGCGATCGCCCCGGAGATCCTGTTCGCCCTGTGGCTCTATGCCACGCTCG
ATGGGGTGGGCACGGCGCGAAGCGTGGCGCGCCTGACCCAAGCGCATGATGCCTATCGCTGGATCTGCGGCGGCGTGCAGGTCAACCATCACACTCTGTC
GGATTTCCGCAGCGCCCATGGCGAGACGTTCGAGGCGGTGCTGACCGACAGTGTCGCGGCCCTGATGGCGGTGGGGGCCGTGACCCTCAAGCGGGTCGCA
CAGGACGGCGTGCGCATCCGCGCCAGTGCCGGCGCGGCCTCGTTTCGGCGCGGTGAGACGCTGGAGCGGTGCCTGGAAGAGGCGCGGGCGCAGGTTGCCG
CCCTCAAGCAGCAGGCCGAAGAGAACTCCGGGGCGCGGACCCGGCGCCAACAGGCGGCGCGCGAGCGGGCCGCGCGGGAGCGCCGGGAGCGCATCGAGCA
GGCGCTGGAGCGGTTGCCCGAACTGGCCGAGATCAAGGCCAAGCAAGGCAAGCCGCGCGAGCAGGCGCGGGCCTCCACCACCGATGCCGAAGCCACGGTC
ATGAAGATGGGCGACGGGGGCTTCCGTCCCGCCTACAACGGTCAATACGCCACCGACACCGCCAGCCAAGTCGTCGTCGGTGTCGCGGCGGTTACCGTCG
GCACCGACATGGCGCAACTCCTACCCATGATCGAGCAGGTCGAGGAGCGTTGCGGACAGAGCCCCGATGAGTGGCTGGTCGACGGTGGCTATCCGGCCCA
TGACCAATTGGATCGCGCCGGCGCGCACACCTTAGTCTACGCTCCGGTGCCCAAACCGAAAGATGCCGCCACCGACCCGCATGTCGCCAAGGACGGCGAC
AGCGCCGCCGTCGGCGCCTGGCGTGAACGCATGGGAACGGACGCGGCCAAGGCGATCTACAAAAAGCGGGCAGCCACCGCCGAATGCGTCAACGCCCAGG
CGCGCGAACGCGGCCTGACCCGACTGCGGGTGCGTGGTGCCGCCAAAGTCCGCTGTGTGCTCCTGCTGCATGCCCTCGCCCACAATCTCATGCGTACACT
CGCCTTGGCGCCGAGTCTGCTGGGCGACGGGAAAGGCGCGTCTAGCGGAACCACAGTAACCGCATAAGGCACTGATTATAAATAATGTCGTCGGTTTCGG
CGCGAATTCTGCCGATCTCTGCCGATCTCTGCCGATTGATCGCCCCATTTCCCGATGATGGCTTCCTCTCCGCCTCGCGGCTCTGCGCGCAGCACAAAGG
GCAGCGCTGTCGCCATCACTGGGCGAAAATCGATTTCTTCACAACCTC
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 1377 bp | 458 aa | 91 | 1467 | + | No |
Chemistry : DDE
ORF sequence :
MADDLQPGLFDGVPDLLAQAEQRQAPPPGVARVRWPNRTQRELRPSDLDSLLPEEHRARVVWAWVEQADLSRMYADIRAVEGGSGRTAIAPEILFALWLY
ATLDGVGTARSVARLTQAHDAYRWICGGVQVNHHTLSDFRSAHGETFEAVLTDSVAALMAVGAVTLKRVAQDGVRIRASAGAASFRRGETLERCLEEARA
QVAALKQQAEENSGARTRRQQAARERAARERRERIEQALERLPELAEIKAKQGKPREQARASTTDAEATVMKMGDGGFRPAYNGQYATDTASQVVVGVAA
VTVGTDMAQLLPMIEQVEERCGQSPDEWLVDGGYPAHDQLDRAGAHTLVYAPVPKPKDAATDPHVAKDGDSAAVGAWRERMGTDAAKAIYKKRAATAECV
NAQARERGLTRLRVRGAAKVRCVLLLHALAHNLMRTLALAPSLLGDGKGASSGTTVTA
ATLDGVGTARSVARLTQAHDAYRWICGGVQVNHHTLSDFRSAHGETFEAVLTDSVAALMAVGAVTLKRVAQDGVRIRASAGAASFRRGETLERCLEEARA
QVAALKQQAEENSGARTRRQQAARERAARERRERIEQALERLPELAEIKAKQGKPREQARASTTDAEATVMKMGDGGFRPAYNGQYATDTASQVVVGVAA
VTVGTDMAQLLPMIEQVEERCGQSPDEWLVDGGYPAHDQLDRAGAHTLVYAPVPKPKDAATDPHVAKDGDSAAVGAWRERMGTDAAKAIYKKRAATAECV
NAQARERGLTRLRVRGAAKVRCVLLLHALAHNLMRTLALAPSLLGDGKGASSGTTVTA
Blast result :
Comments
ISTvi2 is 64% aa similar to ISPlpa2.
References
1] ISfinder annotation (2016)
2] Lucas,S., Han,J., Lapidus,A., Cheng,J.-F., Goodwin,L., Pitluck,S., Peters,L., Ovchinnikova,G., Teshima,H., Detter,J.C., Han,C., Tapia,R., Land,M., Hauser,L., Kyrpides,N., Ivanova,N., Pagani,I., Vogl,K., Liu,Z., Frigaard,N.-U., Bryant,D. and Woyke,T. (2012) Direct submission GenBank.
2] Lucas,S., Han,J., Lapidus,A., Cheng,J.-F., Goodwin,L., Pitluck,S., Peters,L., Ovchinnikova,G., Teshima,H., Detter,J.C., Han,C., Tapia,R., Land,M., Hauser,L., Kyrpides,N., Ivanova,N., Pagani,I., Vogl,K., Liu,Z., Frigaard,N.-U., Bryant,D. and Woyke,T. (2012) Direct submission GenBank.