ISRpa10
- Family IS1182
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
CP000463 | ND | Rhodopseudomonas palustris | Rhodopseudomonas palustris BisA53 |
DNA section
IS Length : 1500 bp
Ends
IR Length : 13/16
IRL : GAGCCCGTGAATCTTTCATTTTGGTTGGCATGTCTGATTTGGCGTGATTC
IRR : GAGCCTGTGAAGCTATTCGATCGGCGGCTTTCGGAGATGTGATGCGGTGC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GCGCTGCGGGCGCGCACC | TCA | GGATGACGAATCAGTG | 3 |
CGCCGATCAGCGAGCACC | TCA | GGATGACGTTGTGCCC | 3 |
CAAGAAAGAGCGCGCACC | TCA | GGATGACGAGTTGGTG | 3 |
DNA sequence
GAGCCCGTGAATCTTTCATTTTGGTTGGCATGTCTGATTTGGCGTGATTCACTTTTGCAGCGATCAGGGAGTTGCTGCGATGGCCGATAAGGAATTGTTT
TCCGATCTTTCTGTTCAGCATTCGCCGAGGGCGTTGGACGCAGGGCGAGCGCGGCTGCGCGAGCCGGTGCGCGATCAGATCGAACTGCGGTCGGTGGACC
TCGACGCGCTGCTTGGCGCGGATCACCCCGCGCGGCTGATCTGGGACTATGTCAGCCGGATTGATCTGCAAGTGCTGGAACAGAAGGTGCGGGCGCGCGA
GCATACGCCGGGGCAGGCGCCGGCCAGTCCGCGACTGCTGCTGGCGCTGTGGCTTTATGCCACCAGCGAGGGCGTCGGCAGCGCCCGCGCGCTGGCGCGT
CTGTGCGACAATCACGACGCCTATCGCTGGCTGTGCGGCGGGGTGAGCGTCAACTATCATGGCCTAGCCGACTTCCGCACAGCGGAGCCGGAGCTGCTGG
ACCGGCTGCTGAGCGAGCACGTCGCCACCTTGTCCGCGGCAGGCGTCATCAGCCTCGACGAGATCACCCAGGACGGGGTGCGGGTGCGGGCCTCGGCCGG
GGCGGCCTCGTTCCGACGCAGCAAAACACTGCACAAGGAACTGAAGAAGGCGCAGCGGCGCGTCAAAGCGCTGCGGTTGGAATTGCACGACGATCCGGAC
GCCAGCAACCGCCGCATCCAGGCGGCTCAACAGCGGGCGGCGCGGGAGCGCGAGGCAAAGGTCAAGGCGGCGCTGGACCGGCTTGCGCAGATCGAAGCCG
AACGTGCCCGCCGCGGCCGGACCAACAAGAACCAGACCGCCAAGCAGAAAGAGCCGCGCGCCTCGACCACCGATCCCCAGGCGCGCGTCATGAAGATGGC
CGATGGCGGCTATCGGCCGGCGCATAATTGCCAGCTCGCCACCGTGGCGGATGGCCAGATCGTGGTCGCCGTCGATGTCGACGGCACCGGCTCCGACCAT
GGCCTGATGCGGCCGATGATCGAGCAGATCGAGCGGCGCCACGGCCGCCGGCCGAAGCGCTACCTCGTCGACGGCGGCTTCAACAAGAATGACGATACCG
AATGGGCCGCCGCACAGGGTGTCGCCGTCTACGGGCCGCCGGTGCGCAGCAAGCACGACAGCGATCCCTACGCGCCGCGCCGCGACGACGGCCCCGGCGT
CGCCGCCTGGCGCCGGCGCATGAAAAGTCCGCACGGCAAATCCGTTTACAAGCGCAGAACCGTGGGTGAATGCATCAATGCCCGGGTCCGGCAATGGGGC
TTCCGCCAGTTCGTCGTCCGCGGACACGACAAGGTCAGAGCACTGCTCGGCCTGTTCGCCCTCGCCAACAACATCCTGCAAGGCCATCGCCTCAGCCAGA
GCGCCGCGGCGTAGCCGATCAGCCACCAACCGCACGCCTGCGCAGCCATCGCACCGCATCACATCTCCGAAAGCCGCCGATCGAATAGCTTCACAGGCTC
TCCGATCTTTCTGTTCAGCATTCGCCGAGGGCGTTGGACGCAGGGCGAGCGCGGCTGCGCGAGCCGGTGCGCGATCAGATCGAACTGCGGTCGGTGGACC
TCGACGCGCTGCTTGGCGCGGATCACCCCGCGCGGCTGATCTGGGACTATGTCAGCCGGATTGATCTGCAAGTGCTGGAACAGAAGGTGCGGGCGCGCGA
GCATACGCCGGGGCAGGCGCCGGCCAGTCCGCGACTGCTGCTGGCGCTGTGGCTTTATGCCACCAGCGAGGGCGTCGGCAGCGCCCGCGCGCTGGCGCGT
CTGTGCGACAATCACGACGCCTATCGCTGGCTGTGCGGCGGGGTGAGCGTCAACTATCATGGCCTAGCCGACTTCCGCACAGCGGAGCCGGAGCTGCTGG
ACCGGCTGCTGAGCGAGCACGTCGCCACCTTGTCCGCGGCAGGCGTCATCAGCCTCGACGAGATCACCCAGGACGGGGTGCGGGTGCGGGCCTCGGCCGG
GGCGGCCTCGTTCCGACGCAGCAAAACACTGCACAAGGAACTGAAGAAGGCGCAGCGGCGCGTCAAAGCGCTGCGGTTGGAATTGCACGACGATCCGGAC
GCCAGCAACCGCCGCATCCAGGCGGCTCAACAGCGGGCGGCGCGGGAGCGCGAGGCAAAGGTCAAGGCGGCGCTGGACCGGCTTGCGCAGATCGAAGCCG
AACGTGCCCGCCGCGGCCGGACCAACAAGAACCAGACCGCCAAGCAGAAAGAGCCGCGCGCCTCGACCACCGATCCCCAGGCGCGCGTCATGAAGATGGC
CGATGGCGGCTATCGGCCGGCGCATAATTGCCAGCTCGCCACCGTGGCGGATGGCCAGATCGTGGTCGCCGTCGATGTCGACGGCACCGGCTCCGACCAT
GGCCTGATGCGGCCGATGATCGAGCAGATCGAGCGGCGCCACGGCCGCCGGCCGAAGCGCTACCTCGTCGACGGCGGCTTCAACAAGAATGACGATACCG
AATGGGCCGCCGCACAGGGTGTCGCCGTCTACGGGCCGCCGGTGCGCAGCAAGCACGACAGCGATCCCTACGCGCCGCGCCGCGACGACGGCCCCGGCGT
CGCCGCCTGGCGCCGGCGCATGAAAAGTCCGCACGGCAAATCCGTTTACAAGCGCAGAACCGTGGGTGAATGCATCAATGCCCGGGTCCGGCAATGGGGC
TTCCGCCAGTTCGTCGTCCGCGGACACGACAAGGTCAGAGCACTGCTCGGCCTGTTCGCCCTCGCCAACAACATCCTGCAAGGCCATCGCCTCAGCCAGA
GCGCCGCGGCGTAGCCGATCAGCCACCAACCGCACGCCTGCGCAGCCATCGCACCGCATCACATCTCCGAAAGCCGCCGATCGAATAGCTTCACAGGCTC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1335 bp | 444 aa | 80 | 1414 | + | No |
Chemistry : DDE
ORF sequence :
MADKELFSDLSVQHSPRALDAGRARLREPVRDQIELRSVDLDALLGADHPARLIWDYVSRIDLQVLEQKVRAREHTPGQAPASPRLLLALWLYATSEGVG
SARALARLCDNHDAYRWLCGGVSVNYHGLADFRTAEPELLDRLLSEHVATLSAAGVISLDEITQDGVRVRASAGAASFRRSKTLHKELKKAQRRVKALRL
ELHDDPDASNRRIQAAQQRAAREREAKVKAALDRLAQIEAERARRGRTNKNQTAKQKEPRASTTDPQARVMKMADGGYRPAHNCQLATVADGQIVVAVDV
DGTGSDHGLMRPMIEQIERRHGRRPKRYLVDGGFNKNDDTEWAAAQGVAVYGPPVRSKHDSDPYAPRRDDGPGVAAWRRRMKSPHGKSVYKRRTVGECIN
ARVRQWGFRQFVVRGHDKVRALLGLFALANNILQGHRLSQSAAA
SARALARLCDNHDAYRWLCGGVSVNYHGLADFRTAEPELLDRLLSEHVATLSAAGVISLDEITQDGVRVRASAGAASFRRSKTLHKELKKAQRRVKALRL
ELHDDPDASNRRIQAAQQRAAREREAKVKAALDRLAQIEAERARRGRTNKNQTAKQKEPRASTTDPQARVMKMADGGYRPAHNCQLATVADGQIVVAVDV
DGTGSDHGLMRPMIEQIERRHGRRPKRYLVDGGFNKNDDTEWAAAQGVAVYGPPVRSKHDSDPYAPRRDDGPGVAAWRRRMKSPHGKSVYKRRTVGECIN
ARVRQWGFRQFVVRGHDKVRALLGLFALANNILQGHRLSQSAAA
Blast result :
Comments
ISRpa10 is 72% aa similar to ISBrsp2.
References
1] ISfinder annotation (2016)
2] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S., Chain,P., Malfatti,S., Shin,M., Vergez,L., Schmutz,J., Larimer,F., Land,M., Hauser,L., Pelletier,D.A., Kyrpides,N., Kim,E., Harwood,C.S., Oda,Y. and Richardson,P. (2006) Direct submission GenBank.
2] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S., Chain,P., Malfatti,S., Shin,M., Vergez,L., Schmutz,J., Larimer,F., Land,M., Hauser,L., Pelletier,D.A., Kyrpides,N., Kim,E., Harwood,C.S., Oda,Y. and Richardson,P. (2006) Direct submission GenBank.