ISNov2

  • Family IS5
  • Group IS903
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
DF850488 ND Novosphingobium sp.
Novosphingobium sp. MBES04
DNA section
IS Length : 1048 bp

Ends


IR Length : 15/17

IRL : GGCTTTGTTGCGCAAATGCCCAAGGGATTCCGTTGGTGAATCCAGTTGGT
IRR : GGCTTTGTTGCATAAATAGATCCAAGGCAGCAGTTAGCCTTTGAAGGCAT

Insertion site


Left flankDirect repeatRight flankDR Length
GGCATTGACCCATTGAAAACACCATTTCC9

DNA sequence

GGCTTTGTTGCGCAAATGCCCAAGGGATTCCGTTGGTGAATCCAGTTGGTTAGGAGGCGGCGATGAGCAGACCGCCCCGCGCCCGTTACCGCACGACGAA
TTGGAAGTCCTACAACGCAGCGCTGGCGCAGAGAGGTTCGCTTCAGGTCTGGTTTGACCCCGAGATGGAGTGGCTATCCACTCCGACCGGCAAGCGCGGG
CGTCAGCCGGTGTTCTCGGATGTCGCGATCCAGGCCTGCCTGACGCTGAAGGGCGTGTTCAAGCTGCCCTTGCGCCAGACCACCGGCATGGTCGCCAGCC
TTCTCGAGATGGCCGGGCTCGATTGGCCGGTGCCGGATTTCAGCACGCTGAGCCGAAGGCAGAAGACCCTGCTTGTCGAGATCCCCTGCCAGCCCAGTTC
CGGACCGTTGCACCTGCTGATTGACAGCACGGGCATCAAGGCCGTTGGAGACGGGGAATGGTGCAGGCGCAAACATGGCCCGTCCAAACGTCGCCAGTGG
CGAAAGGTTCACCTGGGTGTGGACCTCGGATCGTTGGATATCCGCGCTATCGAAGTGACGGGAAGCCGGGTTGGCGATGCCCCCATGCTGCCCGAACTGC
TGGACCAGATCCCATACGATCAAGCTATCGCGAGCGTCAGCGCCGATGGCGCTTTTGACACCAGGGCCTGTCACGAAGCCATTGCCGCACGCGATGCCTG
TGCGATCATCCCTGCCCGCAGTAATGCGCAAGCCTGGCCGGAGAGTACGCCGGGCGTCGCGGCCCGCAACGAAATCGTTCGCTCAAGTCAGCGGTTTGGC
AGGACAATCTGGAAACGATGGAGCGGCTATCACCAGCGCAGCTTGGTCGAAACCAAAATGCATTGCTTCAAACTCCTGGGCGAACGCATCATGGCACGCG
ACTTCGATCGCCAGGTCGCCGAAATGCAAATCCGCGCCGCCATCCTCAACCGCTTCACCGCACTCGGAAGGCCCCAAACTCAGCGTGTCGGGTGATCGAT
GCCTTCAAAGGCTAACTGCTGCCTTGGATCTATTTATGCAACAAAGCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
933 bp310 aa63995+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MSRPPRARYRTTNWKSYNAALAQRGSLQVWFDPEMEWLSTPTGKRGRQPVFSDVAIQACLTLKGVFKLPLRQTTGMVASLLEMAGLDWPVPDFSTLSRRQ
KTLLVEIPCQPSSGPLHLLIDSTGIKAVGDGEWCRRKHGPSKRRQWRKVHLGVDLGSLDIRAIEVTGSRVGDAPMLPELLDQIPYDQAIASVSADGAFDT
RACHEAIAARDACAIIPARSNAQAWPESTPGVAARNEIVRSSQRFGRTIWKRWSGYHQRSLVETKMHCFKLLGERIMARDFDRQVAEMQIRAAILNRFTA
LGRPQTQRVG

 

Blast result :
Comments
ISnov2 is 81% aa similar to ISPa35.
References
1] ISfinder annotation (2016)
2] Ohta,Y., Nishi,S., Kobayashi,K., Tsubouchi,T., Iida,K., Tanizaki,A., Kurosawa,K., Adachi,A., Nishihara,M., Sato,R., Hasegawa,R. and Hatada,Y. (2015) Genome Announc 3 (1).