ISPmo1

  • Family IS1182
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
ND Pseudomonas monteilii
Pseudomonas monteilii
Pseudomonas stutzeri 273
Pseudomonas sp. MT-1
Pseudomonas stutzeri 19SMN4 plasmid pLIB119
DNA section
IS Length : 1655 bp

Ends


IR Length : 17

IRL : CAGAGTGTGTAAAAACATCCCGGTAAACCCTTGCTATGATTTCCGAGAAT
IRR : CAGAGTGTGTAAAAACACTTTCTTATCTTGCGTGCTTCAGCCCATTGCTC

Insertion site


Left flankDirect repeatRight flankDR Length
NNNNNGGCCNNNNN4
GTCCGCTTGTGGCCGTTAGCGCCC4
GGCAGGAATCggccGTTAGGTGCC4
GGCAGCTGTCggccAAGAGCGGAC4
GGCCGCTTTTggccGTTAGCGCCC4

DNA sequence

CAGAGTGTGTAAAAACATCCCGGTAAACCCTTGCTATGATTTCCGAGAATCTCATCGCAAGGGACGCCCATGAAACGGTTTATCCAGGGTGAACATCGAG
GTCAAAGCACCTTACTTCCCGAAAGCCTCGACGACTACGTCAGCGATACCAATCCGGTTCGGGTGGTTGACGTTTTCGTCGATGAACTCGATTTGGCCAA
TCTAGGTTTTGATGGCGTCATTCCAGCCGAAACCGGCAGACCTGCCTACCACCCGGCGATCCTGCTGAAGATCTACATCTACGGTTACCTAAACCGAATT
CAATCGAGCCGACGTCTGGAGCGAGAAGCCCAGCGCAACGTCGAACTCATGTGGCTAACCGGGCGTTTGATGCCCGATTTCAAGACCATCGCCAACTTCC
GAAAAGACAACAGCAAGGCCATTCGCGGCGTCTGCCGCCAGTTCGTTTTGCTCTGCCAGCAGTTGGGGTTGTTTGACGAAAACCTGGTTGCCATCGACGG
CAGCAAATTCAAGGCAGTGAACAACCGTGACCGCAATTTCACCAGCGCCAAACTGAAGCGGCGCATGGAAGAAATCGAGGCGAGCATCGGCCGTTATTTG
GCTGCGCTCGATGCGGCTGATCGACAGATTCCTAGCGCCTCCGCGCCAGACATTGCCAGCCTGGAAGATAAAATCGCCAAGCTCAAATCGCAGATGAAAG
AGCTTCAAGGGATCGAAACTCAGCTCAACGATTCCCCTGACAAACAGGTTTCGCTGACCGACTCGGATGCCCGTTCGATGATGACGCGCGGCAGCGGTAT
CGTCGGCTACAACGTGCAGACGGCGGTCGATACGCAGCACCATTTGATTGTTGCTCATGAGGTCACCAACAGAGGTTCTGACCGCGACCAACTCAGCTCG
ATGGCCAAGCAAGCTAGGGAAGCCATTGGCGCAGAAACATTGTCGGTAGTCGCCGACCGAGGCTACTTCAAGGGTGAAGAAATCCTCGCCTGTCACGATG
CAAACATCACCGCTTATGTGCCAAAGCCGATGACTTCAAGCGCCAAGGCTGATGGCCGGTTCAACAAAGATGCCTTCGTTTATGACGCGACGAAAAACGA
ATATACATGCCCGGCTGGAGAGGCACTGATTTGGCGATTCTCCAGCGTTGAGAAAGGCATGAATATGCACTGTTACTGGAGTTCAAAGTGCCAGAGTTGC
GCGCTGAAAACCCAGTGCACGCCAAGCACAAATCGTCGAGTAAGGCGCTGGGAACATGAAGCGGTGCTGGAGGAAATGCAACACCGGCTGAACCAAGCAC
CGGAGATGATGCGGGTTCGGAAGCGGACTGTTGAGCATCCCTTCGGGACGCTCAAACAATGGATGGGAGCAACGCACTTCCTGACTCGAAAACTGAATGG
GGTGAGCGCAGAAATGAGCTTGAATGTGCTCGCCTACAACTTGAAGCGGGTGATGAAAATCATCGGCACCGAAGGCTTGTTGAAGGCGATGGCGGCGTAA
AAGCCCAGCTTTTACTGCCCCAAGAGGTGCCAAAGCGCTTCATACGCGCTCTGAAGCGTTACCGGCGCTGATCGTGGTAAATAATCGGGAAATCGCCACG
CATAGGAGCAATGGGCTGAAGCACGCAAGATAAGAAAGTGTTTTTACACACTCTG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1431 bp476 aa701500+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MKRFIQGEHRGQSTLLPESLDDYVSDTNPVRVVDVFVDELDLANLGFDGVIPAETGRPAYHPAILLKIYIYGYLNRIQSSRRLEREAQRNVELMWLTGRL
MPDFKTIANFRKDNSKAIRGVCRQFVLLCQQLGLFDENLVAIDGSKFKAVNNRDRNFTSAKLKRRMEEIEASIGRYLAALDAADRQIPSASAPDIASLED
KIAKLKSQMKELQGIETQLNDSPDKQVSLTDSDARSMMTRGSGIVGYNVQTAVDTQHHLIVAHEVTNRGSDRDQLSSMAKQAREAIGAETLSVVADRGYF
KGEEILACHDANITAYVPKPMTSSAKADGRFNKDAFVYDATKNEYTCPAGEALIWRFSSVEKGMNMHCYWSSKCQSCALKTQCTPSTNRRVRRWEHEAVL
EEMQHRLNQAPEMMRVRKRTVEHPFGTLKQWMGATHFLTRKLNGVSAEMSLNVLAYNLKRVMKIIGTEGLLKAMAA

 

Blast result :
Comments
ISPmo1 is 87% aa similar to ISPa7.
References
1] Dongsheng Zhou (2016) Direct submission.
2] Wu,S. and Sun,C. (2016) Direct submission GenBank.