ISPmo1
- Family IS1182
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
ND | Pseudomonas monteilii | Pseudomonas monteilii Pseudomonas stutzeri 273 Pseudomonas sp. MT-1 Pseudomonas stutzeri 19SMN4 plasmid pLIB119 |
DNA section
IS Length : 1655 bp
Ends
IR Length : 17
IRL : CAGAGTGTGTAAAAACATCCCGGTAAACCCTTGCTATGATTTCCGAGAAT
IRR : CAGAGTGTGTAAAAACACTTTCTTATCTTGCGTGCTTCAGCCCATTGCTC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
NNNNN | GGCC | NNNNN | 4 |
GTCCGCTTGT | GGCC | GTTAGCGCCC | 4 |
GGCAGGAATC | ggcc | GTTAGGTGCC | 4 |
GGCAGCTGTC | ggcc | AAGAGCGGAC | 4 |
GGCCGCTTTT | ggcc | GTTAGCGCCC | 4 |
DNA sequence
CAGAGTGTGTAAAAACATCCCGGTAAACCCTTGCTATGATTTCCGAGAATCTCATCGCAAGGGACGCCCATGAAACGGTTTATCCAGGGTGAACATCGAG
GTCAAAGCACCTTACTTCCCGAAAGCCTCGACGACTACGTCAGCGATACCAATCCGGTTCGGGTGGTTGACGTTTTCGTCGATGAACTCGATTTGGCCAA
TCTAGGTTTTGATGGCGTCATTCCAGCCGAAACCGGCAGACCTGCCTACCACCCGGCGATCCTGCTGAAGATCTACATCTACGGTTACCTAAACCGAATT
CAATCGAGCCGACGTCTGGAGCGAGAAGCCCAGCGCAACGTCGAACTCATGTGGCTAACCGGGCGTTTGATGCCCGATTTCAAGACCATCGCCAACTTCC
GAAAAGACAACAGCAAGGCCATTCGCGGCGTCTGCCGCCAGTTCGTTTTGCTCTGCCAGCAGTTGGGGTTGTTTGACGAAAACCTGGTTGCCATCGACGG
CAGCAAATTCAAGGCAGTGAACAACCGTGACCGCAATTTCACCAGCGCCAAACTGAAGCGGCGCATGGAAGAAATCGAGGCGAGCATCGGCCGTTATTTG
GCTGCGCTCGATGCGGCTGATCGACAGATTCCTAGCGCCTCCGCGCCAGACATTGCCAGCCTGGAAGATAAAATCGCCAAGCTCAAATCGCAGATGAAAG
AGCTTCAAGGGATCGAAACTCAGCTCAACGATTCCCCTGACAAACAGGTTTCGCTGACCGACTCGGATGCCCGTTCGATGATGACGCGCGGCAGCGGTAT
CGTCGGCTACAACGTGCAGACGGCGGTCGATACGCAGCACCATTTGATTGTTGCTCATGAGGTCACCAACAGAGGTTCTGACCGCGACCAACTCAGCTCG
ATGGCCAAGCAAGCTAGGGAAGCCATTGGCGCAGAAACATTGTCGGTAGTCGCCGACCGAGGCTACTTCAAGGGTGAAGAAATCCTCGCCTGTCACGATG
CAAACATCACCGCTTATGTGCCAAAGCCGATGACTTCAAGCGCCAAGGCTGATGGCCGGTTCAACAAAGATGCCTTCGTTTATGACGCGACGAAAAACGA
ATATACATGCCCGGCTGGAGAGGCACTGATTTGGCGATTCTCCAGCGTTGAGAAAGGCATGAATATGCACTGTTACTGGAGTTCAAAGTGCCAGAGTTGC
GCGCTGAAAACCCAGTGCACGCCAAGCACAAATCGTCGAGTAAGGCGCTGGGAACATGAAGCGGTGCTGGAGGAAATGCAACACCGGCTGAACCAAGCAC
CGGAGATGATGCGGGTTCGGAAGCGGACTGTTGAGCATCCCTTCGGGACGCTCAAACAATGGATGGGAGCAACGCACTTCCTGACTCGAAAACTGAATGG
GGTGAGCGCAGAAATGAGCTTGAATGTGCTCGCCTACAACTTGAAGCGGGTGATGAAAATCATCGGCACCGAAGGCTTGTTGAAGGCGATGGCGGCGTAA
AAGCCCAGCTTTTACTGCCCCAAGAGGTGCCAAAGCGCTTCATACGCGCTCTGAAGCGTTACCGGCGCTGATCGTGGTAAATAATCGGGAAATCGCCACG
CATAGGAGCAATGGGCTGAAGCACGCAAGATAAGAAAGTGTTTTTACACACTCTG
GTCAAAGCACCTTACTTCCCGAAAGCCTCGACGACTACGTCAGCGATACCAATCCGGTTCGGGTGGTTGACGTTTTCGTCGATGAACTCGATTTGGCCAA
TCTAGGTTTTGATGGCGTCATTCCAGCCGAAACCGGCAGACCTGCCTACCACCCGGCGATCCTGCTGAAGATCTACATCTACGGTTACCTAAACCGAATT
CAATCGAGCCGACGTCTGGAGCGAGAAGCCCAGCGCAACGTCGAACTCATGTGGCTAACCGGGCGTTTGATGCCCGATTTCAAGACCATCGCCAACTTCC
GAAAAGACAACAGCAAGGCCATTCGCGGCGTCTGCCGCCAGTTCGTTTTGCTCTGCCAGCAGTTGGGGTTGTTTGACGAAAACCTGGTTGCCATCGACGG
CAGCAAATTCAAGGCAGTGAACAACCGTGACCGCAATTTCACCAGCGCCAAACTGAAGCGGCGCATGGAAGAAATCGAGGCGAGCATCGGCCGTTATTTG
GCTGCGCTCGATGCGGCTGATCGACAGATTCCTAGCGCCTCCGCGCCAGACATTGCCAGCCTGGAAGATAAAATCGCCAAGCTCAAATCGCAGATGAAAG
AGCTTCAAGGGATCGAAACTCAGCTCAACGATTCCCCTGACAAACAGGTTTCGCTGACCGACTCGGATGCCCGTTCGATGATGACGCGCGGCAGCGGTAT
CGTCGGCTACAACGTGCAGACGGCGGTCGATACGCAGCACCATTTGATTGTTGCTCATGAGGTCACCAACAGAGGTTCTGACCGCGACCAACTCAGCTCG
ATGGCCAAGCAAGCTAGGGAAGCCATTGGCGCAGAAACATTGTCGGTAGTCGCCGACCGAGGCTACTTCAAGGGTGAAGAAATCCTCGCCTGTCACGATG
CAAACATCACCGCTTATGTGCCAAAGCCGATGACTTCAAGCGCCAAGGCTGATGGCCGGTTCAACAAAGATGCCTTCGTTTATGACGCGACGAAAAACGA
ATATACATGCCCGGCTGGAGAGGCACTGATTTGGCGATTCTCCAGCGTTGAGAAAGGCATGAATATGCACTGTTACTGGAGTTCAAAGTGCCAGAGTTGC
GCGCTGAAAACCCAGTGCACGCCAAGCACAAATCGTCGAGTAAGGCGCTGGGAACATGAAGCGGTGCTGGAGGAAATGCAACACCGGCTGAACCAAGCAC
CGGAGATGATGCGGGTTCGGAAGCGGACTGTTGAGCATCCCTTCGGGACGCTCAAACAATGGATGGGAGCAACGCACTTCCTGACTCGAAAACTGAATGG
GGTGAGCGCAGAAATGAGCTTGAATGTGCTCGCCTACAACTTGAAGCGGGTGATGAAAATCATCGGCACCGAAGGCTTGTTGAAGGCGATGGCGGCGTAA
AAGCCCAGCTTTTACTGCCCCAAGAGGTGCCAAAGCGCTTCATACGCGCTCTGAAGCGTTACCGGCGCTGATCGTGGTAAATAATCGGGAAATCGCCACG
CATAGGAGCAATGGGCTGAAGCACGCAAGATAAGAAAGTGTTTTTACACACTCTG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1431 bp | 476 aa | 70 | 1500 | + | No |
Chemistry : DDE
ORF sequence :
MKRFIQGEHRGQSTLLPESLDDYVSDTNPVRVVDVFVDELDLANLGFDGVIPAETGRPAYHPAILLKIYIYGYLNRIQSSRRLEREAQRNVELMWLTGRL
MPDFKTIANFRKDNSKAIRGVCRQFVLLCQQLGLFDENLVAIDGSKFKAVNNRDRNFTSAKLKRRMEEIEASIGRYLAALDAADRQIPSASAPDIASLED
KIAKLKSQMKELQGIETQLNDSPDKQVSLTDSDARSMMTRGSGIVGYNVQTAVDTQHHLIVAHEVTNRGSDRDQLSSMAKQAREAIGAETLSVVADRGYF
KGEEILACHDANITAYVPKPMTSSAKADGRFNKDAFVYDATKNEYTCPAGEALIWRFSSVEKGMNMHCYWSSKCQSCALKTQCTPSTNRRVRRWEHEAVL
EEMQHRLNQAPEMMRVRKRTVEHPFGTLKQWMGATHFLTRKLNGVSAEMSLNVLAYNLKRVMKIIGTEGLLKAMAA
MPDFKTIANFRKDNSKAIRGVCRQFVLLCQQLGLFDENLVAIDGSKFKAVNNRDRNFTSAKLKRRMEEIEASIGRYLAALDAADRQIPSASAPDIASLED
KIAKLKSQMKELQGIETQLNDSPDKQVSLTDSDARSMMTRGSGIVGYNVQTAVDTQHHLIVAHEVTNRGSDRDQLSSMAKQAREAIGAETLSVVADRGYF
KGEEILACHDANITAYVPKPMTSSAKADGRFNKDAFVYDATKNEYTCPAGEALIWRFSSVEKGMNMHCYWSSKCQSCALKTQCTPSTNRRVRRWEHEAVL
EEMQHRLNQAPEMMRVRKRTVEHPFGTLKQWMGATHFLTRKLNGVSAEMSLNVLAYNLKRVMKIIGTEGLLKAMAA
Blast result :
Comments
ISPmo1 is 87% aa similar to ISPa7.
References
1] Dongsheng Zhou (2016) Direct submission.
2] Wu,S. and Sun,C. (2016) Direct submission GenBank.
2] Wu,S. and Sun,C. (2016) Direct submission GenBank.