ISCpi1
- Family IS5
- Group IS903
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
JTGE01000125 | ND | Chromobacterium piscinae | Chromobacterium piscinae ND17 |
DNA section
IS Length : 1036 bp
Ends
IR Length : 19/20
IRL : GGCACTGTTGCACAAATCCTCCCCCGCCGCAGCTTGGTAAGATAGTGGCA
IRR : GGCGCTGTTGCACAAATCCTGAACAGGGCGAGACTCCCCTTACCCCAAAT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GATGTTGTGGCCGGTGCCC | NNNNN | 0 |
DNA sequence
GGCACTGTTGCACAAATCCTCCCCCGCCGCAGCTTGGTAAGATAGTGGCATGACCAAGCCTGCTCCAAAACGCTACCGAACCACCAACTGGAAAGCCTAC
AACCAAGCCCTGATCCAGCGCGGCTCTCTGTCCGTCTGGCTGGATACGAGCATGTCATGGCAGGCGACTCCGCAGGGCAAGCGCGGACGGACGCAGACCT
ATAGCGATGCCGTCATTCAATTCTGCCTGACCATCAAGAACCTGCTTGGACTAGCGTTGCGGCAGACCATCGGCTTCATCCAAAGCCTGATCCAGCTGGC
GGGCCTGGACTGGAGCGTCCCCGACTACAGCACGCTATCCAGACGGCAGCAAACGCAGCAGGTCCAAATTCCCTACCAGAAAGGCTCGGGCGCACTGCAC
CTGCTGGTGGATAGCACCGGCATCAAGATGTTGGGCGAAGGGGAGTGGAAAACCAAGAAGCATGGCGCGGAATATCGCCGACAATGGCGCAAAGTGCATC
TGGGCATCGATGCGGAAACCCTGCAAATCCGCGCCATCGAGGTAACCGACAACCGCCAGGGCGATGCGCAAATGCTGCCTTCGCTATTGACGCAAATTCC
GGCCGATGAGCCGATAGCCTGTGTGAGCGGCGATGGGGCTTTCGATACCAAGGCATGCCACGAGGCGATTGCTGCGCTGGGCGCGATTGGGTACATCCCG
ACCCGCAAGAATGCGAGACCGTGGAGAGGAAATTCGCTGGGTGTGCTGGCTCGGAACGAGATTCTGCGGGCGACCAAGCGACTAGGCAGGGCAATCTGGA
AACGTTGGAGCGGCTACCATCGCCGCAGCTTGGTGGAAACTAAGATGCATTGCTTCAAACGGTTGGGGGAAAGGGTGACGGCCCGGCGTTTCGATGGTCA
AGTGGCAGAGCTGCAAGTGCGCGCAGCGATCTTGAACCGCTTCAGCATGCTGGGCCGTCCTTGTACGGTGGCTGTGGCGTAAATTTATTTGGGGTAAGGG
GAGTCTCGCCCTGTTCAGGATTTGTGCAACAGCGCC
AACCAAGCCCTGATCCAGCGCGGCTCTCTGTCCGTCTGGCTGGATACGAGCATGTCATGGCAGGCGACTCCGCAGGGCAAGCGCGGACGGACGCAGACCT
ATAGCGATGCCGTCATTCAATTCTGCCTGACCATCAAGAACCTGCTTGGACTAGCGTTGCGGCAGACCATCGGCTTCATCCAAAGCCTGATCCAGCTGGC
GGGCCTGGACTGGAGCGTCCCCGACTACAGCACGCTATCCAGACGGCAGCAAACGCAGCAGGTCCAAATTCCCTACCAGAAAGGCTCGGGCGCACTGCAC
CTGCTGGTGGATAGCACCGGCATCAAGATGTTGGGCGAAGGGGAGTGGAAAACCAAGAAGCATGGCGCGGAATATCGCCGACAATGGCGCAAAGTGCATC
TGGGCATCGATGCGGAAACCCTGCAAATCCGCGCCATCGAGGTAACCGACAACCGCCAGGGCGATGCGCAAATGCTGCCTTCGCTATTGACGCAAATTCC
GGCCGATGAGCCGATAGCCTGTGTGAGCGGCGATGGGGCTTTCGATACCAAGGCATGCCACGAGGCGATTGCTGCGCTGGGCGCGATTGGGTACATCCCG
ACCCGCAAGAATGCGAGACCGTGGAGAGGAAATTCGCTGGGTGTGCTGGCTCGGAACGAGATTCTGCGGGCGACCAAGCGACTAGGCAGGGCAATCTGGA
AACGTTGGAGCGGCTACCATCGCCGCAGCTTGGTGGAAACTAAGATGCATTGCTTCAAACGGTTGGGGGAAAGGGTGACGGCCCGGCGTTTCGATGGTCA
AGTGGCAGAGCTGCAAGTGCGCGCAGCGATCTTGAACCGCTTCAGCATGCTGGGCCGTCCTTGTACGGTGGCTGTGGCGTAAATTTATTTGGGGTAAGGG
GAGTCTCGCCCTGTTCAGGATTTGTGCAACAGCGCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
933 bp | 310 aa | 50 | 982 | + | No |
Chemistry : DDE
ORF sequence :
MTKPAPKRYRTTNWKAYNQALIQRGSLSVWLDTSMSWQATPQGKRGRTQTYSDAVIQFCLTIKNLLGLALRQTIGFIQSLIQLAGLDWSVPDYSTLSRRQ
QTQQVQIPYQKGSGALHLLVDSTGIKMLGEGEWKTKKHGAEYRRQWRKVHLGIDAETLQIRAIEVTDNRQGDAQMLPSLLTQIPADEPIACVSGDGAFDT
KACHEAIAALGAIGYIPTRKNARPWRGNSLGVLARNEILRATKRLGRAIWKRWSGYHRRSLVETKMHCFKRLGERVTARRFDGQVAELQVRAAILNRFSM
LGRPCTVAVA
QTQQVQIPYQKGSGALHLLVDSTGIKMLGEGEWKTKKHGAEYRRQWRKVHLGIDAETLQIRAIEVTDNRQGDAQMLPSLLTQIPADEPIACVSGDGAFDT
KACHEAIAALGAIGYIPTRKNARPWRGNSLGVLARNEILRATKRLGRAIWKRWSGYHRRSLVETKMHCFKRLGERVTARRFDGQVAELQVRAAILNRFSM
LGRPCTVAVA
Blast result :
Comments
ISCpi1 is 82% aa similar to ISPa35.
References
1] ISfinder annotation (2016)
2] Chan,K.G. and Yunos,N.Y. (2016) Genome Announc 4 (2).
2] Chan,K.G. and Yunos,N.Y. (2016) Genome Announc 4 (2).