ISRsu1
- Family IS5
- Group IS903
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
AP014800 | ND | Rhodovulum sulfidophilum | Rhodovulum sulfidophilum |
DNA section
IS Length : 1050 bp
Ends
IR Length : 17/18
IRL : GGCGTTGTTGCGCAAATCCTAGTGGAGATTCACTTAGTGAATCCTGACGG
IRR : GGCGTTGTTGCGCAACTCAAGTTCGGGGATGAGTCTGCCCTTTCCCACCT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
CACGATCCCG | GCGTCGCGC | CGAACCTCCT | 9 |
ACTGACCGGC | CAACGGATC | AGCCATTGGA | 9 |
GCCGCTGTCA | CACCGCCAT | CATCGGGCAT | 9 |
TGGTTTTGGT | CAGGAACTC | CGTTGGTGAG | 9 |
CTGCACTTTCGCATCGAATG | GCGAAAACCCAAGATTTTTT | 0 | |
CAAGAACGGTGGTAAGGACG | CATCCATGGCGGCGTCCTCC | 0 | |
TTGTAGTGGAACAGCCAAGC | CTTGTCCTCCAACGCCCGTT | 0 | |
CACCTATCCGGTTCTACTTG | GCTCATGGGGCCCCTTGCGG | 0 | |
ATCGCATGAGCGTTCTGGAA | CGTGCGTGACCTCAGGCTGT | 0 | |
ACCCCTTGTCGATCCAGATG | CATCCTGCCGTCTGACACGG | 0 | |
CCGAAAATCCCCCGCCCACC | CAGCCATTCCATAAAATCT | 0 | |
CCACATCGAGGGCTCATGGG | CCCCCGGCGCGTGGCGTCAT | 0 |
DNA sequence
GGCGTTGTTGCGCAAATCCTAGTGGAGATTCACTTAGTGAATCCTGACGGTTAGATCGGGCGCATGCCGAAGCCCGCACCCACCCGCTACCGCACGACGA
ACTGGTCAACCTACAACGCGTCGCTCAGGCAGCGGGGCTCGTTCTCGGTCTGGTTTGATCCGGACATGGTGTGGCATGCGGAGAAGTCAGGCAAGCGGGG
ACGCCCCGAGACCTTCTCGGATGCGGCGATCCAAACCTGCCTGACGCTCAAGGTGCTTTTCGGGCTTCCGCTCCGCCAGACGGTGGGACTTGTCGAGAGC
CTGATCCGGATGGCCGGACTCGATTGGCCGGTTCCGGATTTTTCGACCTTGTGCCGTCGCCAGGCGCGGCTCGCCGTGCAGATCCCGTATCGCGCCCCCG
GGCAGCCGCTGAACCTGTTGATCGACAGCACCGGTATCAAGTTCCGTGGCGATGGTGAGTGGCTGGCCCGCAAGCATGGAGCCTCGCGCCGCAGGCAATG
GCGGAAAGTACATCTCGCCATGGACGCAGGCACGGGAGACGTCCGCGCTGTCGAGTTCACTTCCAGCCGTCAGGGCGACAGCCCGCTGCTGCCAGAGTTG
TTGTCCCAGATTCCGCCCGACGAACCGATCGATACCGTCACCGCCGACGGTGCCTATGACACGCGACGGTGTCATGGGGCGATCATCGAACGAGGTGCCG
ATGCGATCATACCCATCCGTCGCAACGGACGCGCCTGGAAGGCAGACTGTCCCGCGGCCATTGCGCGAAACGAGATTCTGCGTGCAACCCGGCACCTGGG
CCGGGCGCTCTGGAAGAAGTGGGCGCGATACCATGTCCGCAGCAGGGTAGAGGCCAGGATGAACTGCCTCAAGCGCTTTGGGGAGCGGATCATGTCACAA
GACCCCGAACGCCAAACCGCCGAAATTCACATCCGCATCGCAATCATGAACACCTTCTCGGCCCTCGGCAGGGCCGAGATCGAAGCCGTCGCCTGAACTC
AGGTGGGAAAGGGCAGACTCATCCCCGAACTTGAGTTGCGCAACAACGCC
ACTGGTCAACCTACAACGCGTCGCTCAGGCAGCGGGGCTCGTTCTCGGTCTGGTTTGATCCGGACATGGTGTGGCATGCGGAGAAGTCAGGCAAGCGGGG
ACGCCCCGAGACCTTCTCGGATGCGGCGATCCAAACCTGCCTGACGCTCAAGGTGCTTTTCGGGCTTCCGCTCCGCCAGACGGTGGGACTTGTCGAGAGC
CTGATCCGGATGGCCGGACTCGATTGGCCGGTTCCGGATTTTTCGACCTTGTGCCGTCGCCAGGCGCGGCTCGCCGTGCAGATCCCGTATCGCGCCCCCG
GGCAGCCGCTGAACCTGTTGATCGACAGCACCGGTATCAAGTTCCGTGGCGATGGTGAGTGGCTGGCCCGCAAGCATGGAGCCTCGCGCCGCAGGCAATG
GCGGAAAGTACATCTCGCCATGGACGCAGGCACGGGAGACGTCCGCGCTGTCGAGTTCACTTCCAGCCGTCAGGGCGACAGCCCGCTGCTGCCAGAGTTG
TTGTCCCAGATTCCGCCCGACGAACCGATCGATACCGTCACCGCCGACGGTGCCTATGACACGCGACGGTGTCATGGGGCGATCATCGAACGAGGTGCCG
ATGCGATCATACCCATCCGTCGCAACGGACGCGCCTGGAAGGCAGACTGTCCCGCGGCCATTGCGCGAAACGAGATTCTGCGTGCAACCCGGCACCTGGG
CCGGGCGCTCTGGAAGAAGTGGGCGCGATACCATGTCCGCAGCAGGGTAGAGGCCAGGATGAACTGCCTCAAGCGCTTTGGGGAGCGGATCATGTCACAA
GACCCCGAACGCCAAACCGCCGAAATTCACATCCGCATCGCAATCATGAACACCTTCTCGGCCCTCGGCAGGGCCGAGATCGAAGCCGTCGCCTGAACTC
AGGTGGGAAAGGGCAGACTCATCCCCGAACTTGAGTTGCGCAACAACGCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
933 bp | 310 aa | 64 | 996 | + | No |
Chemistry : DDE
ORF sequence :
MPKPAPTRYRTTNWSTYNASLRQRGSFSVWFDPDMVWHAEKSGKRGRPETFSDAAIQTCLTLKVLFGLPLRQTVGLVESLIRMAGLDWPVPDFSTLCRRQ
ARLAVQIPYRAPGQPLNLLIDSTGIKFRGDGEWLARKHGASRRRQWRKVHLAMDAGTGDVRAVEFTSSRQGDSPLLPELLSQIPPDEPIDTVTADGAYDT
RRCHGAIIERGADAIIPIRRNGRAWKADCPAAIARNEILRATRHLGRALWKKWARYHVRSRVEARMNCLKRFGERIMSQDPERQTAEIHIRIAIMNTFSA
LGRAEIEAVA
ARLAVQIPYRAPGQPLNLLIDSTGIKFRGDGEWLARKHGASRRRQWRKVHLAMDAGTGDVRAVEFTSSRQGDSPLLPELLSQIPPDEPIDTVTADGAYDT
RRCHGAIIERGADAIIPIRRNGRAWKADCPAAIARNEILRATRHLGRALWKKWARYHVRSRVEARMNCLKRFGERIMSQDPERQTAEIHIRIAIMNTFSA
LGRAEIEAVA
Blast result :
Comments
ISRsu1 is 84% aa similar to ISDsh5.
References
1] ISfinder annotation (2016)
2] Nagao,N., Hirose,Y., Misawa,N., Ohtsubo,Y., Umekage,S. and Kikuchi,Y. (2015) Genome Announc 3 (2).
2] Nagao,N., Hirose,Y., Misawa,N., Ohtsubo,Y., Umekage,S. and Kikuchi,Y. (2015) Genome Announc 3 (2).