ISBrsp9

  • Family IS1182
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
JYMR01000040 ND Bradyrhizobium sp.
Bradyrhizobium sp. LTSP849
Bradyrhizobium sp. LTSP857
DNA section
IS Length : 1511 bp

Ends


IR Length : 12/16

IRL : GAGCGTGTGATTTTTTGGCAGCGTGCCAGGTAAATCTGTCCGAATGCCGG
IRR : GAGCTTGTGACGCTTTTACTTGTTCGGAACGGAGTGGAGTTTCTTGTCGC

Insertion site


Left flankDirect repeatRight flankDR Length
CGGCCACCTCAGGATGACGGTGATGG3

DNA sequence

GAGCGTGTGATTTTTTGGCAGCGTGCCAGGTAAATCTGTCCGAATGCCGGTGGCATGTGATTCTCTGGCGATGATGGATTGGCGGGAGGCGAAGATGGCT
GCCGATGAATTGTTCGGTGATCTGCCGGCGCAATCGAAGCCTGAAGCCGACGCGGCGCCGCTCGGCGCGCCACGGCTGCGTGAGCCACAGCGCGACCAGA
TCGCGTTGCGAGCGGTGGATATCGAGAGCCTGATCGGGGAAGACCATCCGGTGCGCCTGATCTGGTCTTATGTCGAAGAGCTTGATCTGAGTGAGCTGGA
GAACCGGATCAAGGCCAGGGGCGACCGCCCCGGTCACCCCGCGACCTCGCCGCGGCTTTTGCTGGCGCTGTGGCTCTCAGCCACCAGCGAGGGCGTCGGC
AGCGCGCGAGCATTGGAGCGACTGTGCGAGAGCCACGATGCCTATCGTTGGCTGTGCGGCGGGGTGTCGGTGAACTATCACATGCTGGCGGACTTCCGGG
TCGGTTGCGCCGACCTGCTGGACCGGCTGCTCAGCGAGCATCTGGCGGCGCTGGCGAAGGCTGGTCTCGTCAATCTGGCGACACTGGCGCAGGACGGGGT
GCGGGTCCGGGCCAGCGCGGGAGCCGCCTCGTTCCGGCGCGAGGCGACACTCGAGCGGCATCTGGCCCTGGCTGAGACGGTGGTGGAAGACCTCAAGCGC
GAAGTCGACGTGCGCTCTGACGCCAGCAATCAGCGCGCCCGGGCAGCCAAGGAGCGAGCCGCGGAGGAACGCAGCGCGCGCGTGAAAGCGGCGCAGGCGG
CGCTTGCCGAGATCAAGCAGCAGCGCAAGGAACGCGAGAGCAAGCAAGGCAATGGCAAGACGCCGAAGGAGCCGCGCGCGTCGACGACGGACGCCGATGC
ACGGGTCATGAAGATGGCGGATGGCGGCTTCCGCCCAGCCTACAACGTGCAGGTGACGAGTGCGGCCGGCGAGCAGTTCGTCACTGACGTTAAGGTATGC
AACACGGGGTCCGACCGCGGGCTGATGCGGCCCATGCTGGAGCGGCAGCGCACGCGCCCTGGCGGCCTGCCCAAAGACCATCTCGTCGATGGCGGCTTTG
GCAGTGCGGAAGACATCGAGTGGGCGCATGCCGAGGGCATAGAGGTTTTTTGCCCGCCCACTCAATCCAAGCACGGCACCGACCCCTACCTGCCGCGACG
CGGCGACGGCGCGGGGGTACTGGCTTGGCGTGCGCGGATGGCGAGCAAAGAGGGCAAGGCCCGGTACAAGCCCCGTTCGATATGCGAGTGCATCCATGCC
CGCTGGCGCAACTGGAACCTACGGCAATTGACCGTGCGCGGGATCGAAAAGGTCCGCGCCGTCGTGCTCTGGTACGCCCTCACCAACAACATCCTGCAAG
GCAACCGCCTCCGCAGCGCATAAACGAGAGCTCATCGACGAACTCAGACCCGCCATTTACCGCGACAAGAAACTCCACTCCGTTCCGAACAAGTAAAAGC
GTCACAAGCTC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1329 bp442 aa951423+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MAADELFGDLPAQSKPEADAAPLGAPRLREPQRDQIALRAVDIESLIGEDHPVRLIWSYVEELDLSELENRIKARGDRPGHPATSPRLLLALWLSATSEG
VGSARALERLCESHDAYRWLCGGVSVNYHMLADFRVGCADLLDRLLSEHLAALAKAGLVNLATLAQDGVRVRASAGAASFRREATLERHLALAETVVEDL
KREVDVRSDASNQRARAAKERAAEERSARVKAAQAALAEIKQQRKERESKQGNGKTPKEPRASTTDADARVMKMADGGFRPAYNVQVTSAAGEQFVTDVK
VCNTGSDRGLMRPMLERQRTRPGGLPKDHLVDGGFGSAEDIEWAHAEGIEVFCPPTQSKHGTDPYLPRRGDGAGVLAWRARMASKEGKARYKPRSICECI
HARWRNWNLRQLTVRGIEKVRAVVLWYALTNNILQGNRLRSA

 

Blast result :
Comments
ISBrsp9 is 82% aa similar to ISBrsp2.
References
1] ISfinder annotation (2016)
2] VanInsberghe,D.S., Maas,K.R., Cardenas,E., Strachan,C.R., Hallam,S.J. and Mohn,W. (2015) ISME J Nov;9(11):2435-41.