ISPst13

  • Family IS1182
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
AMVM01000009 ND Pseudomonas stutzeri
Pseudomonas stutzeri B1SMN1
DNA section
IS Length : 1512 bp

Ends


IR Length : 13/19

IRL : GAGTCTGTGAAGATTTCCGAGAAATGCTTTTGGTATAATTCTTGCGTCCC
IRR : GAGCTTGTGAGCTTTTCGGTCACGCCCGCCGAAGGGGGCGCGAGTGGGTT

Insertion site


Left flankDirect repeatRight flankDR Length
CGTTATACTCAGCGCTCCGATCACTGAGCTGCCTACACTCCCATGAAATCTTCTA3

DNA sequence

GAGTCTGTGAAGATTTCCGAGAAATGCTTTTGGTATAATTCTTGCGTCCCGGCCACGATCTCGTAACCCTGCCATGAAAGCTCACGCACGCGTGATTTTG
CCCAACCGCACCCAGATGGAGTTTCGCGCCAGCGACCTCGAGTCGCTGCTGCCGGAAGGTCATCGGGCGCGGCTGGTGTGGTCGTATGTTGCCGGGCAGG
ATCTGGCGCGCTTCTATGAGCGGATCCGGGTGCGTGAGGGCGGGGTTGGTCGGGCGGCGATTGCGCCGGAGATTCTGTTGTCGCTGTGGCTTTACGCGAC
GCTCGACGGGGTGGGCAGCGCGCGCGAGGTGGCGCGCCTGACCGATGCGCATGATGCGTATCGTTGGCTGTGCGGCGGGGTGCAGGTCAATTACCACACG
CTGTCGGACTTTCGGAAGGATCACGGCGAGGCGCTCGACGAGTTGCTCAGCGCTAATGTGGCAACGCTCATTGCCGCCGGGGTGGTGAAGCTGCGCCAGG
TGGCGCAGGATGGCATGCGGGTGCGGGCCAGTGCGGGGGCGGGATCGTTCCGGCGCGAGGACAAGCTCGCGGGCTACCTGGAGGCGGCCCGCGAGCGGGT
CGCGCAGCTCAAGGCCGAGCTTGAAGCCGACCCGGGCAGGGCCGAGCGGGCTCGTCAGGCGGCGCGGCTGCGCGCGGCCCGTGAGCGCGAGACCCGGGTG
GCCGAGGCGCTGGCGCGCTTGCCCGAACTCGAAGCGATCAAGCGCCGCCAGGGCAAGGCGGCCGATCAGGCGCGCGCCTCGACGACCGATGCCCAGGCGA
CGGTCATGAAGATGGGCGACGGCGGGTTTCGGCCTGCGTACAACCCGCAGTTGGCCAGCGATGTCGACTCGCTGGTGATTGTGGGCGTCGAGGTGGCCAC
GATTGGAAGCGACCAGGGTCAGATGGTGCCGATGATCGAGCAGGTGCGCGAGCGTTGCGGTCAGACGCCCGAGGCCTGGCTGGTCGATGGCGGCTTTGTG
GGTCACGAGCAGGTCGAACAGGCCAGCGCGCACACCACGGTGTATGGGCCGGTGCCGGCGGCCAAGGACAAGGCGGTGGACCCACACCAGCCCAAGCCCG
ACGACAGTCCTGGCGTGGCGGCATGGCGCGCGCGCATGGGGACCGATGAGGCCAAGGCGATCTACAAGAACCGCGCCGCAACCGCCGAATGCGTCAATGC
CCACAGCCGCAACCGGGGACTCCAGCAGTTCCGCGTGCGCGGACTGGCCAAGGTCAAGTGCGTGGTCCTGTTCTTTGCCTTGGCCCACAACCTGATGCGG
ATGGCCAGCCTCGCGCCGGAGATGCTTGCCTTCGGGAAAGGTGCGTCTGCAGTGTCCGGAATCGGGGCTTGAGCGTACGAAACGGCGAAAAACGACCCGA
AAAACCAGATAACGCGAGTGCCTTCATGCTGAACAGATCATCTGACCGCCACAGCGATCACAAACCCACTCGCGCCCCCTTCGGCGGGCGTGACCGAAAA
GCTCACAAGCTC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1299 bp432 aa741372+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MKAHARVILPNRTQMEFRASDLESLLPEGHRARLVWSYVAGQDLARFYERIRVREGGVGRAAIAPEILLSLWLYATLDGVGSAREVARLTDAHDAYRWLC
GGVQVNYHTLSDFRKDHGEALDELLSANVATLIAAGVVKLRQVAQDGMRVRASAGAGSFRREDKLAGYLEAARERVAQLKAELEADPGRAERARQAARLR
AARERETRVAEALARLPELEAIKRRQGKAADQARASTTDAQATVMKMGDGGFRPAYNPQLASDVDSLVIVGVEVATIGSDQGQMVPMIEQVRERCGQTPE
AWLVDGGFVGHEQVEQASAHTTVYGPVPAAKDKAVDPHQPKPDDSPGVAAWRARMGTDEAKAIYKNRAATAECVNAHSRNRGLQQFRVRGLAKVKCVVLF
FALAHNLMRMASLAPEMLAFGKGASAVSGIGA

 

Blast result :
Comments
ISPst13 is 66% aa similar to ISAde2.
References
1] ISfinder annotation (2016)
2] Busquets,A., Pena,A., Gomila,M., Mayol,J., Bosch,R., Nogales,B., Garcia-Valdes,E., Bennasar,A. and Lalucat,J. (2013) Genome Announc 1 (4), e00584-13.