ISBrsp8

  • Family IS1182
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
LUUB01000075 ND Bradyrhizobium sp.
Bradyrhizobium sp. BR 10245
DNA section
IS Length : 1518 bp

Ends


IR Length : 13/16

IRL : GAGGCTGTGAATCTTTCATTTCGGCTGGGCGGATGTAGCGGAGATCAAGG
IRR : GAGCCTGTGAAGCTATTGGATCTGCGGAGATTGGCCGGCAGGGAAATGGC

Insertion site


Left flankDirect repeatRight flankDR Length
GCTAACCCACCCTACGGTTTTCCGCCGCG3
CGTGGGTTACGCTTCGCTAACCCACCCTACG3
GCTAACCCACCCTACGAAGATGGATCTGCTTCACGTCCCGCA3
GCTAACCCACCCTACGAGCTACGAGCTCATCGCTAGGCAATC3
GTGGGTTACGCTTCCGCTAACCCACCCTACG3
TGGATTACGCCTTCGGCTAACCCACCCTACG3
TGGGTTACGCCTTCGGCTAACCCACCCTACG3
GGTGGGTTACGCTGCGCTAACCCACCCTACG3
GCTAACCCACCCTACGCTTTCAGCGCGTGTACCGCGCCTTCC3
GCTAACCCACCCTACGATCTGCGACTACGATCCGCTCACCGC3
TGGGTTACGCCTTCGGCTAACCCACCCTACG3
GCTAACCCACCCTACGATCACGCTTGAGCGGAGCGCTCTTGC3

DNA sequence

GAGGCTGTGAATCTTTCATTTCGGCTGGGCGGATGTAGCGGAGATCAAGGCCGTCGTGATTCTCTGTGTGCCTTGATTCGGCGGAGGGGATGATGGCTGA
CGAAGAGCTATTTGGAGAGCTGCCGGAACAGGCGAAGCCGCGAGCAGGTGCAGAGCCGGTTGGAGCGCCGCGGCTGCGCGAGCCGATGCGTGACCAGATC
GAACTGCGTGCCGTGGATATCGAGAGCCTGATCGGGCAAGAGCATCCGGCGCGCGTGATCTGGGCCTATGTTGAGGGGCTGGACCTGAGCGAGCTTGAGG
ATCGGGTCAAGGCGCGGGAGAATACGCCCGGTCATCCGCCGCCATCGCCACGACTGCTGCTGGCGCTTTGGCTTTACGCCACGAGCGATGGCGTGGGCAG
CGCGCGTGCGCTGGACCGCCTCTGCGAGAGCCATGACGTCTATCGCTGGCTATGTGGCGGAGTGTCGATGAACTATCACACGCTGTCGGACTTCCGGGTC
GGCTGTGCCGACCTGCTCGACCGCCTGCTGAGCGAGCATCTGGCGGCGCTGAGCAAGGCGGGGCTGGTCGATCTGGAGAAGTTGACCCAGGACGGGGTGC
GGATACGGGCCAATGCGGGGACCGGATCGTTCCGGCGGGAGGCGACGCTGGATCGGCAGATGGCGCAGGCCCAGGCTGTGGTGGAGGAGCTCAAGCGCGA
GGTCGATGCGGATCCGGAAGCCAGCAATCGGCGCATTCGGGCCGCGAGGGAGCGCGCGGCGCGCGAACGCAGCGAGCGGGTGCAGGCGGCGCAAGCGGCG
CTGGCCGAGATCAAGCGCAAGCGAAAGCAGCTCGACGAGAAGGGCGGCAATGGCAAAAAGCCGAAGGAGGCGCGGGCCTCCACCACCGACCCGCAGGCGC
GGGTGATGAAGATGGCGGATGCCGGCTTTCGTCCAGCCTACAACGTGCAGGTGGCCAGCGCGGCGGGCGAGCTGATCGTGGTCACGGTCGACGTCGACAA
CAATGGATCGGATCGCGGCCTGATGCGGCCGATGCTGGAACGAACGCGATCACTGCTGGGCCGCTTTCCCCGCCGCCACCTCGTCGATGGCGGTTTCTGC
AGCGCCGAGGATATCGAGTGGGCGCATAGCGAAGGCATCGACATCTACTGTCCACCAACGCAGTCCAGGAGCGGTGTCGATCCTTATTTGCCCCGGCATG
GCGACGGTCCGGGCGTGTTGGCCTGGCGTGCTCGCATGGCCAGCGAAGACGGCAAAGCTCAGTACCGAGCCCGTACGATCTGCGAATGCATACATGCCCG
CTGGCGCAACTGGGACCTGCGGCAATTGACCGTCCGCGGTATCGAAAAGGTCCGCGCCGTCGTCCTCTGGTACGCGCTCACCAACAACATCCTGCAGGGC
CACCATCTCGCCAAACCATAGTGGCACCCACAGTCCGCCTCGTCACAGCCCTCGGATCAACTCAACTCGCCATTTCCCTGCCGGCCAATCTCCGCAGATC
CAATAGCTTCACAGGCTC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1332 bp443 aa901421+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MMADEELFGELPEQAKPRAGAEPVGAPRLREPMRDQIELRAVDIESLIGQEHPARVIWAYVEGLDLSELEDRVKARENTPGHPPPSPRLLLALWLYATSD
GVGSARALDRLCESHDVYRWLCGGVSMNYHTLSDFRVGCADLLDRLLSEHLAALSKAGLVDLEKLTQDGVRIRANAGTGSFRREATLDRQMAQAQAVVEE
LKREVDADPEASNRRIRAARERAARERSERVQAAQAALAEIKRKRKQLDEKGGNGKKPKEARASTTDPQARVMKMADAGFRPAYNVQVASAAGELIVVTV
DVDNNGSDRGLMRPMLERTRSLLGRFPRRHLVDGGFCSAEDIEWAHSEGIDIYCPPTQSRSGVDPYLPRHGDGPGVLAWRARMASEDGKAQYRARTICEC
IHARWRNWDLRQLTVRGIEKVRAVVLWYALTNNILQGHHLAKP

 

Blast result :
Comments
ISBrsp8 is 88% aa similar to ISBrsp2.
References
1] ISfinder annotation (2016)
2] Simoes-Araujo,J.L. Sr., Barauna,A.C., Silva,K. and Zilli,J.E. (2016) Direct submission GenBank.