ISNov2
- Family IS5
- Group IS903
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
DF850488 | ND | Novosphingobium sp. | Novosphingobium sp. MBES04 |
DNA section
IS Length : 1048 bp
Ends
IR Length : 15/17
IRL : GGCTTTGTTGCGCAAATGCCCAAGGGATTCCGTTGGTGAATCCAGTTGGT
IRR : GGCTTTGTTGCATAAATAGATCCAAGGCAGCAGTTAGCCTTTGAAGGCAT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GGCATTGACC | CATTGAAAA | CACCATTTCC | 9 |
DNA sequence
GGCTTTGTTGCGCAAATGCCCAAGGGATTCCGTTGGTGAATCCAGTTGGTTAGGAGGCGGCGATGAGCAGACCGCCCCGCGCCCGTTACCGCACGACGAA
TTGGAAGTCCTACAACGCAGCGCTGGCGCAGAGAGGTTCGCTTCAGGTCTGGTTTGACCCCGAGATGGAGTGGCTATCCACTCCGACCGGCAAGCGCGGG
CGTCAGCCGGTGTTCTCGGATGTCGCGATCCAGGCCTGCCTGACGCTGAAGGGCGTGTTCAAGCTGCCCTTGCGCCAGACCACCGGCATGGTCGCCAGCC
TTCTCGAGATGGCCGGGCTCGATTGGCCGGTGCCGGATTTCAGCACGCTGAGCCGAAGGCAGAAGACCCTGCTTGTCGAGATCCCCTGCCAGCCCAGTTC
CGGACCGTTGCACCTGCTGATTGACAGCACGGGCATCAAGGCCGTTGGAGACGGGGAATGGTGCAGGCGCAAACATGGCCCGTCCAAACGTCGCCAGTGG
CGAAAGGTTCACCTGGGTGTGGACCTCGGATCGTTGGATATCCGCGCTATCGAAGTGACGGGAAGCCGGGTTGGCGATGCCCCCATGCTGCCCGAACTGC
TGGACCAGATCCCATACGATCAAGCTATCGCGAGCGTCAGCGCCGATGGCGCTTTTGACACCAGGGCCTGTCACGAAGCCATTGCCGCACGCGATGCCTG
TGCGATCATCCCTGCCCGCAGTAATGCGCAAGCCTGGCCGGAGAGTACGCCGGGCGTCGCGGCCCGCAACGAAATCGTTCGCTCAAGTCAGCGGTTTGGC
AGGACAATCTGGAAACGATGGAGCGGCTATCACCAGCGCAGCTTGGTCGAAACCAAAATGCATTGCTTCAAACTCCTGGGCGAACGCATCATGGCACGCG
ACTTCGATCGCCAGGTCGCCGAAATGCAAATCCGCGCCGCCATCCTCAACCGCTTCACCGCACTCGGAAGGCCCCAAACTCAGCGTGTCGGGTGATCGAT
GCCTTCAAAGGCTAACTGCTGCCTTGGATCTATTTATGCAACAAAGCC
TTGGAAGTCCTACAACGCAGCGCTGGCGCAGAGAGGTTCGCTTCAGGTCTGGTTTGACCCCGAGATGGAGTGGCTATCCACTCCGACCGGCAAGCGCGGG
CGTCAGCCGGTGTTCTCGGATGTCGCGATCCAGGCCTGCCTGACGCTGAAGGGCGTGTTCAAGCTGCCCTTGCGCCAGACCACCGGCATGGTCGCCAGCC
TTCTCGAGATGGCCGGGCTCGATTGGCCGGTGCCGGATTTCAGCACGCTGAGCCGAAGGCAGAAGACCCTGCTTGTCGAGATCCCCTGCCAGCCCAGTTC
CGGACCGTTGCACCTGCTGATTGACAGCACGGGCATCAAGGCCGTTGGAGACGGGGAATGGTGCAGGCGCAAACATGGCCCGTCCAAACGTCGCCAGTGG
CGAAAGGTTCACCTGGGTGTGGACCTCGGATCGTTGGATATCCGCGCTATCGAAGTGACGGGAAGCCGGGTTGGCGATGCCCCCATGCTGCCCGAACTGC
TGGACCAGATCCCATACGATCAAGCTATCGCGAGCGTCAGCGCCGATGGCGCTTTTGACACCAGGGCCTGTCACGAAGCCATTGCCGCACGCGATGCCTG
TGCGATCATCCCTGCCCGCAGTAATGCGCAAGCCTGGCCGGAGAGTACGCCGGGCGTCGCGGCCCGCAACGAAATCGTTCGCTCAAGTCAGCGGTTTGGC
AGGACAATCTGGAAACGATGGAGCGGCTATCACCAGCGCAGCTTGGTCGAAACCAAAATGCATTGCTTCAAACTCCTGGGCGAACGCATCATGGCACGCG
ACTTCGATCGCCAGGTCGCCGAAATGCAAATCCGCGCCGCCATCCTCAACCGCTTCACCGCACTCGGAAGGCCCCAAACTCAGCGTGTCGGGTGATCGAT
GCCTTCAAAGGCTAACTGCTGCCTTGGATCTATTTATGCAACAAAGCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
933 bp | 310 aa | 63 | 995 | + | No |
Chemistry : DDE
ORF sequence :
MSRPPRARYRTTNWKSYNAALAQRGSLQVWFDPEMEWLSTPTGKRGRQPVFSDVAIQACLTLKGVFKLPLRQTTGMVASLLEMAGLDWPVPDFSTLSRRQ
KTLLVEIPCQPSSGPLHLLIDSTGIKAVGDGEWCRRKHGPSKRRQWRKVHLGVDLGSLDIRAIEVTGSRVGDAPMLPELLDQIPYDQAIASVSADGAFDT
RACHEAIAARDACAIIPARSNAQAWPESTPGVAARNEIVRSSQRFGRTIWKRWSGYHQRSLVETKMHCFKLLGERIMARDFDRQVAEMQIRAAILNRFTA
LGRPQTQRVG
KTLLVEIPCQPSSGPLHLLIDSTGIKAVGDGEWCRRKHGPSKRRQWRKVHLGVDLGSLDIRAIEVTGSRVGDAPMLPELLDQIPYDQAIASVSADGAFDT
RACHEAIAARDACAIIPARSNAQAWPESTPGVAARNEIVRSSQRFGRTIWKRWSGYHQRSLVETKMHCFKLLGERIMARDFDRQVAEMQIRAAILNRFTA
LGRPQTQRVG
Blast result :
Comments
ISnov2 is 81% aa similar to ISPa35.
References
1] ISfinder annotation (2016)
2] Ohta,Y., Nishi,S., Kobayashi,K., Tsubouchi,T., Iida,K., Tanizaki,A., Kurosawa,K., Adachi,A., Nishihara,M., Sato,R., Hasegawa,R. and Hatada,Y. (2015) Genome Announc 3 (1).
2] Ohta,Y., Nishi,S., Kobayashi,K., Tsubouchi,T., Iida,K., Tanizaki,A., Kurosawa,K., Adachi,A., Nishihara,M., Sato,R., Hasegawa,R. and Hatada,Y. (2015) Genome Announc 3 (1).