ISBrsp8
- Family IS1182
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
LUUB01000075 | ND | Bradyrhizobium sp. | Bradyrhizobium sp. BR 10245 |
DNA section
IS Length : 1518 bp
Ends
IR Length : 13/16
IRL : GAGGCTGTGAATCTTTCATTTCGGCTGGGCGGATGTAGCGGAGATCAAGG
IRR : GAGCCTGTGAAGCTATTGGATCTGCGGAGATTGGCCGGCAGGGAAATGGC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GCTAACCCACCC | TAC | GGTTTTCCGCCGCG | 3 |
CGTGGGTTACGCTTCGCTAACCCACCC | TAC | G | 3 |
GCTAACCCACCC | TAC | GAAGATGGATCTGCTTCACGTCCCGCA | 3 |
GCTAACCCACCC | TAC | GAGCTACGAGCTCATCGCTAGGCAATC | 3 |
GTGGGTTACGCTTCCGCTAACCCACCC | TAC | G | 3 |
TGGATTACGCCTTCGGCTAACCCACCC | TAC | G | 3 |
TGGGTTACGCCTTCGGCTAACCCACCC | TAC | G | 3 |
GGTGGGTTACGCTGCGCTAACCCACCC | TAC | G | 3 |
GCTAACCCACCC | TAC | GCTTTCAGCGCGTGTACCGCGCCTTCC | 3 |
GCTAACCCACCC | TAC | GATCTGCGACTACGATCCGCTCACCGC | 3 |
TGGGTTACGCCTTCGGCTAACCCACCC | TAC | G | 3 |
GCTAACCCACCC | TAC | GATCACGCTTGAGCGGAGCGCTCTTGC | 3 |
DNA sequence
GAGGCTGTGAATCTTTCATTTCGGCTGGGCGGATGTAGCGGAGATCAAGGCCGTCGTGATTCTCTGTGTGCCTTGATTCGGCGGAGGGGATGATGGCTGA
CGAAGAGCTATTTGGAGAGCTGCCGGAACAGGCGAAGCCGCGAGCAGGTGCAGAGCCGGTTGGAGCGCCGCGGCTGCGCGAGCCGATGCGTGACCAGATC
GAACTGCGTGCCGTGGATATCGAGAGCCTGATCGGGCAAGAGCATCCGGCGCGCGTGATCTGGGCCTATGTTGAGGGGCTGGACCTGAGCGAGCTTGAGG
ATCGGGTCAAGGCGCGGGAGAATACGCCCGGTCATCCGCCGCCATCGCCACGACTGCTGCTGGCGCTTTGGCTTTACGCCACGAGCGATGGCGTGGGCAG
CGCGCGTGCGCTGGACCGCCTCTGCGAGAGCCATGACGTCTATCGCTGGCTATGTGGCGGAGTGTCGATGAACTATCACACGCTGTCGGACTTCCGGGTC
GGCTGTGCCGACCTGCTCGACCGCCTGCTGAGCGAGCATCTGGCGGCGCTGAGCAAGGCGGGGCTGGTCGATCTGGAGAAGTTGACCCAGGACGGGGTGC
GGATACGGGCCAATGCGGGGACCGGATCGTTCCGGCGGGAGGCGACGCTGGATCGGCAGATGGCGCAGGCCCAGGCTGTGGTGGAGGAGCTCAAGCGCGA
GGTCGATGCGGATCCGGAAGCCAGCAATCGGCGCATTCGGGCCGCGAGGGAGCGCGCGGCGCGCGAACGCAGCGAGCGGGTGCAGGCGGCGCAAGCGGCG
CTGGCCGAGATCAAGCGCAAGCGAAAGCAGCTCGACGAGAAGGGCGGCAATGGCAAAAAGCCGAAGGAGGCGCGGGCCTCCACCACCGACCCGCAGGCGC
GGGTGATGAAGATGGCGGATGCCGGCTTTCGTCCAGCCTACAACGTGCAGGTGGCCAGCGCGGCGGGCGAGCTGATCGTGGTCACGGTCGACGTCGACAA
CAATGGATCGGATCGCGGCCTGATGCGGCCGATGCTGGAACGAACGCGATCACTGCTGGGCCGCTTTCCCCGCCGCCACCTCGTCGATGGCGGTTTCTGC
AGCGCCGAGGATATCGAGTGGGCGCATAGCGAAGGCATCGACATCTACTGTCCACCAACGCAGTCCAGGAGCGGTGTCGATCCTTATTTGCCCCGGCATG
GCGACGGTCCGGGCGTGTTGGCCTGGCGTGCTCGCATGGCCAGCGAAGACGGCAAAGCTCAGTACCGAGCCCGTACGATCTGCGAATGCATACATGCCCG
CTGGCGCAACTGGGACCTGCGGCAATTGACCGTCCGCGGTATCGAAAAGGTCCGCGCCGTCGTCCTCTGGTACGCGCTCACCAACAACATCCTGCAGGGC
CACCATCTCGCCAAACCATAGTGGCACCCACAGTCCGCCTCGTCACAGCCCTCGGATCAACTCAACTCGCCATTTCCCTGCCGGCCAATCTCCGCAGATC
CAATAGCTTCACAGGCTC
CGAAGAGCTATTTGGAGAGCTGCCGGAACAGGCGAAGCCGCGAGCAGGTGCAGAGCCGGTTGGAGCGCCGCGGCTGCGCGAGCCGATGCGTGACCAGATC
GAACTGCGTGCCGTGGATATCGAGAGCCTGATCGGGCAAGAGCATCCGGCGCGCGTGATCTGGGCCTATGTTGAGGGGCTGGACCTGAGCGAGCTTGAGG
ATCGGGTCAAGGCGCGGGAGAATACGCCCGGTCATCCGCCGCCATCGCCACGACTGCTGCTGGCGCTTTGGCTTTACGCCACGAGCGATGGCGTGGGCAG
CGCGCGTGCGCTGGACCGCCTCTGCGAGAGCCATGACGTCTATCGCTGGCTATGTGGCGGAGTGTCGATGAACTATCACACGCTGTCGGACTTCCGGGTC
GGCTGTGCCGACCTGCTCGACCGCCTGCTGAGCGAGCATCTGGCGGCGCTGAGCAAGGCGGGGCTGGTCGATCTGGAGAAGTTGACCCAGGACGGGGTGC
GGATACGGGCCAATGCGGGGACCGGATCGTTCCGGCGGGAGGCGACGCTGGATCGGCAGATGGCGCAGGCCCAGGCTGTGGTGGAGGAGCTCAAGCGCGA
GGTCGATGCGGATCCGGAAGCCAGCAATCGGCGCATTCGGGCCGCGAGGGAGCGCGCGGCGCGCGAACGCAGCGAGCGGGTGCAGGCGGCGCAAGCGGCG
CTGGCCGAGATCAAGCGCAAGCGAAAGCAGCTCGACGAGAAGGGCGGCAATGGCAAAAAGCCGAAGGAGGCGCGGGCCTCCACCACCGACCCGCAGGCGC
GGGTGATGAAGATGGCGGATGCCGGCTTTCGTCCAGCCTACAACGTGCAGGTGGCCAGCGCGGCGGGCGAGCTGATCGTGGTCACGGTCGACGTCGACAA
CAATGGATCGGATCGCGGCCTGATGCGGCCGATGCTGGAACGAACGCGATCACTGCTGGGCCGCTTTCCCCGCCGCCACCTCGTCGATGGCGGTTTCTGC
AGCGCCGAGGATATCGAGTGGGCGCATAGCGAAGGCATCGACATCTACTGTCCACCAACGCAGTCCAGGAGCGGTGTCGATCCTTATTTGCCCCGGCATG
GCGACGGTCCGGGCGTGTTGGCCTGGCGTGCTCGCATGGCCAGCGAAGACGGCAAAGCTCAGTACCGAGCCCGTACGATCTGCGAATGCATACATGCCCG
CTGGCGCAACTGGGACCTGCGGCAATTGACCGTCCGCGGTATCGAAAAGGTCCGCGCCGTCGTCCTCTGGTACGCGCTCACCAACAACATCCTGCAGGGC
CACCATCTCGCCAAACCATAGTGGCACCCACAGTCCGCCTCGTCACAGCCCTCGGATCAACTCAACTCGCCATTTCCCTGCCGGCCAATCTCCGCAGATC
CAATAGCTTCACAGGCTC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1332 bp | 443 aa | 90 | 1421 | + | No |
Chemistry : DDE
ORF sequence :
MMADEELFGELPEQAKPRAGAEPVGAPRLREPMRDQIELRAVDIESLIGQEHPARVIWAYVEGLDLSELEDRVKARENTPGHPPPSPRLLLALWLYATSD
GVGSARALDRLCESHDVYRWLCGGVSMNYHTLSDFRVGCADLLDRLLSEHLAALSKAGLVDLEKLTQDGVRIRANAGTGSFRREATLDRQMAQAQAVVEE
LKREVDADPEASNRRIRAARERAARERSERVQAAQAALAEIKRKRKQLDEKGGNGKKPKEARASTTDPQARVMKMADAGFRPAYNVQVASAAGELIVVTV
DVDNNGSDRGLMRPMLERTRSLLGRFPRRHLVDGGFCSAEDIEWAHSEGIDIYCPPTQSRSGVDPYLPRHGDGPGVLAWRARMASEDGKAQYRARTICEC
IHARWRNWDLRQLTVRGIEKVRAVVLWYALTNNILQGHHLAKP
GVGSARALDRLCESHDVYRWLCGGVSMNYHTLSDFRVGCADLLDRLLSEHLAALSKAGLVDLEKLTQDGVRIRANAGTGSFRREATLDRQMAQAQAVVEE
LKREVDADPEASNRRIRAARERAARERSERVQAAQAALAEIKRKRKQLDEKGGNGKKPKEARASTTDPQARVMKMADAGFRPAYNVQVASAAGELIVVTV
DVDNNGSDRGLMRPMLERTRSLLGRFPRRHLVDGGFCSAEDIEWAHSEGIDIYCPPTQSRSGVDPYLPRHGDGPGVLAWRARMASEDGKAQYRARTICEC
IHARWRNWDLRQLTVRGIEKVRAVVLWYALTNNILQGHHLAKP
Blast result :
Comments
ISBrsp8 is 88% aa similar to ISBrsp2.
References
1] ISfinder annotation (2016)
2] Simoes-Araujo,J.L. Sr., Barauna,A.C., Silva,K. and Zilli,J.E. (2016) Direct submission GenBank.
2] Simoes-Araujo,J.L. Sr., Barauna,A.C., Silva,K. and Zilli,J.E. (2016) Direct submission GenBank.