ISLil2
- Family IS5
- Group IS903
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| JH597773 | ND | Leptonema illini | Leptonema illini DSM 21528 |
DNA section
IS Length : 1132 bp
Ends
IR Length : 17/18
IRL : GGCTTTGTTGTACTGAAAATGCTTGTACCCTGCAATGAGTCGTATAAACT
IRR : GGCTTTGTTGTATTGAAACGGTCAGTAGAGTGCGAACTTCCATGCTCAGT
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| TTTCGACTAACGCGAA TCGGCCTT | TCGGCCTC CCCGCGCGCGTTATGT | 0 | |
| CGCAACAAAGCC | GGGACAAT | AGTAATACGACA | 8 |
| GCAACAAAGCCA | AAGACTAC | AGGACGAACGTT | 8 |
| AGATAATTATGGGAGCGTTA | AATGTGCAAATAATGAGATT | 0 | |
| ACTAACGAGATCGGGCTCAG | GGGCCCCGGCGGCGCACGTT | 0 | |
| TTCACATAATGT AATGTCCC | AATGTTCCA ATAATTTTATT | 0 | |
| GGCGTTTGGTA | GAATGCGAA | AATAAAAATAT | 9 |
DNA sequence
GGCTTTGTTGTACTGAAAATGCTTGTACCCTGCAATGAGTCGTATAAACTGAACGCATGGCCCGGAAAAAAGCTGAAACACAGACCGAAGCAAAAGAGAA
AACACGTTATCGTGTAAAGAACTGGCGGGAATATAACCAGGCCCTCGTGAACCGGGGAAGCCTGACCGTATGGATCTCAGATGATATCAGCACGACCTGG
GCAGCGGAATACCGTCATAGAGGACGCGGCCATCAGCCTGTTTATTCGGACCAGGCAATTGAGTTCATGCTGACTCTCCGGGGCCTGTTCAAATTCCCTC
TTCGCCAGACCACCGGTTTTGTAAGGTCGCTATTCACGATGCTAAAGCTGGATCTGCAAGTGCCCGATTATTCACAGGTTTGCAGAAGACAGGCGGGGAT
CAAGATGAAGCCGATCAATGCCTCAAAGGCTATGAAAAAAGGCGTGGATCTGGTTATGGATTCGACGGGGCTGAAAGTCTATGGCGACGGTGAATGGATG
ACCAGAAAGCATGGTCCCTCAAAACGTCGTACGTGGCGAAAACTGCATATCGGAATCGACGTTAATTCCGGCGAGATAGTTTATGCCGAGTTAACAAGCA
ATAATGAGGATAGCGGCGACAGCAAAGAAGCGGTAAAGGCGATGCGAGATTTGATTTCGTCAGGCGTGAAAATAAAGTCGTTCAGGGGCGACGGAGCCTA
TGATACTCATGCTGTTTACAATACCGCCCGCATCAACGGAATCAATGTGATCGTTCCACCCCGCGAACATGCAGTGACGCTCGATGAAAAGTATTCAAAT
GCGGAAAGGTTCAAGATATCCTGGCAGAGGGATGATACTATCAGGGCTGTGAGAGAGAAGACCCGAGCAGCATGGAAGGAGGAAAGCGACTATCATAAGC
GATCACTCGTAGAAATGACTTTCTTTCGTTACAAAACAGTATTCGGAGAAAGGATGGCCGCTCGTAATTTCCCAAACCAGCAAGCCGAAGTTCTCTTGAG
AAGCCGGTTGTTGAACAAGCTCAATCAGCTCGGCAAGCCCGTTTCTGTTCCGATAAAAACCTGAAGACTCAATGTTAAAACGACTGAGCATGGAAGTTCG
CACTCTACTGACCGTTTCAATACAACAAAGCC
AACACGTTATCGTGTAAAGAACTGGCGGGAATATAACCAGGCCCTCGTGAACCGGGGAAGCCTGACCGTATGGATCTCAGATGATATCAGCACGACCTGG
GCAGCGGAATACCGTCATAGAGGACGCGGCCATCAGCCTGTTTATTCGGACCAGGCAATTGAGTTCATGCTGACTCTCCGGGGCCTGTTCAAATTCCCTC
TTCGCCAGACCACCGGTTTTGTAAGGTCGCTATTCACGATGCTAAAGCTGGATCTGCAAGTGCCCGATTATTCACAGGTTTGCAGAAGACAGGCGGGGAT
CAAGATGAAGCCGATCAATGCCTCAAAGGCTATGAAAAAAGGCGTGGATCTGGTTATGGATTCGACGGGGCTGAAAGTCTATGGCGACGGTGAATGGATG
ACCAGAAAGCATGGTCCCTCAAAACGTCGTACGTGGCGAAAACTGCATATCGGAATCGACGTTAATTCCGGCGAGATAGTTTATGCCGAGTTAACAAGCA
ATAATGAGGATAGCGGCGACAGCAAAGAAGCGGTAAAGGCGATGCGAGATTTGATTTCGTCAGGCGTGAAAATAAAGTCGTTCAGGGGCGACGGAGCCTA
TGATACTCATGCTGTTTACAATACCGCCCGCATCAACGGAATCAATGTGATCGTTCCACCCCGCGAACATGCAGTGACGCTCGATGAAAAGTATTCAAAT
GCGGAAAGGTTCAAGATATCCTGGCAGAGGGATGATACTATCAGGGCTGTGAGAGAGAAGACCCGAGCAGCATGGAAGGAGGAAAGCGACTATCATAAGC
GATCACTCGTAGAAATGACTTTCTTTCGTTACAAAACAGTATTCGGAGAAAGGATGGCCGCTCGTAATTTCCCAAACCAGCAAGCCGAAGTTCTCTTGAG
AAGCCGGTTGTTGAACAAGCTCAATCAGCTCGGCAAGCCCGTTTCTGTTCCGATAAAAACCTGAAGACTCAATGTTAAAACGACTGAGCATGGAAGTTCG
CACTCTACTGACCGTTTCAATACAACAAAGCC
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 1008 bp | 335 aa | 63 | 1070 | + | No |
Chemistry : DDE
ORF sequence :
MARKKAETQTEAKEKTRYRVKNWREYNQALVNRGSLTVWISDDISTTWAAEYRHRGRGHQPVYSDQAIEFMLTLRGLFKFPLRQTTGFVRSLFTMLKLDL
QVPDYSQVCRRQAGIKMKPINASKAMKKGVDLVMDSTGLKVYGDGEWMTRKHGPSKRRTWRKLHIGIDVNSGEIVYAELTSNNEDSGDSKEAVKAMRDLI
SSGVKIKSFRGDGAYDTHAVYNTARINGINVIVPPREHAVTLDEKYSNAERFKISWQRDDTIRAVREKTRAAWKEESDYHKRSLVEMTFFRYKTVFGERM
AARNFPNQQAEVLLRSRLLNKLNQLGKPVSVPIKT
QVPDYSQVCRRQAGIKMKPINASKAMKKGVDLVMDSTGLKVYGDGEWMTRKHGPSKRRTWRKLHIGIDVNSGEIVYAELTSNNEDSGDSKEAVKAMRDLI
SSGVKIKSFRGDGAYDTHAVYNTARINGINVIVPPREHAVTLDEKYSNAERFKISWQRDDTIRAVREKTRAAWKEESDYHKRSLVEMTFFRYKTVFGERM
AARNFPNQQAEVLLRSRLLNKLNQLGKPVSVPIKT
Blast result :
Comments
ISLil2 is 56% aa similar to ISAzba3.
References
1] ISfinder annotation (2016)
2] Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Peters,L., Mikhailova,N., Held,B., Kyrpides,N., Mavromatis,K., Ivanova,N., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Gronow,S., Wellnitz,S., Brambilla,E.-M., Klenk,H.-P. and Eisen,J.A. (2011) Direct submission GenBank.
2] Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Peters,L., Mikhailova,N., Held,B., Kyrpides,N., Mavromatis,K., Ivanova,N., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Gronow,S., Wellnitz,S., Brambilla,E.-M., Klenk,H.-P. and Eisen,J.A. (2011) Direct submission GenBank.