ISRsu1

  • Family IS5
  • Group IS903
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
AP014800 ND Rhodovulum sulfidophilum
Rhodovulum sulfidophilum
DNA section
IS Length : 1050 bp

Ends


IR Length : 17/18

IRL : GGCGTTGTTGCGCAAATCCTAGTGGAGATTCACTTAGTGAATCCTGACGG
IRR : GGCGTTGTTGCGCAACTCAAGTTCGGGGATGAGTCTGCCCTTTCCCACCT

Insertion site


Left flankDirect repeatRight flankDR Length
CACGATCCCGGCGTCGCGCCGAACCTCCT9
ACTGACCGGCCAACGGATCAGCCATTGGA9
GCCGCTGTCACACCGCCATCATCGGGCAT9
TGGTTTTGGTCAGGAACTCCGTTGGTGAG9
CTGCACTTTCGCATCGAATGGCGAAAACCCAAGATTTTTT0
CAAGAACGGTGGTAAGGACGCATCCATGGCGGCGTCCTCC0
TTGTAGTGGAACAGCCAAGCCTTGTCCTCCAACGCCCGTT0
CACCTATCCGGTTCTACTTGGCTCATGGGGCCCCTTGCGG0
ATCGCATGAGCGTTCTGGAACGTGCGTGACCTCAGGCTGT0
ACCCCTTGTCGATCCAGATGCATCCTGCCGTCTGACACGG0
CCGAAAATCCCCCGCCCACCCAGCCATTCCATAAAATCT0
CCACATCGAGGGCTCATGGGCCCCCGGCGCGTGGCGTCAT0

DNA sequence

GGCGTTGTTGCGCAAATCCTAGTGGAGATTCACTTAGTGAATCCTGACGGTTAGATCGGGCGCATGCCGAAGCCCGCACCCACCCGCTACCGCACGACGA
ACTGGTCAACCTACAACGCGTCGCTCAGGCAGCGGGGCTCGTTCTCGGTCTGGTTTGATCCGGACATGGTGTGGCATGCGGAGAAGTCAGGCAAGCGGGG
ACGCCCCGAGACCTTCTCGGATGCGGCGATCCAAACCTGCCTGACGCTCAAGGTGCTTTTCGGGCTTCCGCTCCGCCAGACGGTGGGACTTGTCGAGAGC
CTGATCCGGATGGCCGGACTCGATTGGCCGGTTCCGGATTTTTCGACCTTGTGCCGTCGCCAGGCGCGGCTCGCCGTGCAGATCCCGTATCGCGCCCCCG
GGCAGCCGCTGAACCTGTTGATCGACAGCACCGGTATCAAGTTCCGTGGCGATGGTGAGTGGCTGGCCCGCAAGCATGGAGCCTCGCGCCGCAGGCAATG
GCGGAAAGTACATCTCGCCATGGACGCAGGCACGGGAGACGTCCGCGCTGTCGAGTTCACTTCCAGCCGTCAGGGCGACAGCCCGCTGCTGCCAGAGTTG
TTGTCCCAGATTCCGCCCGACGAACCGATCGATACCGTCACCGCCGACGGTGCCTATGACACGCGACGGTGTCATGGGGCGATCATCGAACGAGGTGCCG
ATGCGATCATACCCATCCGTCGCAACGGACGCGCCTGGAAGGCAGACTGTCCCGCGGCCATTGCGCGAAACGAGATTCTGCGTGCAACCCGGCACCTGGG
CCGGGCGCTCTGGAAGAAGTGGGCGCGATACCATGTCCGCAGCAGGGTAGAGGCCAGGATGAACTGCCTCAAGCGCTTTGGGGAGCGGATCATGTCACAA
GACCCCGAACGCCAAACCGCCGAAATTCACATCCGCATCGCAATCATGAACACCTTCTCGGCCCTCGGCAGGGCCGAGATCGAAGCCGTCGCCTGAACTC
AGGTGGGAAAGGGCAGACTCATCCCCGAACTTGAGTTGCGCAACAACGCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
933 bp310 aa64996+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MPKPAPTRYRTTNWSTYNASLRQRGSFSVWFDPDMVWHAEKSGKRGRPETFSDAAIQTCLTLKVLFGLPLRQTVGLVESLIRMAGLDWPVPDFSTLCRRQ
ARLAVQIPYRAPGQPLNLLIDSTGIKFRGDGEWLARKHGASRRRQWRKVHLAMDAGTGDVRAVEFTSSRQGDSPLLPELLSQIPPDEPIDTVTADGAYDT
RRCHGAIIERGADAIIPIRRNGRAWKADCPAAIARNEILRATRHLGRALWKKWARYHVRSRVEARMNCLKRFGERIMSQDPERQTAEIHIRIAIMNTFSA
LGRAEIEAVA

 

Blast result :
Comments
ISRsu1 is 84% aa similar to ISDsh5.
References
1] ISfinder annotation (2016)
2] Nagao,N., Hirose,Y., Misawa,N., Ohtsubo,Y., Umekage,S. and Kikuchi,Y. (2015) Genome Announc 3 (2).