ISVa10
- Family ISL3
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
ND | Vibrio anguillarum | Vibrio anguillarum Vibrio anguillarum VIB43 (O1) |
DNA section
IS Length : 1349 bp
Ends
IR Length : 19/22
IRL : GGCTCTTCTCCGCTTTCATGAGTCTGTATGCACAGGCTCATTCATCATAA
IRR : GGCTCTTCTCCGCTTAGGTGAGCTTGATATTTGGGTAAAAAGTTGAGTGT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TTTCAGATAA | CTTTTTC | TATTCCAAAT | 7 |
CTGTTCATGA | GAAAAAA | TAGCTGAAAA | 7 |
ATCACACATA | CATTTTC | TAATCTAAAC | 7 |
TTTTGCAGTA | CAAAATG | TTATCCGAAC | 7 |
ATAGGGATAA | AAATAAG | TAACTAGAGC | 7 |
GTTTGCCATA | CATCTAC | TAATTTATTG | 7 |
TGGGTGATTA | CTCCGGC | TATCTACAAA | 7 |
TTGCGGATAA | GAATATG | TATGCCATGA | 7 |
TAAAAATAAG | GGTATTGGTA | 0 | |
CAACGAACAT | AAAACATTAA | 0 |
DNA sequence
GGCTCTTCTCCGCTTTCATGAGTCTGTATGCACAGGCTCATTCATCATAATCACATGATTTATAATGCTTATTTTAAAAATAAGTCAGTAGTCTATTTTG
TCGTCTTTGTCTTCCTCGTTATTTAGCTTTAAAGGCCAGTGTGTTGAATCTTGTTCAATAGAAGAAATGTCCCAAGGCGTACTCGTTCGCTGTCGTCGAG
ATCGTAGGTATAAAGTCAAAGAGCCAATATCAGGGACTTCCTGCACCGTCGATCACTACGTTAAAAGACGTCTTCAAGATTTACCTGTGAGTGGGCGACC
TTGTACGATTGAGGTTGAGCTGGCTAAAACTAGAGACAAAGAAGGACGACGGTTGATCGAAGAGACTGAATATGTGGCTAAAGGTGGTCGTTATACCGCT
CGCTTTTGCAAGTTCATCAGTGGGTTATGTCGCCATATGAGCATACATGCCGTCTCTCAACATTTAGGAATCCGCTGGGAAACAGTAAAAAATATCGATA
GGGAATACTTGCGTTCAAGCCTACCAGCATTAGACCCCGAGAAACTGAATAACTTGGTTCATATTGGCGTCGATGAAGTTGCCAGAGCCAAGAGACACGA
TTATATGACGGTTGTTTATGACCTCGTCTCTGGGCATTTAATTTGGGTTGAACATGGCCGAAAAGCAGAAGTTCTGATCTCCTTCTTTGAGCAACTATCA
GAAGAAACCAAATCAGGAATCAAAGCAGTATCAATGGATATGGGCCAGTCTTACCAGTCGGCGGTCAGGAAAATGCTTCCCAATGCTGATATTGTTTTTG
ACCGATTTCATGTCATGCAGAACTACTGCATCTTAATCAAAAAAGAGAGAGCAAAAGCTTTTAGAAATGGCTCTCACGACGAAAAAAAAATGTTGAAAGG
AACGCTCTTCCTCCTACTGAAAAACGCTCACAAATTGGATGATAGGCAGTCTGACAGACTTGATGACTTACTTGAGAGCAACAAGACTTTGTGCGTTGTT
TACATGCTCAAAGAGCAGCTACAAGCCATATGGGATGAACCCGATTACGAAACAATGGTGGCAGCTCTAGAAGCTTGGTGTCGTCTTGCCAAATCGACCA
GAATACTTTCCTTAATTAATTTTGCCGATGCTTTATTGGAAAGAAAAGTGGGTATTTGTAACTACGGAAAATACAAACTGACTAACGCTCGGGTAGAAGC
AGGTAATGTCTCGATTGGCTTACTCAGACGAAGGGCAAGAGGGGTGAGAGATACAGACTATTTCAAATTGAAGATCAGACAAACATCGGTTCCCGATACA
CACTCAACTTTTTACCCAAATATCAAGCTCACCTAAGCGGAGAAGAGCC
TCGTCTTTGTCTTCCTCGTTATTTAGCTTTAAAGGCCAGTGTGTTGAATCTTGTTCAATAGAAGAAATGTCCCAAGGCGTACTCGTTCGCTGTCGTCGAG
ATCGTAGGTATAAAGTCAAAGAGCCAATATCAGGGACTTCCTGCACCGTCGATCACTACGTTAAAAGACGTCTTCAAGATTTACCTGTGAGTGGGCGACC
TTGTACGATTGAGGTTGAGCTGGCTAAAACTAGAGACAAAGAAGGACGACGGTTGATCGAAGAGACTGAATATGTGGCTAAAGGTGGTCGTTATACCGCT
CGCTTTTGCAAGTTCATCAGTGGGTTATGTCGCCATATGAGCATACATGCCGTCTCTCAACATTTAGGAATCCGCTGGGAAACAGTAAAAAATATCGATA
GGGAATACTTGCGTTCAAGCCTACCAGCATTAGACCCCGAGAAACTGAATAACTTGGTTCATATTGGCGTCGATGAAGTTGCCAGAGCCAAGAGACACGA
TTATATGACGGTTGTTTATGACCTCGTCTCTGGGCATTTAATTTGGGTTGAACATGGCCGAAAAGCAGAAGTTCTGATCTCCTTCTTTGAGCAACTATCA
GAAGAAACCAAATCAGGAATCAAAGCAGTATCAATGGATATGGGCCAGTCTTACCAGTCGGCGGTCAGGAAAATGCTTCCCAATGCTGATATTGTTTTTG
ACCGATTTCATGTCATGCAGAACTACTGCATCTTAATCAAAAAAGAGAGAGCAAAAGCTTTTAGAAATGGCTCTCACGACGAAAAAAAAATGTTGAAAGG
AACGCTCTTCCTCCTACTGAAAAACGCTCACAAATTGGATGATAGGCAGTCTGACAGACTTGATGACTTACTTGAGAGCAACAAGACTTTGTGCGTTGTT
TACATGCTCAAAGAGCAGCTACAAGCCATATGGGATGAACCCGATTACGAAACAATGGTGGCAGCTCTAGAAGCTTGGTGTCGTCTTGCCAAATCGACCA
GAATACTTTCCTTAATTAATTTTGCCGATGCTTTATTGGAAAGAAAAGTGGGTATTTGTAACTACGGAAAATACAAACTGACTAACGCTCGGGTAGAAGC
AGGTAATGTCTCGATTGGCTTACTCAGACGAAGGGCAAGAGGGGTGAGAGATACAGACTATTTCAAATTGAAGATCAGACAAACATCGGTTCCCGATACA
CACTCAACTTTTTACCCAAATATCAAGCTCACCTAAGCGGAGAAGAGCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1170 bp | 389 aa | 167 | 1336 | + | No |
Description :
ORF sequence :
MSQGVLVRCRRDRRYKVKEPISGTSCTVDHYVKRRLQDLPVSGRPCTIEVELAKTRDKEGRRLIEETEYVAKGGRYTARFCKFISGLCRHMSIHAVSQHL
GIRWETVKNIDREYLRSSLPALDPEKLNNLVHIGVDEVARAKRHDYMTVVYDLVSGHLIWVEHGRKAEVLISFFEQLSEETKSGIKAVSMDMGQSYQSAV
RKMLPNADIVFDRFHVMQNYCILIKKERAKAFRNGSHDEKKMLKGTLFLLLKNAHKLDDRQSDRLDDLLESNKTLCVVYMLKEQLQAIWDEPDYETMVAA
LEAWCRLAKSTRILSLINFADALLERKVGICNYGKYKLTNARVEAGNVSIGLLRRRARGVRDTDYFKLKIRQTSVPDTHSTFYPNIKLT
GIRWETVKNIDREYLRSSLPALDPEKLNNLVHIGVDEVARAKRHDYMTVVYDLVSGHLIWVEHGRKAEVLISFFEQLSEETKSGIKAVSMDMGQSYQSAV
RKMLPNADIVFDRFHVMQNYCILIKKERAKAFRNGSHDEKKMLKGTLFLLLKNAHKLDDRQSDRLDDLLESNKTLCVVYMLKEQLQAIWDEPDYETMVAA
LEAWCRLAKSTRILSLINFADALLERKVGICNYGKYKLTNARVEAGNVSIGLLRRRARGVRDTDYFKLKIRQTSVPDTHSTFYPNIKLT
Blast result :
Comments
ISVa10 is 91% aa similar to ISShha2.
References
1] Holm K.O. (2016) Direct submisison to ISfinder
2] Frans I. (2013) PLoS One. Aug 6;8(8):e70477. doi: 10.1371
3] Grisez L. (1995) Appl Environ Microbiol. Dec; 61(12):4367-73
2] Frans I. (2013) PLoS One. Aug 6;8(8):e70477. doi: 10.1371
3] Grisez L. (1995) Appl Environ Microbiol. Dec; 61(12):4367-73