ISBvi8

  • Family IS5
  • Group IS903
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
LOWS01000086 ND Burkholderia vietnamiensis
Burkholderia vietnamiensis FL-5-2-10
DNA section
IS Length : 1037 bp

Ends


IR Length : 17

IRL : GGCTTTGTTGCACAAAACCGTGCTGCAGCGGGTAGGCTTGCGGGATGAGT
IRR : GGCTTTGTTGCACAAAAGACGTCCAGGACGGCATAGCCCCCACCCCAGAC

Insertion site


Left flankDirect repeatRight flankDR Length
GACGACAACTCAAAACCAGCGAAACCGTCGGCC0

DNA sequence

GGCTTTGTTGCACAAAACCGTGCTGCAGCGGGTAGGCTTGCGGGATGAGTGAAAGCAAGTACCCTCGGGGCAAGTACAAGACGACGAACTGGGCGGCCTA
CAACGCCGCGCTCAAGGCTCGCGGGTCATTGACCGTTTGGCTGAACAAGGACATGCAGTGGTACGCCCCGGCCAGCGGCAAGCGAGGGCGTCCGCAGAGG
TTCTCGGACGCTGCCATCCAGTTTTGCCTGAGCCTCAAATGCCTCTTTGGCCTGGCACTCCGCCAGAGCCTGGGGATGGTGGAAAGCTTGCTGCGCCTGG
CCGGTCTGGACTGTCAAGTGCCCGACTTCAGCACCGTGTGCCGCCGTCAAAAAAACCTGCAGGTACAACTGCCCTACCGCCCCAGCTCGTCAGCCCTGAG
CCTGCTGGTCGATAGCACCGGTATCAAGTTCCTGGGTGAAGGCGAATGGAAGTGCAAGAAGCACGGAGCCGAGTATCGCCGCCAGTGGCGCAAGGTGCAC
CTGGGTATCGATGCCCAAACGCTGGAAATCCGCGCCATCGAGGTCACCGATAACCGCATCGGGGATGCGCCCATGCTGCCCGAACTGCTCAGTCAAATTC
CAGAGGATGAGCCCATTGCCAGTGTGGGCGGTGATGGTGCCTACGATACCAAAGCGTGTCATGCGGCCATCGCCCGGCGTAACGCACACGCCCTCATTCC
ACCACGCAAGAATGCGCGGGCGTGGAAGAGCACGGAAGCGGGGGCGGCATCGCGCAACGAAGCCCTGCGCGCATGCCGACGCCTGGGTCGAACGATATGG
AAGAAGTGGAGTGGCTACCACCGGCGCAGCTTGGTGGAGACCACGATGTACTGCTTCAAGCGTCTGGGTGAGCGCGTGATGGCCAGGACGTTTGAGCGTC
AGGTGGCGGAGCTGCATATGCGTGTAGCCCTGTTCAACCGCTTCACCCAACTCGGACGGCCGCAGACCGTGGCTGTGGCATAAATCCGTCTGGGGTGGGG
GCTATGCCGTCCTGGACGTCTTTTGTGCAACAAAGCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
939 bp312 aa45983+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MSESKYPRGKYKTTNWAAYNAALKARGSLTVWLNKDMQWYAPASGKRGRPQRFSDAAIQFCLSLKCLFGLALRQSLGMVESLLRLAGLDCQVPDFSTVCR
RQKNLQVQLPYRPSSSALSLLVDSTGIKFLGEGEWKCKKHGAEYRRQWRKVHLGIDAQTLEIRAIEVTDNRIGDAPMLPELLSQIPEDEPIASVGGDGAY
DTKACHAAIARRNAHALIPPRKNARAWKSTEAGAASRNEALRACRRLGRTIWKKWSGYHRRSLVETTMYCFKRLGERVMARTFERQVAELHMRVALFNRF
TQLGRPQTVAVA

 

Blast result :
Comments
ISBvi8 is 87% aa similar to ISGNB1-1
References
1] ISfinder annotation (2016)
2] Sahl,J., Keim,P. and Wagner,D. (2015) Direct submission GenBank