ISPst13
- Family IS1182
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
AMVM01000009 | ND | Pseudomonas stutzeri | Pseudomonas stutzeri B1SMN1 |
DNA section
IS Length : 1512 bp
Ends
IR Length : 13/19
IRL : GAGTCTGTGAAGATTTCCGAGAAATGCTTTTGGTATAATTCTTGCGTCCC
IRR : GAGCTTGTGAGCTTTTCGGTCACGCCCGCCGAAGGGGGCGCGAGTGGGTT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
CGTTATACTCAGCGCTCCGATCAC | TGA | GCTGCCTACACTCCCATGAAATCTTCTA | 3 |
DNA sequence
GAGTCTGTGAAGATTTCCGAGAAATGCTTTTGGTATAATTCTTGCGTCCCGGCCACGATCTCGTAACCCTGCCATGAAAGCTCACGCACGCGTGATTTTG
CCCAACCGCACCCAGATGGAGTTTCGCGCCAGCGACCTCGAGTCGCTGCTGCCGGAAGGTCATCGGGCGCGGCTGGTGTGGTCGTATGTTGCCGGGCAGG
ATCTGGCGCGCTTCTATGAGCGGATCCGGGTGCGTGAGGGCGGGGTTGGTCGGGCGGCGATTGCGCCGGAGATTCTGTTGTCGCTGTGGCTTTACGCGAC
GCTCGACGGGGTGGGCAGCGCGCGCGAGGTGGCGCGCCTGACCGATGCGCATGATGCGTATCGTTGGCTGTGCGGCGGGGTGCAGGTCAATTACCACACG
CTGTCGGACTTTCGGAAGGATCACGGCGAGGCGCTCGACGAGTTGCTCAGCGCTAATGTGGCAACGCTCATTGCCGCCGGGGTGGTGAAGCTGCGCCAGG
TGGCGCAGGATGGCATGCGGGTGCGGGCCAGTGCGGGGGCGGGATCGTTCCGGCGCGAGGACAAGCTCGCGGGCTACCTGGAGGCGGCCCGCGAGCGGGT
CGCGCAGCTCAAGGCCGAGCTTGAAGCCGACCCGGGCAGGGCCGAGCGGGCTCGTCAGGCGGCGCGGCTGCGCGCGGCCCGTGAGCGCGAGACCCGGGTG
GCCGAGGCGCTGGCGCGCTTGCCCGAACTCGAAGCGATCAAGCGCCGCCAGGGCAAGGCGGCCGATCAGGCGCGCGCCTCGACGACCGATGCCCAGGCGA
CGGTCATGAAGATGGGCGACGGCGGGTTTCGGCCTGCGTACAACCCGCAGTTGGCCAGCGATGTCGACTCGCTGGTGATTGTGGGCGTCGAGGTGGCCAC
GATTGGAAGCGACCAGGGTCAGATGGTGCCGATGATCGAGCAGGTGCGCGAGCGTTGCGGTCAGACGCCCGAGGCCTGGCTGGTCGATGGCGGCTTTGTG
GGTCACGAGCAGGTCGAACAGGCCAGCGCGCACACCACGGTGTATGGGCCGGTGCCGGCGGCCAAGGACAAGGCGGTGGACCCACACCAGCCCAAGCCCG
ACGACAGTCCTGGCGTGGCGGCATGGCGCGCGCGCATGGGGACCGATGAGGCCAAGGCGATCTACAAGAACCGCGCCGCAACCGCCGAATGCGTCAATGC
CCACAGCCGCAACCGGGGACTCCAGCAGTTCCGCGTGCGCGGACTGGCCAAGGTCAAGTGCGTGGTCCTGTTCTTTGCCTTGGCCCACAACCTGATGCGG
ATGGCCAGCCTCGCGCCGGAGATGCTTGCCTTCGGGAAAGGTGCGTCTGCAGTGTCCGGAATCGGGGCTTGAGCGTACGAAACGGCGAAAAACGACCCGA
AAAACCAGATAACGCGAGTGCCTTCATGCTGAACAGATCATCTGACCGCCACAGCGATCACAAACCCACTCGCGCCCCCTTCGGCGGGCGTGACCGAAAA
GCTCACAAGCTC
CCCAACCGCACCCAGATGGAGTTTCGCGCCAGCGACCTCGAGTCGCTGCTGCCGGAAGGTCATCGGGCGCGGCTGGTGTGGTCGTATGTTGCCGGGCAGG
ATCTGGCGCGCTTCTATGAGCGGATCCGGGTGCGTGAGGGCGGGGTTGGTCGGGCGGCGATTGCGCCGGAGATTCTGTTGTCGCTGTGGCTTTACGCGAC
GCTCGACGGGGTGGGCAGCGCGCGCGAGGTGGCGCGCCTGACCGATGCGCATGATGCGTATCGTTGGCTGTGCGGCGGGGTGCAGGTCAATTACCACACG
CTGTCGGACTTTCGGAAGGATCACGGCGAGGCGCTCGACGAGTTGCTCAGCGCTAATGTGGCAACGCTCATTGCCGCCGGGGTGGTGAAGCTGCGCCAGG
TGGCGCAGGATGGCATGCGGGTGCGGGCCAGTGCGGGGGCGGGATCGTTCCGGCGCGAGGACAAGCTCGCGGGCTACCTGGAGGCGGCCCGCGAGCGGGT
CGCGCAGCTCAAGGCCGAGCTTGAAGCCGACCCGGGCAGGGCCGAGCGGGCTCGTCAGGCGGCGCGGCTGCGCGCGGCCCGTGAGCGCGAGACCCGGGTG
GCCGAGGCGCTGGCGCGCTTGCCCGAACTCGAAGCGATCAAGCGCCGCCAGGGCAAGGCGGCCGATCAGGCGCGCGCCTCGACGACCGATGCCCAGGCGA
CGGTCATGAAGATGGGCGACGGCGGGTTTCGGCCTGCGTACAACCCGCAGTTGGCCAGCGATGTCGACTCGCTGGTGATTGTGGGCGTCGAGGTGGCCAC
GATTGGAAGCGACCAGGGTCAGATGGTGCCGATGATCGAGCAGGTGCGCGAGCGTTGCGGTCAGACGCCCGAGGCCTGGCTGGTCGATGGCGGCTTTGTG
GGTCACGAGCAGGTCGAACAGGCCAGCGCGCACACCACGGTGTATGGGCCGGTGCCGGCGGCCAAGGACAAGGCGGTGGACCCACACCAGCCCAAGCCCG
ACGACAGTCCTGGCGTGGCGGCATGGCGCGCGCGCATGGGGACCGATGAGGCCAAGGCGATCTACAAGAACCGCGCCGCAACCGCCGAATGCGTCAATGC
CCACAGCCGCAACCGGGGACTCCAGCAGTTCCGCGTGCGCGGACTGGCCAAGGTCAAGTGCGTGGTCCTGTTCTTTGCCTTGGCCCACAACCTGATGCGG
ATGGCCAGCCTCGCGCCGGAGATGCTTGCCTTCGGGAAAGGTGCGTCTGCAGTGTCCGGAATCGGGGCTTGAGCGTACGAAACGGCGAAAAACGACCCGA
AAAACCAGATAACGCGAGTGCCTTCATGCTGAACAGATCATCTGACCGCCACAGCGATCACAAACCCACTCGCGCCCCCTTCGGCGGGCGTGACCGAAAA
GCTCACAAGCTC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1299 bp | 432 aa | 74 | 1372 | + | No |
Chemistry : DDE
ORF sequence :
MKAHARVILPNRTQMEFRASDLESLLPEGHRARLVWSYVAGQDLARFYERIRVREGGVGRAAIAPEILLSLWLYATLDGVGSAREVARLTDAHDAYRWLC
GGVQVNYHTLSDFRKDHGEALDELLSANVATLIAAGVVKLRQVAQDGMRVRASAGAGSFRREDKLAGYLEAARERVAQLKAELEADPGRAERARQAARLR
AARERETRVAEALARLPELEAIKRRQGKAADQARASTTDAQATVMKMGDGGFRPAYNPQLASDVDSLVIVGVEVATIGSDQGQMVPMIEQVRERCGQTPE
AWLVDGGFVGHEQVEQASAHTTVYGPVPAAKDKAVDPHQPKPDDSPGVAAWRARMGTDEAKAIYKNRAATAECVNAHSRNRGLQQFRVRGLAKVKCVVLF
FALAHNLMRMASLAPEMLAFGKGASAVSGIGA
GGVQVNYHTLSDFRKDHGEALDELLSANVATLIAAGVVKLRQVAQDGMRVRASAGAGSFRREDKLAGYLEAARERVAQLKAELEADPGRAERARQAARLR
AARERETRVAEALARLPELEAIKRRQGKAADQARASTTDAQATVMKMGDGGFRPAYNPQLASDVDSLVIVGVEVATIGSDQGQMVPMIEQVRERCGQTPE
AWLVDGGFVGHEQVEQASAHTTVYGPVPAAKDKAVDPHQPKPDDSPGVAAWRARMGTDEAKAIYKNRAATAECVNAHSRNRGLQQFRVRGLAKVKCVVLF
FALAHNLMRMASLAPEMLAFGKGASAVSGIGA
Blast result :
Comments
ISPst13 is 66% aa similar to ISAde2.
References
1] ISfinder annotation (2016)
2] Busquets,A., Pena,A., Gomila,M., Mayol,J., Bosch,R., Nogales,B., Garcia-Valdes,E., Bennasar,A. and Lalucat,J. (2013) Genome Announc 1 (4), e00584-13.
2] Busquets,A., Pena,A., Gomila,M., Mayol,J., Bosch,R., Nogales,B., Garcia-Valdes,E., Bennasar,A. and Lalucat,J. (2013) Genome Announc 1 (4), e00584-13.