ISJca1

  • Family IS5
  • Group IS903
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
BAFH01000004 ND Jettenia caeni
Jettenia caeni
Candidatus Jettenia caeni
DNA section
IS Length : 1151 bp

Ends


IR Length : 19/20

IRL : GGCTTTGTTGCACAAAGCCGGATAAATATCTGATATACTAAGAGAATAAG
IRR : GGCTTTGTTGCACAAATCCGATAAAAAAGCAGTTTTTCCCTGTAGTATGC

Insertion site


Left flankDirect repeatRight flankDR Length
TAATTTTTCAGTCTGCTTGAGCAATTTGT9

DNA sequence

GGCTTTGTTGCACAAAGCCGGATAAATATCTGATATACTAAGAGAATAAGGGAAAGAGTACCATAAATTATTTTGTAGGATAAGTATATCAGTATGAAGC
AACAGAAACGGGACGTAAAGAAACTAGCAGGAACAGATAAAAGGCCGCTCCAAGAACAGAAAAAGAAGAAATCAAAGAAGGACTACCGGGTAAGAAACTG
GTCAGAGTATACAGAGGCATTAAGACAAAGAGGGTCTCTTGATGTATGGATAGACGAGGGGGTACAAGAGAAATGGAATGCAGAGCCAACGGGCCAAAGA
GGGTCTCCCCCTACGTATAGTGATCTGGCCATAACATCAACGCTTCAGTTGGGTATCGTATTTCATCAAAGACTTCGTCAAACAGAAGGATTAGTCAAAT
CACTGTTTCGGCTCATGAATATCCCTCTGAAGGTTCCTGATTATTCAACCCTGTCTCGAAGAGGTGAAACAGTGGGAATTTCTTTAGCGAAAGAGAAGAA
AGAGAATCTGGTATTAGTCCTTGATAGCAGTGGGTTAAAGGTCTATGGGGAAGGGGAATGGAAGGTAAGACAGCATGGATATACCAAGAGAAGAACATGG
AGAAAGATTCATTTGTCCATTACTCCTGATGGAGAGATAAGAGCACAAGAGCTTACCGAGAATAGTACTGGTGATTCAGAGGTAGTAGATAAGCTTCTAA
GCCAGGAAGAGTCAAGGATTGATACCTTTGCCGGTGATGGCTCCTATGATAAGAGGAAGGTCTATGAGAGTTGTAAGAGAAGAGGGATTCTCAGAATACT
TATTCCTCCGAGGAAGGATGCAAAGATATGGCAGCATGGCAACTGCAGTACAGAGCCACATGTCCGAGATGAGACGATAAGGCATATCAGAAGAACTTCC
CTAAGACAGTGGAAAGAGCGTGTTGGTTACCACGTCCGCTCTCTGGTTGAGAATGCGATATTTCGATTCAAAACCATCTTTGGCGATAGGCTTTATGCCA
GAAATCTTGCTCAACAAAGAACAGAAGTAGGTATCAAGGCATCTGTTTTAAACTGTATGATGAAATTAGGAATGCCGGAAAGTTATGCGATCTCATAAAT
TGCATACTACAGGGAAAAACTGCTTTTTTATCGGATTTGTGCAACAAAGCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1005 bp334 aa941098+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MKQQKRDVKKLAGTDKRPLQEQKKKKSKKDYRVRNWSEYTEALRQRGSLDVWIDEGVQEKWNAEPTGQRGSPPTYSDLAITSTLQLGIVFHQRLRQTEGL
VKSLFRLMNIPLKVPDYSTLSRRGETVGISLAKEKKENLVLVLDSSGLKVYGEGEWKVRQHGYTKRRTWRKIHLSITPDGEIRAQELTENSTGDSEVVDK
LLSQEESRIDTFAGDGSYDKRKVYESCKRRGILRILIPPRKDAKIWQHGNCSTEPHVRDETIRHIRRTSLRQWKERVGYHVRSLVENAIFRFKTIFGDRL
YARNLAQQRTEVGIKASVLNCMMKLGMPESYAIS

 

Blast result :
Comments
ISJca1 is 64% aa similar to ISAcma6.
References
1] ISfinder annotation (2016)
2] Hira,D., Toh,H., Migita,C.T., Okubo,H., Nishiyama,T., Hattori,M., Furukawa,K. and Fujii,T. (2012) FEBS Lett. 586 (11), 1658-1663.