ISJca1
- Family IS5
- Group IS903
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
BAFH01000004 | ND | Jettenia caeni | Jettenia caeni Candidatus Jettenia caeni |
DNA section
IS Length : 1151 bp
Ends
IR Length : 19/20
IRL : GGCTTTGTTGCACAAAGCCGGATAAATATCTGATATACTAAGAGAATAAG
IRR : GGCTTTGTTGCACAAATCCGATAAAAAAGCAGTTTTTCCCTGTAGTATGC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TAATTTTTCA | GTCTGCTTG | AGCAATTTGT | 9 |
DNA sequence
GGCTTTGTTGCACAAAGCCGGATAAATATCTGATATACTAAGAGAATAAGGGAAAGAGTACCATAAATTATTTTGTAGGATAAGTATATCAGTATGAAGC
AACAGAAACGGGACGTAAAGAAACTAGCAGGAACAGATAAAAGGCCGCTCCAAGAACAGAAAAAGAAGAAATCAAAGAAGGACTACCGGGTAAGAAACTG
GTCAGAGTATACAGAGGCATTAAGACAAAGAGGGTCTCTTGATGTATGGATAGACGAGGGGGTACAAGAGAAATGGAATGCAGAGCCAACGGGCCAAAGA
GGGTCTCCCCCTACGTATAGTGATCTGGCCATAACATCAACGCTTCAGTTGGGTATCGTATTTCATCAAAGACTTCGTCAAACAGAAGGATTAGTCAAAT
CACTGTTTCGGCTCATGAATATCCCTCTGAAGGTTCCTGATTATTCAACCCTGTCTCGAAGAGGTGAAACAGTGGGAATTTCTTTAGCGAAAGAGAAGAA
AGAGAATCTGGTATTAGTCCTTGATAGCAGTGGGTTAAAGGTCTATGGGGAAGGGGAATGGAAGGTAAGACAGCATGGATATACCAAGAGAAGAACATGG
AGAAAGATTCATTTGTCCATTACTCCTGATGGAGAGATAAGAGCACAAGAGCTTACCGAGAATAGTACTGGTGATTCAGAGGTAGTAGATAAGCTTCTAA
GCCAGGAAGAGTCAAGGATTGATACCTTTGCCGGTGATGGCTCCTATGATAAGAGGAAGGTCTATGAGAGTTGTAAGAGAAGAGGGATTCTCAGAATACT
TATTCCTCCGAGGAAGGATGCAAAGATATGGCAGCATGGCAACTGCAGTACAGAGCCACATGTCCGAGATGAGACGATAAGGCATATCAGAAGAACTTCC
CTAAGACAGTGGAAAGAGCGTGTTGGTTACCACGTCCGCTCTCTGGTTGAGAATGCGATATTTCGATTCAAAACCATCTTTGGCGATAGGCTTTATGCCA
GAAATCTTGCTCAACAAAGAACAGAAGTAGGTATCAAGGCATCTGTTTTAAACTGTATGATGAAATTAGGAATGCCGGAAAGTTATGCGATCTCATAAAT
TGCATACTACAGGGAAAAACTGCTTTTTTATCGGATTTGTGCAACAAAGCC
AACAGAAACGGGACGTAAAGAAACTAGCAGGAACAGATAAAAGGCCGCTCCAAGAACAGAAAAAGAAGAAATCAAAGAAGGACTACCGGGTAAGAAACTG
GTCAGAGTATACAGAGGCATTAAGACAAAGAGGGTCTCTTGATGTATGGATAGACGAGGGGGTACAAGAGAAATGGAATGCAGAGCCAACGGGCCAAAGA
GGGTCTCCCCCTACGTATAGTGATCTGGCCATAACATCAACGCTTCAGTTGGGTATCGTATTTCATCAAAGACTTCGTCAAACAGAAGGATTAGTCAAAT
CACTGTTTCGGCTCATGAATATCCCTCTGAAGGTTCCTGATTATTCAACCCTGTCTCGAAGAGGTGAAACAGTGGGAATTTCTTTAGCGAAAGAGAAGAA
AGAGAATCTGGTATTAGTCCTTGATAGCAGTGGGTTAAAGGTCTATGGGGAAGGGGAATGGAAGGTAAGACAGCATGGATATACCAAGAGAAGAACATGG
AGAAAGATTCATTTGTCCATTACTCCTGATGGAGAGATAAGAGCACAAGAGCTTACCGAGAATAGTACTGGTGATTCAGAGGTAGTAGATAAGCTTCTAA
GCCAGGAAGAGTCAAGGATTGATACCTTTGCCGGTGATGGCTCCTATGATAAGAGGAAGGTCTATGAGAGTTGTAAGAGAAGAGGGATTCTCAGAATACT
TATTCCTCCGAGGAAGGATGCAAAGATATGGCAGCATGGCAACTGCAGTACAGAGCCACATGTCCGAGATGAGACGATAAGGCATATCAGAAGAACTTCC
CTAAGACAGTGGAAAGAGCGTGTTGGTTACCACGTCCGCTCTCTGGTTGAGAATGCGATATTTCGATTCAAAACCATCTTTGGCGATAGGCTTTATGCCA
GAAATCTTGCTCAACAAAGAACAGAAGTAGGTATCAAGGCATCTGTTTTAAACTGTATGATGAAATTAGGAATGCCGGAAAGTTATGCGATCTCATAAAT
TGCATACTACAGGGAAAAACTGCTTTTTTATCGGATTTGTGCAACAAAGCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1005 bp | 334 aa | 94 | 1098 | + | No |
Chemistry : DDE
ORF sequence :
MKQQKRDVKKLAGTDKRPLQEQKKKKSKKDYRVRNWSEYTEALRQRGSLDVWIDEGVQEKWNAEPTGQRGSPPTYSDLAITSTLQLGIVFHQRLRQTEGL
VKSLFRLMNIPLKVPDYSTLSRRGETVGISLAKEKKENLVLVLDSSGLKVYGEGEWKVRQHGYTKRRTWRKIHLSITPDGEIRAQELTENSTGDSEVVDK
LLSQEESRIDTFAGDGSYDKRKVYESCKRRGILRILIPPRKDAKIWQHGNCSTEPHVRDETIRHIRRTSLRQWKERVGYHVRSLVENAIFRFKTIFGDRL
YARNLAQQRTEVGIKASVLNCMMKLGMPESYAIS
VKSLFRLMNIPLKVPDYSTLSRRGETVGISLAKEKKENLVLVLDSSGLKVYGEGEWKVRQHGYTKRRTWRKIHLSITPDGEIRAQELTENSTGDSEVVDK
LLSQEESRIDTFAGDGSYDKRKVYESCKRRGILRILIPPRKDAKIWQHGNCSTEPHVRDETIRHIRRTSLRQWKERVGYHVRSLVENAIFRFKTIFGDRL
YARNLAQQRTEVGIKASVLNCMMKLGMPESYAIS
Blast result :
Comments
ISJca1 is 64% aa similar to ISAcma6.
References
1] ISfinder annotation (2016)
2] Hira,D., Toh,H., Migita,C.T., Okubo,H., Nishiyama,T., Hattori,M., Furukawa,K. and Fujii,T. (2012) FEBS Lett. 586 (11), 1658-1663.
2] Hira,D., Toh,H., Migita,C.T., Okubo,H., Nishiyama,T., Hattori,M., Furukawa,K. and Fujii,T. (2012) FEBS Lett. 586 (11), 1658-1663.