ISVa10

  • Family ISL3
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
ND Vibrio anguillarum
Vibrio anguillarum
Vibrio anguillarum VIB43 (O1)
DNA section
IS Length : 1349 bp

Ends


IR Length : 19/22

IRL : GGCTCTTCTCCGCTTTCATGAGTCTGTATGCACAGGCTCATTCATCATAA
IRR : GGCTCTTCTCCGCTTAGGTGAGCTTGATATTTGGGTAAAAAGTTGAGTGT

Insertion site


Left flankDirect repeatRight flankDR Length
TTTCAGATAACTTTTTCTATTCCAAAT7
CTGTTCATGAGAAAAAATAGCTGAAAA7
ATCACACATACATTTTCTAATCTAAAC7
TTTTGCAGTACAAAATGTTATCCGAAC7
ATAGGGATAAAAATAAGTAACTAGAGC7
GTTTGCCATACATCTACTAATTTATTG7
TGGGTGATTACTCCGGCTATCTACAAA7
TTGCGGATAAGAATATGTATGCCATGA7
TAAAAATAAGGGTATTGGTA0
CAACGAACATAAAACATTAA0

DNA sequence

GGCTCTTCTCCGCTTTCATGAGTCTGTATGCACAGGCTCATTCATCATAATCACATGATTTATAATGCTTATTTTAAAAATAAGTCAGTAGTCTATTTTG
TCGTCTTTGTCTTCCTCGTTATTTAGCTTTAAAGGCCAGTGTGTTGAATCTTGTTCAATAGAAGAAATGTCCCAAGGCGTACTCGTTCGCTGTCGTCGAG
ATCGTAGGTATAAAGTCAAAGAGCCAATATCAGGGACTTCCTGCACCGTCGATCACTACGTTAAAAGACGTCTTCAAGATTTACCTGTGAGTGGGCGACC
TTGTACGATTGAGGTTGAGCTGGCTAAAACTAGAGACAAAGAAGGACGACGGTTGATCGAAGAGACTGAATATGTGGCTAAAGGTGGTCGTTATACCGCT
CGCTTTTGCAAGTTCATCAGTGGGTTATGTCGCCATATGAGCATACATGCCGTCTCTCAACATTTAGGAATCCGCTGGGAAACAGTAAAAAATATCGATA
GGGAATACTTGCGTTCAAGCCTACCAGCATTAGACCCCGAGAAACTGAATAACTTGGTTCATATTGGCGTCGATGAAGTTGCCAGAGCCAAGAGACACGA
TTATATGACGGTTGTTTATGACCTCGTCTCTGGGCATTTAATTTGGGTTGAACATGGCCGAAAAGCAGAAGTTCTGATCTCCTTCTTTGAGCAACTATCA
GAAGAAACCAAATCAGGAATCAAAGCAGTATCAATGGATATGGGCCAGTCTTACCAGTCGGCGGTCAGGAAAATGCTTCCCAATGCTGATATTGTTTTTG
ACCGATTTCATGTCATGCAGAACTACTGCATCTTAATCAAAAAAGAGAGAGCAAAAGCTTTTAGAAATGGCTCTCACGACGAAAAAAAAATGTTGAAAGG
AACGCTCTTCCTCCTACTGAAAAACGCTCACAAATTGGATGATAGGCAGTCTGACAGACTTGATGACTTACTTGAGAGCAACAAGACTTTGTGCGTTGTT
TACATGCTCAAAGAGCAGCTACAAGCCATATGGGATGAACCCGATTACGAAACAATGGTGGCAGCTCTAGAAGCTTGGTGTCGTCTTGCCAAATCGACCA
GAATACTTTCCTTAATTAATTTTGCCGATGCTTTATTGGAAAGAAAAGTGGGTATTTGTAACTACGGAAAATACAAACTGACTAACGCTCGGGTAGAAGC
AGGTAATGTCTCGATTGGCTTACTCAGACGAAGGGCAAGAGGGGTGAGAGATACAGACTATTTCAAATTGAAGATCAGACAAACATCGGTTCCCGATACA
CACTCAACTTTTTACCCAAATATCAAGCTCACCTAAGCGGAGAAGAGCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1170 bp389 aa1671336+No
ORF function : Transposase
Description :

ORF sequence :

MSQGVLVRCRRDRRYKVKEPISGTSCTVDHYVKRRLQDLPVSGRPCTIEVELAKTRDKEGRRLIEETEYVAKGGRYTARFCKFISGLCRHMSIHAVSQHL
GIRWETVKNIDREYLRSSLPALDPEKLNNLVHIGVDEVARAKRHDYMTVVYDLVSGHLIWVEHGRKAEVLISFFEQLSEETKSGIKAVSMDMGQSYQSAV
RKMLPNADIVFDRFHVMQNYCILIKKERAKAFRNGSHDEKKMLKGTLFLLLKNAHKLDDRQSDRLDDLLESNKTLCVVYMLKEQLQAIWDEPDYETMVAA
LEAWCRLAKSTRILSLINFADALLERKVGICNYGKYKLTNARVEAGNVSIGLLRRRARGVRDTDYFKLKIRQTSVPDTHSTFYPNIKLT

 

Blast result :
Comments
ISVa10 is 91% aa similar to ISShha2.
References
1] Holm K.O. (2016) Direct submisison to ISfinder
2] Frans I. (2013) PLoS One. Aug 6;8(8):e70477. doi: 10.1371
3] Grisez L. (1995) Appl Environ Microbiol. Dec; 61(12):4367-73