ISLesp5

  • Family IS5
  • Group IS903
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
AWNH01000081 ND Leptolyngbya sp.
Leptolyngbya sp. Heron Island J
DNA section
IS Length : 1066 bp

Ends


IR Length : 16

IRL : GGCTTTGGTGCGTGAAAAAGGGCGTTGCAGAGTCATAGGAGCCGGTAACG
IRR : GGCTTTGGTGCGTGAATATTGCGGCAGACAGATCGGACCTGTGGGATATC

Insertion site


Left flankDirect repeatRight flankDR Length
AGTACTTTTAGCACACTATGCAATAATTC9

DNA sequence

GGCTTTGGTGCGTGAAAAAGGGCGTTGCAGAGTCATAGGAGCCGGTAACGTGTAGTTACCACACAAACACGGTCCCGATGAAACGCTCTTACAAACTCCG
CAACTGGTCTGAGTATACCGCCGCCTTGGTGAAGCGAGGAAGCCTGACACTATGGCTTAGTGAGGAGGTGATTGAAACGTGGGAAAACACTCAAAAGACA
GGCAACCCTGGAGCCTCTAAGACCTATAGTGACTTAGCCATTCAGACATTACTCACCTTGCGAGTGATCTATGGACTAGCCTTGCGTCAAACCATCGGCT
TTGCAGGGTCTATTTTTGAACTGATGGGGGTATCGGTGGCCTTACCAGTGCATACAACGCTATCTCGTCGTCAAAAGACTTTAATCATTGATTTGCCGAC
GAAACCCGCCACCGGGGGACGTCATGTGGTGGTCGACAGTACCGGCATTAAAGTCTACGGAGAAGGTGAATGGAAAACGCGGCAGCATGGGGTAAGCAAA
CGGCGCACATGGCTCAAACTACATCTGGGTGTCGATGAGCAAACAGGCGAGATCCTAGCGGCAGTCGTGACCTCAAACGCGATTAGCGATGGAGAGATAT
TGCCCGCCCTCCTCGACCAAATTCCAGACGAGATTGACCAAGTCAGTGCCGATGGTGCATACGACCGCACCTATTGCTACGATGCCATTGATGAGCGGGA
AGCCACTGCCGCAATTCCACCTCGCAAAGATGCCAAAATTTGGTTTCATGGCAACCGTAAACAAGAGCCTCATCCACGAGATGAAAACTTAAGAGCGATT
CGCAAACAGGGGCGTTCTAACTGGAAAGAAGAGATTAACTATCATCGACGCTCTCTGAGTGAAACGGCCATGTATCGAGTCAAAACCATTTTCACAGGTG
AGGTATCTGCACGGTGTTTTGAAAATCAAACGACAGAATTAATGTTGGAATGTTCTATTATCAATAAGTTCAGTCACTTAGGAATGCCTGATAGCTACCT
TGTTGAAGGCTAAGTCGATATCCCACAGGTCCGATCTGTCTGCCGCAATATTCACGCACCAAAGCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
936 bp311 aa781013+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MKRSYKLRNWSEYTAALVKRGSLTLWLSEEVIETWENTQKTGNPGASKTYSDLAIQTLLTLRVIYGLALRQTIGFAGSIFELMGVSVALPVHTTLSRRQK
TLIIDLPTKPATGGRHVVVDSTGIKVYGEGEWKTRQHGVSKRRTWLKLHLGVDEQTGEILAAVVTSNAISDGEILPALLDQIPDEIDQVSADGAYDRTYC
YDAIDEREATAAIPPRKDAKIWFHGNRKQEPHPRDENLRAIRKQGRSNWKEEINYHRRSLSETAMYRVKTIFTGEVSARCFENQTTELMLECSIINKFSH
LGMPDSYLVEG

 

Blast result :
Comments
ISLesp5 is 75% aa similar to ISAcma6.
References
1] ISfinder annotation (2016)
2] Paul,R., Jinkerson,R.E., Buss,K., Steel,J., Mohr,R., Hess,W.R., Chen,M. and Fromme,P. (2013) Direct submission GenBank.