ISThsp22

  • Family IS1182
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
LK931654 ND Thiomonas sp.
Thiomonas sp. CB2
DNA section
IS Length : 1725 bp

Ends


IR Length : 16/22

IRL : GAGTCTGTGAACATTTGATTTTGATGGCACGAATGCTGCGTGTCTTTGGG
IRR : GTGCCTGTGAACGTTTCAACTTCCGCGATGATCTCAACGCATCGAGACGC

Insertion site


Left flankDirect repeatRight flankDR Length
CCAAGGCGCTCAGCCGCCCGTTGATCTCACTCGGCATGGCCGGCAAATCCCA3

DNA sequence

GAGTCTGTGAACATTTGATTTTGATGGCACGAATGCTGCGTGTCTTTGGGCATGAGCAATATCACGAACGAAGCGGGAACGAACGGGCACACGGGTGCCC
TGTTTGAGGGCTTGGCGGTCCCTGCGGACAGTGCGGCTGCTCTGAAGCGCAGTAAGCCCCAAGGGACGCCGCGGGAGCAAAGCGCGATGCGCAACCAAGT
CGAATGGCGGGCCTGCGATCTTGACTCGACGCTGCCGGCCGATCATCAGGCCCGTGCCGTCTGGGCCTTTGTGCAGTCGCTCGATCTTCAAGCCCTGCAC
GGACAGATCCGCGCCGTTGAGGGCGGCGTCGGACGCGCGCCCATTGATCCGGCCATTCTGATGGGTCTGTGGCTGTACGCGACGCTGGACGGTGTGGGCT
CGGCGCGCGAACTGGGTCGGCTGTGCGACAGGGATGACGCCTACCGCTGGCTGTGCGGCGGGGTGGGCGTGAACCACCACACGCTGGGCGATTTCCGGGT
CGAACATGCGCAGTGGTTGGACGGCCAACTCACCCGCAGCGTGGCGGGTCTGCTGTCGCAGGGGCTTGTCAGCATGAACCGGGTGGCCCACGACGGCATG
CGCGTGCGCGCCCAGGCGGGTGCGGCCAGCTTCCGGCGCCGCGAGACCTTGGAGCAACTCATGCAAGACGCGCAGGCCCAGGTGCAAGCACTCAAGCAGG
AGGTGGGCGACGATCCGGGGGCCGGCACCCGCCGCGTGCGTGCGGCGCGCCAGCGTGCGGCCACCGAGCGCGAACAACGCATTGCGCGCGCCATCGAGGC
GATGGCCGAGATCGACAAGAGCCTCTCGGGCAAGGGCAAGAAGGCCCGAGCCAACAGCACGCAGGCCGACAGGGCACAAGACGAGCCGGCGCAACCCCAG
GCGGCCCCGACCACGCAACCCGTGGGCGAGCAATGCGCCGAGGAACAACCCAACGAGGCCAGGCGCGCCAAGAAACCCAAGCAGCCGCGCGTGAGCACCA
CCGACCACGAGGCGCGTGTGATGAAGATGGCCGATGGGGGCTTTCGCCCGGCGTTCAATGCGCAACTCGCGGTGGACACCGCCACCCTGATCATCACCGG
CGTGGACCTCATCAACTCGGGCAGCGACATGAACCAGATGCTGCCCATGCACGCGCAGCACCAGGACCGCTATGGTCAAGTGCCCGCGCAGTGGTTGACC
GATGGGGGCTTTGCCCAGCACGCGCACATCGAGGAACTCGATGCGCGCGCCACCCAAGCGTTCGCGCCTGTGGTGGCGCCCAAGGCCCCGCAACGTGATC
GCTATGCTGCGCTGCCCGGCGACAGCCAGGCGCTGGGCCAGTGGCGCCAGCGCATGGGCACCGAGGCGGCCAAGCGAATCTACAAGGAACGTGCTGCCAG
CATCGAGTGCGCCAACGCCCGTTTGCGCAACCGCGGCTTGCAGCGCTTGAACGTGCGCGGAATGATCAAGGCGCGCGCCGTGTTGCTGTGGCATGCGCTG
GCCCACAATTTGAAGCGGATGATGGCGCTGAACTTCGCGTTCGCGCCCTGAGAGGCCGGCAAGGGTCGGCGCGGGCTGCGTTTGCGCTCCACCAGGCCCT
GCATCAACGCCAAGCTCGTCCCAACAAACAAACGGCGGCTCGAATCGACTCGTCGCGCCCGTCCGCAGCGCATGGGCGTCTCGATGCGTTGAGATCATCG
CGGAAGTTGAAACGTTCACAGGCAC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1500 bp499 aa521551+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MSNITNEAGTNGHTGALFEGLAVPADSAAALKRSKPQGTPREQSAMRNQVEWRACDLDSTLPADHQARAVWAFVQSLDLQALHGQIRAVEGGVGRAPIDP
AILMGLWLYATLDGVGSARELGRLCDRDDAYRWLCGGVGVNHHTLGDFRVEHAQWLDGQLTRSVAGLLSQGLVSMNRVAHDGMRVRAQAGAASFRRRETL
EQLMQDAQAQVQALKQEVGDDPGAGTRRVRAARQRAATEREQRIARAIEAMAEIDKSLSGKGKKARANSTQADRAQDEPAQPQAAPTTQPVGEQCAEEQP
NEARRAKKPKQPRVSTTDHEARVMKMADGGFRPAFNAQLAVDTATLIITGVDLINSGSDMNQMLPMHAQHQDRYGQVPAQWLTDGGFAQHAHIEELDARA
TQAFAPVVAPKAPQRDRYAALPGDSQALGQWRQRMGTEAAKRIYKERAASIECANARLRNRGLQRLNVRGMIKARAVLLWHALAHNLKRMMALNFAFAP

 

Blast result :
Comments
ISThsp22 is 63% aa similar to ISPlpa2.
References
1] ISfinder annotation (2016)
2] Plewniak,Frederic.(2014) Direct submission GenBank.