ISParac1

  • Family IS5
  • Group IS903
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
CP008941 ND Paracaedibacter acanthamoebae
Paracaedibacter acanthamoebae PRA3
Candidatus Paracaedibacter acanthamoebae PRA3
DNA section
IS Length : 1101 bp

Ends


IR Length : 17

IRL : GGCGTTGTTGCGTAAATAGAAAAGGTTGTCAATAAAAGGTAAATGGAAGT
IRR : GGCGTTGTTGCGTAAATGGGAAGCAAGAACAAACTCTCCCTTTTTCCCAA

Insertion site


Left flankDirect repeatRight flankDR Length
CACACAGCTTGACTAATAATCTTTTTAGCAGCAGCGTCG0
GCTCGCCATTTATAGAACGTGCTAAGCTTAAATCCTTAC0
ATTCAATATCAATGCCTACTTCTTTGACCAGGTTAGTAA0
AGAAGCGATTTATCAATCTCACAAATCTCTTTACCATTC0

DNA sequence

GGCGTTGTTGCGTAAATAGAAAAGGTTGTCAATAAAAGGTAAATGGAAGTATCTTTTTTAAAATAAAAAGGATGACCTATGCCTTATAAAGAACGCATTA
GGCGCTCAGGCGCTATTCATAAACGTCAAAAGCACTATCGCCTACAGAATTGGCCAGACTATAATCAAGCTTTAATAAACAGAGGAGATCTCACTTTATG
GCTTTGTGAGGATCTTCACCATAACTGGTACGCGCAAAAATCCCCTATTCCTAAAAAAGGGCGGCCCCTTCATTATTCTGATCATGCCATTACACTCATG
CTAACATTAAGGCTCATCTTTAAACAAAAACTTAGGCAAACTCAAGGGGTGGTCAAGTCATTGTTTCACCTCCTTGGCCTTCAATTGGATGTTCCTAACT
ACACGAGACTATCACGCCGCGGAACTGTTCCTTTAATCACACGCCACTTAGAAAAAATGGATGAACCGGGTCATCTTGTCATTGATAGTACAGGTATTAA
AGTATTTGGAGAAAGTGAGTGGCTTGAAACAAAATATGGCAAACAGTACAAACGCAAAGTCTGGCGTAAGCTTCACCTTGGCATTAACAGCAAGGGATTC
ATTGTTTCTCGGATAATGACAAGTCATTTAACAGATGATCGATCCTGCTTAGACGCTCACCTTAAGCAGGCTGATGTAACAAAAGTAAAAGAGCTTATTG
CTGATGCGGGCTACGATGGTCAAAATGTTTACAGCCAACTGGCATCAGTCAACATTAAACCCATTATTCCTCCAGCTCGAGGATCTCCTTCACTGTCAAA
AGAGCACTGCTCTGTTAGACAAAAGGGTATTAATTACATTGATAAAAAGGGACTATACGCCTGGCAAACAAAAAATGATTATGGCAGGAGAACAAAAGTA
GAAAATACGATATACCGCTATAAAGAGATGATCGGTCGTAAGCTTAATGCCAGGCTATGGGATAACCAAGATGCCGAATTACATCTTGGGTGTTTCATTT
TGAACACTTTTACTAATCTTGGCATGCCGGAATCAGTTAAAATCTAATAATTTTGGGAAAAAGGGAGAGTTTGTTCTTGCTTCCCATTTACGCAACAACG
CC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
969 bp322 aa791047+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MPYKERIRRSGAIHKRQKHYRLQNWPDYNQALINRGDLTLWLCEDLHHNWYAQKSPIPKKGRPLHYSDHAITLMLTLRLIFKQKLRQTQGVVKSLFHLLG
LQLDVPNYTRLSRRGTVPLITRHLEKMDEPGHLVIDSTGIKVFGESEWLETKYGKQYKRKVWRKLHLGINSKGFIVSRIMTSHLTDDRSCLDAHLKQADV
TKVKELIADAGYDGQNVYSQLASVNIKPIIPPARGSPSLSKEHCSVRQKGINYIDKKGLYAWQTKNDYGRRTKVENTIYRYKEMIGRKLNARLWDNQDAE
LHLGCFILNTFTNLGMPESVKI

 

Blast result :
Comments
ISParac1 is 55% aa similar to ISAli17.
References
1] ISfinder annotation (2016)
2] Wang,Z. and Wu,M. (2014) Direct submission GenBank.