ISCpi1

  • Family IS5
  • Group IS903
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
JTGE01000125 ND Chromobacterium piscinae
Chromobacterium piscinae ND17
DNA section
IS Length : 1036 bp

Ends


IR Length : 19/20

IRL : GGCACTGTTGCACAAATCCTCCCCCGCCGCAGCTTGGTAAGATAGTGGCA
IRR : GGCGCTGTTGCACAAATCCTGAACAGGGCGAGACTCCCCTTACCCCAAAT

Insertion site


Left flankDirect repeatRight flankDR Length
GATGTTGTGGCCGGTGCCCNNNNN0

DNA sequence

GGCACTGTTGCACAAATCCTCCCCCGCCGCAGCTTGGTAAGATAGTGGCATGACCAAGCCTGCTCCAAAACGCTACCGAACCACCAACTGGAAAGCCTAC
AACCAAGCCCTGATCCAGCGCGGCTCTCTGTCCGTCTGGCTGGATACGAGCATGTCATGGCAGGCGACTCCGCAGGGCAAGCGCGGACGGACGCAGACCT
ATAGCGATGCCGTCATTCAATTCTGCCTGACCATCAAGAACCTGCTTGGACTAGCGTTGCGGCAGACCATCGGCTTCATCCAAAGCCTGATCCAGCTGGC
GGGCCTGGACTGGAGCGTCCCCGACTACAGCACGCTATCCAGACGGCAGCAAACGCAGCAGGTCCAAATTCCCTACCAGAAAGGCTCGGGCGCACTGCAC
CTGCTGGTGGATAGCACCGGCATCAAGATGTTGGGCGAAGGGGAGTGGAAAACCAAGAAGCATGGCGCGGAATATCGCCGACAATGGCGCAAAGTGCATC
TGGGCATCGATGCGGAAACCCTGCAAATCCGCGCCATCGAGGTAACCGACAACCGCCAGGGCGATGCGCAAATGCTGCCTTCGCTATTGACGCAAATTCC
GGCCGATGAGCCGATAGCCTGTGTGAGCGGCGATGGGGCTTTCGATACCAAGGCATGCCACGAGGCGATTGCTGCGCTGGGCGCGATTGGGTACATCCCG
ACCCGCAAGAATGCGAGACCGTGGAGAGGAAATTCGCTGGGTGTGCTGGCTCGGAACGAGATTCTGCGGGCGACCAAGCGACTAGGCAGGGCAATCTGGA
AACGTTGGAGCGGCTACCATCGCCGCAGCTTGGTGGAAACTAAGATGCATTGCTTCAAACGGTTGGGGGAAAGGGTGACGGCCCGGCGTTTCGATGGTCA
AGTGGCAGAGCTGCAAGTGCGCGCAGCGATCTTGAACCGCTTCAGCATGCTGGGCCGTCCTTGTACGGTGGCTGTGGCGTAAATTTATTTGGGGTAAGGG
GAGTCTCGCCCTGTTCAGGATTTGTGCAACAGCGCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
933 bp310 aa50982+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MTKPAPKRYRTTNWKAYNQALIQRGSLSVWLDTSMSWQATPQGKRGRTQTYSDAVIQFCLTIKNLLGLALRQTIGFIQSLIQLAGLDWSVPDYSTLSRRQ
QTQQVQIPYQKGSGALHLLVDSTGIKMLGEGEWKTKKHGAEYRRQWRKVHLGIDAETLQIRAIEVTDNRQGDAQMLPSLLTQIPADEPIACVSGDGAFDT
KACHEAIAALGAIGYIPTRKNARPWRGNSLGVLARNEILRATKRLGRAIWKRWSGYHRRSLVETKMHCFKRLGERVTARRFDGQVAELQVRAAILNRFSM
LGRPCTVAVA

 

Blast result :
Comments
ISCpi1 is 82% aa similar to ISPa35.
References
1] ISfinder annotation (2016)
2] Chan,K.G. and Yunos,N.Y. (2016) Genome Announc 4 (2).