ISMets1

  • Family IS5
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
JJOW01000201 ND Methanosarcina sp.
Methanosarcina sp. 2.H.T.1A.15
DNA section
IS Length : 1252 bp

Ends


IR Length : 14/24

IRL : GGGTCCTCTTAAACTCACTCCTTAACTGGAACTTATTTTCCATTTTTTCT
IRR : GCCCCCTCTTCACTTCGTTACTCAGAGAAAGCTTGTAATTCCTTCCTTTC

Insertion site


Left flankDirect repeatRight flankDR Length
CTATTTTTATAAAGAAATATATAAAAGAAATAGAATTGTTAAAAAAAA0

DNA sequence

GGGTCCTCTTAAACTCACTCCTTAACTGGAACTTATTTTCCATTTTTTCTGCCAATTAAGCCAGAGAATAGTTTCCCCAAAAAAAGTACATCTTATTTTT
GATCTAAAATCTAATTAAGACCTTAAAAAACCGTAAATTTTATTGAGGAGGACGTACAATCCTCCTCTGGCGATATATTATGAAAGCTCCGCTTATACCA
CTAAACGAAGATTTCAAATGGAAATTGTTATCCGAAATATTAAACGTTTTTGATCTGAGATCTTGCAGGCAAATTCTCACAAGGAGGGGCATTCTGCCCC
TCCAGAAATCAGTGCCTGCTATTAAAATTGTACTCCTGAGCATGTTTTTTTCCTGTGAAATTTCCTATTCTATCAGAGAATTAAAAGAAAGGGAAAGCTT
GAGAAACTTTTTAAAAATCAGTTCAGTACCAACTGAAAATGAAATTTATGGCGTTCTGAGTAAATATGAACCAAACCAGTTTACTTATTTTGTTTTTGAA
CTCTTGAACGAATTATGCCCTGAGAGAAAAAACGGATCAAGAGGCATTATCATTGACAGTACTGACATAAATCTTAACCTGAATTGGCATGCAAAAAAGA
TTACCAAAAAAAGCCTGGAAAATAAAGAATACAAGTGGGGTCACTCAACACACAGAGGATTCTTCATTGGCATGAAACTGACTCTTGCACTTGAATACCA
AACATTGAAACCTTTAGCGTTTCTGATTAATGAAGCAAATGTACCAGAAACTAAAATTTATCCCGAAATACTTAAAGAACTCAAAAGACGGAGAATATTA
AAAGCAGGAGACATTGTTTATGCTGATAGAGGATACTATTCTTACGAAAACTACGTTATATCTGTCAGAGAGTTCAAAGTGGTACCTTTAATATTCCCAA
GGAAAAACTGTAATTTTAAGAAACTTTTCAATATGCTGAGATATCCTCTGAAAATATTTGATTCAAGAAGAGACACTGAAAAAGAAATAAAAATCTACAA
AGAAATAATTGCAAAATTTAAAGAGTTAATTAGCAAATGGAAAGAGTTCAGACCTGTGAGATCAATCATAGAAGATATATTCAAATTGGCGAAGAAAGCA
TACTCTATGGAGGATTTGCACAGATATACAAGGAGTTCTGTCCAAAAGTACTGCTCTTTAGCTGTACTTTTAGTGGGGATAACTGTAAATTACGGCATTA
AAGAAAGGAAGGAATTACAAGCTTTCTCTGAGTAACGAAGTGAAGAGGGGGC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1056 bp351 aa1801235+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MKAPLIPLNEDFKWKLLSEILNVFDLRSCRQILTRRGILPLQKSVPAIKIVLLSMFFSCEISYSIRELKERESLRNFLKISSVPTENEIYGVLSKYEPNQ
FTYFVFELLNELCPERKNGSRGIIIDSTDINLNLNWHAKKITKKSLENKEYKWGHSTHRGFFIGMKLTLALEYQTLKPLAFLINEANVPETKIYPEILKE
LKRRRILKAGDIVYADRGYYSYENYVISVREFKVVPLIFPRKNCNFKKLFNMLRYPLKIFDSRRDTEKEIKIYKEIIAKFKELISKWKEFRPVRSIIEDI
FKLAKKAYSMEDLHRYTRSSVQKYCSLAVLLVGITVNYGIKERKELQAFSE

 

Blast result :
Comments
ISMets1 is 94% aa similar to ISMba15.
References
1] ISfinder annotation (2016)
2] Youngblut,N.D., Wirth,J.S., Henriksen,J.R., Smith,M., Simon,H., Metcalf,W.W. and Whitaker,R.J. (2015) ISME J. Oct;9(10):2191-205