ISRpa10

  • Family IS1182
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
CP000463 ND Rhodopseudomonas palustris
Rhodopseudomonas palustris BisA53
DNA section
IS Length : 1500 bp

Ends


IR Length : 13/16

IRL : GAGCCCGTGAATCTTTCATTTTGGTTGGCATGTCTGATTTGGCGTGATTC
IRR : GAGCCTGTGAAGCTATTCGATCGGCGGCTTTCGGAGATGTGATGCGGTGC

Insertion site


Left flankDirect repeatRight flankDR Length
GCGCTGCGGGCGCGCACCTCAGGATGACGAATCAGTG3
CGCCGATCAGCGAGCACCTCAGGATGACGTTGTGCCC3
CAAGAAAGAGCGCGCACCTCAGGATGACGAGTTGGTG3

DNA sequence

GAGCCCGTGAATCTTTCATTTTGGTTGGCATGTCTGATTTGGCGTGATTCACTTTTGCAGCGATCAGGGAGTTGCTGCGATGGCCGATAAGGAATTGTTT
TCCGATCTTTCTGTTCAGCATTCGCCGAGGGCGTTGGACGCAGGGCGAGCGCGGCTGCGCGAGCCGGTGCGCGATCAGATCGAACTGCGGTCGGTGGACC
TCGACGCGCTGCTTGGCGCGGATCACCCCGCGCGGCTGATCTGGGACTATGTCAGCCGGATTGATCTGCAAGTGCTGGAACAGAAGGTGCGGGCGCGCGA
GCATACGCCGGGGCAGGCGCCGGCCAGTCCGCGACTGCTGCTGGCGCTGTGGCTTTATGCCACCAGCGAGGGCGTCGGCAGCGCCCGCGCGCTGGCGCGT
CTGTGCGACAATCACGACGCCTATCGCTGGCTGTGCGGCGGGGTGAGCGTCAACTATCATGGCCTAGCCGACTTCCGCACAGCGGAGCCGGAGCTGCTGG
ACCGGCTGCTGAGCGAGCACGTCGCCACCTTGTCCGCGGCAGGCGTCATCAGCCTCGACGAGATCACCCAGGACGGGGTGCGGGTGCGGGCCTCGGCCGG
GGCGGCCTCGTTCCGACGCAGCAAAACACTGCACAAGGAACTGAAGAAGGCGCAGCGGCGCGTCAAAGCGCTGCGGTTGGAATTGCACGACGATCCGGAC
GCCAGCAACCGCCGCATCCAGGCGGCTCAACAGCGGGCGGCGCGGGAGCGCGAGGCAAAGGTCAAGGCGGCGCTGGACCGGCTTGCGCAGATCGAAGCCG
AACGTGCCCGCCGCGGCCGGACCAACAAGAACCAGACCGCCAAGCAGAAAGAGCCGCGCGCCTCGACCACCGATCCCCAGGCGCGCGTCATGAAGATGGC
CGATGGCGGCTATCGGCCGGCGCATAATTGCCAGCTCGCCACCGTGGCGGATGGCCAGATCGTGGTCGCCGTCGATGTCGACGGCACCGGCTCCGACCAT
GGCCTGATGCGGCCGATGATCGAGCAGATCGAGCGGCGCCACGGCCGCCGGCCGAAGCGCTACCTCGTCGACGGCGGCTTCAACAAGAATGACGATACCG
AATGGGCCGCCGCACAGGGTGTCGCCGTCTACGGGCCGCCGGTGCGCAGCAAGCACGACAGCGATCCCTACGCGCCGCGCCGCGACGACGGCCCCGGCGT
CGCCGCCTGGCGCCGGCGCATGAAAAGTCCGCACGGCAAATCCGTTTACAAGCGCAGAACCGTGGGTGAATGCATCAATGCCCGGGTCCGGCAATGGGGC
TTCCGCCAGTTCGTCGTCCGCGGACACGACAAGGTCAGAGCACTGCTCGGCCTGTTCGCCCTCGCCAACAACATCCTGCAAGGCCATCGCCTCAGCCAGA
GCGCCGCGGCGTAGCCGATCAGCCACCAACCGCACGCCTGCGCAGCCATCGCACCGCATCACATCTCCGAAAGCCGCCGATCGAATAGCTTCACAGGCTC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1335 bp444 aa801414+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MADKELFSDLSVQHSPRALDAGRARLREPVRDQIELRSVDLDALLGADHPARLIWDYVSRIDLQVLEQKVRAREHTPGQAPASPRLLLALWLYATSEGVG
SARALARLCDNHDAYRWLCGGVSVNYHGLADFRTAEPELLDRLLSEHVATLSAAGVISLDEITQDGVRVRASAGAASFRRSKTLHKELKKAQRRVKALRL
ELHDDPDASNRRIQAAQQRAAREREAKVKAALDRLAQIEAERARRGRTNKNQTAKQKEPRASTTDPQARVMKMADGGYRPAHNCQLATVADGQIVVAVDV
DGTGSDHGLMRPMIEQIERRHGRRPKRYLVDGGFNKNDDTEWAAAQGVAVYGPPVRSKHDSDPYAPRRDDGPGVAAWRRRMKSPHGKSVYKRRTVGECIN
ARVRQWGFRQFVVRGHDKVRALLGLFALANNILQGHRLSQSAAA

 

Blast result :
Comments
ISRpa10 is 72% aa similar to ISBrsp2.
References
1] ISfinder annotation (2016)
2] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S., Chain,P., Malfatti,S., Shin,M., Vergez,L., Schmutz,J., Larimer,F., Land,M., Hauser,L., Pelletier,D.A., Kyrpides,N., Kim,E., Harwood,C.S., Oda,Y. and Richardson,P. (2006) Direct submission GenBank.