ISBrsp9
- Family IS1182
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
JYMR01000040 | ND | Bradyrhizobium sp. | Bradyrhizobium sp. LTSP849 Bradyrhizobium sp. LTSP857 |
DNA section
IS Length : 1511 bp
Ends
IR Length : 12/16
IRL : GAGCGTGTGATTTTTTGGCAGCGTGCCAGGTAAATCTGTCCGAATGCCGG
IRR : GAGCTTGTGACGCTTTTACTTGTTCGGAACGGAGTGGAGTTTCTTGTCGC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
CGGCCACC | TCA | GGATGACGGTGATGG | 3 |
DNA sequence
GAGCGTGTGATTTTTTGGCAGCGTGCCAGGTAAATCTGTCCGAATGCCGGTGGCATGTGATTCTCTGGCGATGATGGATTGGCGGGAGGCGAAGATGGCT
GCCGATGAATTGTTCGGTGATCTGCCGGCGCAATCGAAGCCTGAAGCCGACGCGGCGCCGCTCGGCGCGCCACGGCTGCGTGAGCCACAGCGCGACCAGA
TCGCGTTGCGAGCGGTGGATATCGAGAGCCTGATCGGGGAAGACCATCCGGTGCGCCTGATCTGGTCTTATGTCGAAGAGCTTGATCTGAGTGAGCTGGA
GAACCGGATCAAGGCCAGGGGCGACCGCCCCGGTCACCCCGCGACCTCGCCGCGGCTTTTGCTGGCGCTGTGGCTCTCAGCCACCAGCGAGGGCGTCGGC
AGCGCGCGAGCATTGGAGCGACTGTGCGAGAGCCACGATGCCTATCGTTGGCTGTGCGGCGGGGTGTCGGTGAACTATCACATGCTGGCGGACTTCCGGG
TCGGTTGCGCCGACCTGCTGGACCGGCTGCTCAGCGAGCATCTGGCGGCGCTGGCGAAGGCTGGTCTCGTCAATCTGGCGACACTGGCGCAGGACGGGGT
GCGGGTCCGGGCCAGCGCGGGAGCCGCCTCGTTCCGGCGCGAGGCGACACTCGAGCGGCATCTGGCCCTGGCTGAGACGGTGGTGGAAGACCTCAAGCGC
GAAGTCGACGTGCGCTCTGACGCCAGCAATCAGCGCGCCCGGGCAGCCAAGGAGCGAGCCGCGGAGGAACGCAGCGCGCGCGTGAAAGCGGCGCAGGCGG
CGCTTGCCGAGATCAAGCAGCAGCGCAAGGAACGCGAGAGCAAGCAAGGCAATGGCAAGACGCCGAAGGAGCCGCGCGCGTCGACGACGGACGCCGATGC
ACGGGTCATGAAGATGGCGGATGGCGGCTTCCGCCCAGCCTACAACGTGCAGGTGACGAGTGCGGCCGGCGAGCAGTTCGTCACTGACGTTAAGGTATGC
AACACGGGGTCCGACCGCGGGCTGATGCGGCCCATGCTGGAGCGGCAGCGCACGCGCCCTGGCGGCCTGCCCAAAGACCATCTCGTCGATGGCGGCTTTG
GCAGTGCGGAAGACATCGAGTGGGCGCATGCCGAGGGCATAGAGGTTTTTTGCCCGCCCACTCAATCCAAGCACGGCACCGACCCCTACCTGCCGCGACG
CGGCGACGGCGCGGGGGTACTGGCTTGGCGTGCGCGGATGGCGAGCAAAGAGGGCAAGGCCCGGTACAAGCCCCGTTCGATATGCGAGTGCATCCATGCC
CGCTGGCGCAACTGGAACCTACGGCAATTGACCGTGCGCGGGATCGAAAAGGTCCGCGCCGTCGTGCTCTGGTACGCCCTCACCAACAACATCCTGCAAG
GCAACCGCCTCCGCAGCGCATAAACGAGAGCTCATCGACGAACTCAGACCCGCCATTTACCGCGACAAGAAACTCCACTCCGTTCCGAACAAGTAAAAGC
GTCACAAGCTC
GCCGATGAATTGTTCGGTGATCTGCCGGCGCAATCGAAGCCTGAAGCCGACGCGGCGCCGCTCGGCGCGCCACGGCTGCGTGAGCCACAGCGCGACCAGA
TCGCGTTGCGAGCGGTGGATATCGAGAGCCTGATCGGGGAAGACCATCCGGTGCGCCTGATCTGGTCTTATGTCGAAGAGCTTGATCTGAGTGAGCTGGA
GAACCGGATCAAGGCCAGGGGCGACCGCCCCGGTCACCCCGCGACCTCGCCGCGGCTTTTGCTGGCGCTGTGGCTCTCAGCCACCAGCGAGGGCGTCGGC
AGCGCGCGAGCATTGGAGCGACTGTGCGAGAGCCACGATGCCTATCGTTGGCTGTGCGGCGGGGTGTCGGTGAACTATCACATGCTGGCGGACTTCCGGG
TCGGTTGCGCCGACCTGCTGGACCGGCTGCTCAGCGAGCATCTGGCGGCGCTGGCGAAGGCTGGTCTCGTCAATCTGGCGACACTGGCGCAGGACGGGGT
GCGGGTCCGGGCCAGCGCGGGAGCCGCCTCGTTCCGGCGCGAGGCGACACTCGAGCGGCATCTGGCCCTGGCTGAGACGGTGGTGGAAGACCTCAAGCGC
GAAGTCGACGTGCGCTCTGACGCCAGCAATCAGCGCGCCCGGGCAGCCAAGGAGCGAGCCGCGGAGGAACGCAGCGCGCGCGTGAAAGCGGCGCAGGCGG
CGCTTGCCGAGATCAAGCAGCAGCGCAAGGAACGCGAGAGCAAGCAAGGCAATGGCAAGACGCCGAAGGAGCCGCGCGCGTCGACGACGGACGCCGATGC
ACGGGTCATGAAGATGGCGGATGGCGGCTTCCGCCCAGCCTACAACGTGCAGGTGACGAGTGCGGCCGGCGAGCAGTTCGTCACTGACGTTAAGGTATGC
AACACGGGGTCCGACCGCGGGCTGATGCGGCCCATGCTGGAGCGGCAGCGCACGCGCCCTGGCGGCCTGCCCAAAGACCATCTCGTCGATGGCGGCTTTG
GCAGTGCGGAAGACATCGAGTGGGCGCATGCCGAGGGCATAGAGGTTTTTTGCCCGCCCACTCAATCCAAGCACGGCACCGACCCCTACCTGCCGCGACG
CGGCGACGGCGCGGGGGTACTGGCTTGGCGTGCGCGGATGGCGAGCAAAGAGGGCAAGGCCCGGTACAAGCCCCGTTCGATATGCGAGTGCATCCATGCC
CGCTGGCGCAACTGGAACCTACGGCAATTGACCGTGCGCGGGATCGAAAAGGTCCGCGCCGTCGTGCTCTGGTACGCCCTCACCAACAACATCCTGCAAG
GCAACCGCCTCCGCAGCGCATAAACGAGAGCTCATCGACGAACTCAGACCCGCCATTTACCGCGACAAGAAACTCCACTCCGTTCCGAACAAGTAAAAGC
GTCACAAGCTC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1329 bp | 442 aa | 95 | 1423 | + | No |
Chemistry : DDE
ORF sequence :
MAADELFGDLPAQSKPEADAAPLGAPRLREPQRDQIALRAVDIESLIGEDHPVRLIWSYVEELDLSELENRIKARGDRPGHPATSPRLLLALWLSATSEG
VGSARALERLCESHDAYRWLCGGVSVNYHMLADFRVGCADLLDRLLSEHLAALAKAGLVNLATLAQDGVRVRASAGAASFRREATLERHLALAETVVEDL
KREVDVRSDASNQRARAAKERAAEERSARVKAAQAALAEIKQQRKERESKQGNGKTPKEPRASTTDADARVMKMADGGFRPAYNVQVTSAAGEQFVTDVK
VCNTGSDRGLMRPMLERQRTRPGGLPKDHLVDGGFGSAEDIEWAHAEGIEVFCPPTQSKHGTDPYLPRRGDGAGVLAWRARMASKEGKARYKPRSICECI
HARWRNWNLRQLTVRGIEKVRAVVLWYALTNNILQGNRLRSA
VGSARALERLCESHDAYRWLCGGVSVNYHMLADFRVGCADLLDRLLSEHLAALAKAGLVNLATLAQDGVRVRASAGAASFRREATLERHLALAETVVEDL
KREVDVRSDASNQRARAAKERAAEERSARVKAAQAALAEIKQQRKERESKQGNGKTPKEPRASTTDADARVMKMADGGFRPAYNVQVTSAAGEQFVTDVK
VCNTGSDRGLMRPMLERQRTRPGGLPKDHLVDGGFGSAEDIEWAHAEGIEVFCPPTQSKHGTDPYLPRRGDGAGVLAWRARMASKEGKARYKPRSICECI
HARWRNWNLRQLTVRGIEKVRAVVLWYALTNNILQGNRLRSA
Blast result :
Comments
ISBrsp9 is 82% aa similar to ISBrsp2.
References
1] ISfinder annotation (2016)
2] VanInsberghe,D.S., Maas,K.R., Cardenas,E., Strachan,C.R., Hallam,S.J. and Mohn,W. (2015) ISME J Nov;9(11):2435-41.
2] VanInsberghe,D.S., Maas,K.R., Cardenas,E., Strachan,C.R., Hallam,S.J. and Mohn,W. (2015) ISME J Nov;9(11):2435-41.