ISThsp22
- Family IS1182
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
LK931654 | ND | Thiomonas sp. | Thiomonas sp. CB2 |
DNA section
IS Length : 1725 bp
Ends
IR Length : 16/22
IRL : GAGTCTGTGAACATTTGATTTTGATGGCACGAATGCTGCGTGTCTTTGGG
IRR : GTGCCTGTGAACGTTTCAACTTCCGCGATGATCTCAACGCATCGAGACGC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
CCAAGGCGCTCAGCCGCCCGTTGATC | TCA | CTCGGCATGGCCGGCAAATCCCA | 3 |
DNA sequence
GAGTCTGTGAACATTTGATTTTGATGGCACGAATGCTGCGTGTCTTTGGGCATGAGCAATATCACGAACGAAGCGGGAACGAACGGGCACACGGGTGCCC
TGTTTGAGGGCTTGGCGGTCCCTGCGGACAGTGCGGCTGCTCTGAAGCGCAGTAAGCCCCAAGGGACGCCGCGGGAGCAAAGCGCGATGCGCAACCAAGT
CGAATGGCGGGCCTGCGATCTTGACTCGACGCTGCCGGCCGATCATCAGGCCCGTGCCGTCTGGGCCTTTGTGCAGTCGCTCGATCTTCAAGCCCTGCAC
GGACAGATCCGCGCCGTTGAGGGCGGCGTCGGACGCGCGCCCATTGATCCGGCCATTCTGATGGGTCTGTGGCTGTACGCGACGCTGGACGGTGTGGGCT
CGGCGCGCGAACTGGGTCGGCTGTGCGACAGGGATGACGCCTACCGCTGGCTGTGCGGCGGGGTGGGCGTGAACCACCACACGCTGGGCGATTTCCGGGT
CGAACATGCGCAGTGGTTGGACGGCCAACTCACCCGCAGCGTGGCGGGTCTGCTGTCGCAGGGGCTTGTCAGCATGAACCGGGTGGCCCACGACGGCATG
CGCGTGCGCGCCCAGGCGGGTGCGGCCAGCTTCCGGCGCCGCGAGACCTTGGAGCAACTCATGCAAGACGCGCAGGCCCAGGTGCAAGCACTCAAGCAGG
AGGTGGGCGACGATCCGGGGGCCGGCACCCGCCGCGTGCGTGCGGCGCGCCAGCGTGCGGCCACCGAGCGCGAACAACGCATTGCGCGCGCCATCGAGGC
GATGGCCGAGATCGACAAGAGCCTCTCGGGCAAGGGCAAGAAGGCCCGAGCCAACAGCACGCAGGCCGACAGGGCACAAGACGAGCCGGCGCAACCCCAG
GCGGCCCCGACCACGCAACCCGTGGGCGAGCAATGCGCCGAGGAACAACCCAACGAGGCCAGGCGCGCCAAGAAACCCAAGCAGCCGCGCGTGAGCACCA
CCGACCACGAGGCGCGTGTGATGAAGATGGCCGATGGGGGCTTTCGCCCGGCGTTCAATGCGCAACTCGCGGTGGACACCGCCACCCTGATCATCACCGG
CGTGGACCTCATCAACTCGGGCAGCGACATGAACCAGATGCTGCCCATGCACGCGCAGCACCAGGACCGCTATGGTCAAGTGCCCGCGCAGTGGTTGACC
GATGGGGGCTTTGCCCAGCACGCGCACATCGAGGAACTCGATGCGCGCGCCACCCAAGCGTTCGCGCCTGTGGTGGCGCCCAAGGCCCCGCAACGTGATC
GCTATGCTGCGCTGCCCGGCGACAGCCAGGCGCTGGGCCAGTGGCGCCAGCGCATGGGCACCGAGGCGGCCAAGCGAATCTACAAGGAACGTGCTGCCAG
CATCGAGTGCGCCAACGCCCGTTTGCGCAACCGCGGCTTGCAGCGCTTGAACGTGCGCGGAATGATCAAGGCGCGCGCCGTGTTGCTGTGGCATGCGCTG
GCCCACAATTTGAAGCGGATGATGGCGCTGAACTTCGCGTTCGCGCCCTGAGAGGCCGGCAAGGGTCGGCGCGGGCTGCGTTTGCGCTCCACCAGGCCCT
GCATCAACGCCAAGCTCGTCCCAACAAACAAACGGCGGCTCGAATCGACTCGTCGCGCCCGTCCGCAGCGCATGGGCGTCTCGATGCGTTGAGATCATCG
CGGAAGTTGAAACGTTCACAGGCAC
TGTTTGAGGGCTTGGCGGTCCCTGCGGACAGTGCGGCTGCTCTGAAGCGCAGTAAGCCCCAAGGGACGCCGCGGGAGCAAAGCGCGATGCGCAACCAAGT
CGAATGGCGGGCCTGCGATCTTGACTCGACGCTGCCGGCCGATCATCAGGCCCGTGCCGTCTGGGCCTTTGTGCAGTCGCTCGATCTTCAAGCCCTGCAC
GGACAGATCCGCGCCGTTGAGGGCGGCGTCGGACGCGCGCCCATTGATCCGGCCATTCTGATGGGTCTGTGGCTGTACGCGACGCTGGACGGTGTGGGCT
CGGCGCGCGAACTGGGTCGGCTGTGCGACAGGGATGACGCCTACCGCTGGCTGTGCGGCGGGGTGGGCGTGAACCACCACACGCTGGGCGATTTCCGGGT
CGAACATGCGCAGTGGTTGGACGGCCAACTCACCCGCAGCGTGGCGGGTCTGCTGTCGCAGGGGCTTGTCAGCATGAACCGGGTGGCCCACGACGGCATG
CGCGTGCGCGCCCAGGCGGGTGCGGCCAGCTTCCGGCGCCGCGAGACCTTGGAGCAACTCATGCAAGACGCGCAGGCCCAGGTGCAAGCACTCAAGCAGG
AGGTGGGCGACGATCCGGGGGCCGGCACCCGCCGCGTGCGTGCGGCGCGCCAGCGTGCGGCCACCGAGCGCGAACAACGCATTGCGCGCGCCATCGAGGC
GATGGCCGAGATCGACAAGAGCCTCTCGGGCAAGGGCAAGAAGGCCCGAGCCAACAGCACGCAGGCCGACAGGGCACAAGACGAGCCGGCGCAACCCCAG
GCGGCCCCGACCACGCAACCCGTGGGCGAGCAATGCGCCGAGGAACAACCCAACGAGGCCAGGCGCGCCAAGAAACCCAAGCAGCCGCGCGTGAGCACCA
CCGACCACGAGGCGCGTGTGATGAAGATGGCCGATGGGGGCTTTCGCCCGGCGTTCAATGCGCAACTCGCGGTGGACACCGCCACCCTGATCATCACCGG
CGTGGACCTCATCAACTCGGGCAGCGACATGAACCAGATGCTGCCCATGCACGCGCAGCACCAGGACCGCTATGGTCAAGTGCCCGCGCAGTGGTTGACC
GATGGGGGCTTTGCCCAGCACGCGCACATCGAGGAACTCGATGCGCGCGCCACCCAAGCGTTCGCGCCTGTGGTGGCGCCCAAGGCCCCGCAACGTGATC
GCTATGCTGCGCTGCCCGGCGACAGCCAGGCGCTGGGCCAGTGGCGCCAGCGCATGGGCACCGAGGCGGCCAAGCGAATCTACAAGGAACGTGCTGCCAG
CATCGAGTGCGCCAACGCCCGTTTGCGCAACCGCGGCTTGCAGCGCTTGAACGTGCGCGGAATGATCAAGGCGCGCGCCGTGTTGCTGTGGCATGCGCTG
GCCCACAATTTGAAGCGGATGATGGCGCTGAACTTCGCGTTCGCGCCCTGAGAGGCCGGCAAGGGTCGGCGCGGGCTGCGTTTGCGCTCCACCAGGCCCT
GCATCAACGCCAAGCTCGTCCCAACAAACAAACGGCGGCTCGAATCGACTCGTCGCGCCCGTCCGCAGCGCATGGGCGTCTCGATGCGTTGAGATCATCG
CGGAAGTTGAAACGTTCACAGGCAC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1500 bp | 499 aa | 52 | 1551 | + | No |
Chemistry : DDE
ORF sequence :
MSNITNEAGTNGHTGALFEGLAVPADSAAALKRSKPQGTPREQSAMRNQVEWRACDLDSTLPADHQARAVWAFVQSLDLQALHGQIRAVEGGVGRAPIDP
AILMGLWLYATLDGVGSARELGRLCDRDDAYRWLCGGVGVNHHTLGDFRVEHAQWLDGQLTRSVAGLLSQGLVSMNRVAHDGMRVRAQAGAASFRRRETL
EQLMQDAQAQVQALKQEVGDDPGAGTRRVRAARQRAATEREQRIARAIEAMAEIDKSLSGKGKKARANSTQADRAQDEPAQPQAAPTTQPVGEQCAEEQP
NEARRAKKPKQPRVSTTDHEARVMKMADGGFRPAFNAQLAVDTATLIITGVDLINSGSDMNQMLPMHAQHQDRYGQVPAQWLTDGGFAQHAHIEELDARA
TQAFAPVVAPKAPQRDRYAALPGDSQALGQWRQRMGTEAAKRIYKERAASIECANARLRNRGLQRLNVRGMIKARAVLLWHALAHNLKRMMALNFAFAP
AILMGLWLYATLDGVGSARELGRLCDRDDAYRWLCGGVGVNHHTLGDFRVEHAQWLDGQLTRSVAGLLSQGLVSMNRVAHDGMRVRAQAGAASFRRRETL
EQLMQDAQAQVQALKQEVGDDPGAGTRRVRAARQRAATEREQRIARAIEAMAEIDKSLSGKGKKARANSTQADRAQDEPAQPQAAPTTQPVGEQCAEEQP
NEARRAKKPKQPRVSTTDHEARVMKMADGGFRPAFNAQLAVDTATLIITGVDLINSGSDMNQMLPMHAQHQDRYGQVPAQWLTDGGFAQHAHIEELDARA
TQAFAPVVAPKAPQRDRYAALPGDSQALGQWRQRMGTEAAKRIYKERAASIECANARLRNRGLQRLNVRGMIKARAVLLWHALAHNLKRMMALNFAFAP
Blast result :
Comments
ISThsp22 is 63% aa similar to ISPlpa2.
References
1] ISfinder annotation (2016)
2] Plewniak,Frederic.(2014) Direct submission GenBank.
2] Plewniak,Frederic.(2014) Direct submission GenBank.