ISBvi8
- Family IS5
- Group IS903
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
LOWS01000086 | ND | Burkholderia vietnamiensis | Burkholderia vietnamiensis FL-5-2-10 |
DNA section
IS Length : 1037 bp
Ends
IR Length : 17
IRL : GGCTTTGTTGCACAAAACCGTGCTGCAGCGGGTAGGCTTGCGGGATGAGT
IRR : GGCTTTGTTGCACAAAAGACGTCCAGGACGGCATAGCCCCCACCCCAGAC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GACGACAACTCAAAAC | CAGCGAAACCGTCGGCC | 0 |
DNA sequence
GGCTTTGTTGCACAAAACCGTGCTGCAGCGGGTAGGCTTGCGGGATGAGTGAAAGCAAGTACCCTCGGGGCAAGTACAAGACGACGAACTGGGCGGCCTA
CAACGCCGCGCTCAAGGCTCGCGGGTCATTGACCGTTTGGCTGAACAAGGACATGCAGTGGTACGCCCCGGCCAGCGGCAAGCGAGGGCGTCCGCAGAGG
TTCTCGGACGCTGCCATCCAGTTTTGCCTGAGCCTCAAATGCCTCTTTGGCCTGGCACTCCGCCAGAGCCTGGGGATGGTGGAAAGCTTGCTGCGCCTGG
CCGGTCTGGACTGTCAAGTGCCCGACTTCAGCACCGTGTGCCGCCGTCAAAAAAACCTGCAGGTACAACTGCCCTACCGCCCCAGCTCGTCAGCCCTGAG
CCTGCTGGTCGATAGCACCGGTATCAAGTTCCTGGGTGAAGGCGAATGGAAGTGCAAGAAGCACGGAGCCGAGTATCGCCGCCAGTGGCGCAAGGTGCAC
CTGGGTATCGATGCCCAAACGCTGGAAATCCGCGCCATCGAGGTCACCGATAACCGCATCGGGGATGCGCCCATGCTGCCCGAACTGCTCAGTCAAATTC
CAGAGGATGAGCCCATTGCCAGTGTGGGCGGTGATGGTGCCTACGATACCAAAGCGTGTCATGCGGCCATCGCCCGGCGTAACGCACACGCCCTCATTCC
ACCACGCAAGAATGCGCGGGCGTGGAAGAGCACGGAAGCGGGGGCGGCATCGCGCAACGAAGCCCTGCGCGCATGCCGACGCCTGGGTCGAACGATATGG
AAGAAGTGGAGTGGCTACCACCGGCGCAGCTTGGTGGAGACCACGATGTACTGCTTCAAGCGTCTGGGTGAGCGCGTGATGGCCAGGACGTTTGAGCGTC
AGGTGGCGGAGCTGCATATGCGTGTAGCCCTGTTCAACCGCTTCACCCAACTCGGACGGCCGCAGACCGTGGCTGTGGCATAAATCCGTCTGGGGTGGGG
GCTATGCCGTCCTGGACGTCTTTTGTGCAACAAAGCC
CAACGCCGCGCTCAAGGCTCGCGGGTCATTGACCGTTTGGCTGAACAAGGACATGCAGTGGTACGCCCCGGCCAGCGGCAAGCGAGGGCGTCCGCAGAGG
TTCTCGGACGCTGCCATCCAGTTTTGCCTGAGCCTCAAATGCCTCTTTGGCCTGGCACTCCGCCAGAGCCTGGGGATGGTGGAAAGCTTGCTGCGCCTGG
CCGGTCTGGACTGTCAAGTGCCCGACTTCAGCACCGTGTGCCGCCGTCAAAAAAACCTGCAGGTACAACTGCCCTACCGCCCCAGCTCGTCAGCCCTGAG
CCTGCTGGTCGATAGCACCGGTATCAAGTTCCTGGGTGAAGGCGAATGGAAGTGCAAGAAGCACGGAGCCGAGTATCGCCGCCAGTGGCGCAAGGTGCAC
CTGGGTATCGATGCCCAAACGCTGGAAATCCGCGCCATCGAGGTCACCGATAACCGCATCGGGGATGCGCCCATGCTGCCCGAACTGCTCAGTCAAATTC
CAGAGGATGAGCCCATTGCCAGTGTGGGCGGTGATGGTGCCTACGATACCAAAGCGTGTCATGCGGCCATCGCCCGGCGTAACGCACACGCCCTCATTCC
ACCACGCAAGAATGCGCGGGCGTGGAAGAGCACGGAAGCGGGGGCGGCATCGCGCAACGAAGCCCTGCGCGCATGCCGACGCCTGGGTCGAACGATATGG
AAGAAGTGGAGTGGCTACCACCGGCGCAGCTTGGTGGAGACCACGATGTACTGCTTCAAGCGTCTGGGTGAGCGCGTGATGGCCAGGACGTTTGAGCGTC
AGGTGGCGGAGCTGCATATGCGTGTAGCCCTGTTCAACCGCTTCACCCAACTCGGACGGCCGCAGACCGTGGCTGTGGCATAAATCCGTCTGGGGTGGGG
GCTATGCCGTCCTGGACGTCTTTTGTGCAACAAAGCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
939 bp | 312 aa | 45 | 983 | + | No |
Chemistry : DDE
ORF sequence :
MSESKYPRGKYKTTNWAAYNAALKARGSLTVWLNKDMQWYAPASGKRGRPQRFSDAAIQFCLSLKCLFGLALRQSLGMVESLLRLAGLDCQVPDFSTVCR
RQKNLQVQLPYRPSSSALSLLVDSTGIKFLGEGEWKCKKHGAEYRRQWRKVHLGIDAQTLEIRAIEVTDNRIGDAPMLPELLSQIPEDEPIASVGGDGAY
DTKACHAAIARRNAHALIPPRKNARAWKSTEAGAASRNEALRACRRLGRTIWKKWSGYHRRSLVETTMYCFKRLGERVMARTFERQVAELHMRVALFNRF
TQLGRPQTVAVA
RQKNLQVQLPYRPSSSALSLLVDSTGIKFLGEGEWKCKKHGAEYRRQWRKVHLGIDAQTLEIRAIEVTDNRIGDAPMLPELLSQIPEDEPIASVGGDGAY
DTKACHAAIARRNAHALIPPRKNARAWKSTEAGAASRNEALRACRRLGRTIWKKWSGYHRRSLVETTMYCFKRLGERVMARTFERQVAELHMRVALFNRF
TQLGRPQTVAVA
Blast result :
Comments
ISBvi8 is 87% aa similar to ISGNB1-1
References
1] ISfinder annotation (2016)
2] Sahl,J., Keim,P. and Wagner,D. (2015) Direct submission GenBank
2] Sahl,J., Keim,P. and Wagner,D. (2015) Direct submission GenBank