ISThar1
- Family IS5
- Group IS903
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
CP012850 | ND | Thaumarchaeota archaeon | Thaumarchaeota archaeon MY3 |
DNA section
IS Length : 997 bp
Ends
IR Length : 15/18
IRL : TGCTTTGTCGCCTAACTCAACATATTTAGCTGGAATGAACAGATTGATTA
IRR : TGCTTTGTTGCATAATTCCTTATTCTCCGGTTATCATCATGATCATCATG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GATGATTGTA | ATTAACTTT | CATTAATGGA | 9 |
TGATGATTGTA | ATTAACTTT | CATTAATGGAA | 9 |
GGAATATTGAAG | GAATCTTC | CCATTATTCTCC | 8 |
TAGAATCTATA | ATATGAAGT | CATAAAAAATG | 9 |
GATCTATTGTA | GTTTAATGC | TAAATAAAAAA | 9 |
CTCAATAGGTG | GATCTTATC | TTTATTTTGTA | 9 |
AAAAAATTTTA | TTACAAGAC | TAATTTAATAC | 9 |
ATGAAATTATG | ATTGTAGGT | CTATAACATAA | 9 |
TTGAGTTTGTA | TTATTATGA | TAAAAATATTC | 9 |
TATAATGATTT | TATTATATG | CATTAAATATT | 9 |
GTTGTTTTTTGG | GTTGTATT | CAATAAAAAATG | 8 |
CTAAAATAAGAA | TTGCCAAA | TAAAGAATAAGA | 8 |
AGAGTATTATGG | TTTTTATA | GTTTTATGGACA | 8 |
TATTTTTTTATT | AAGATTTA | GGTTTATCTCAG | 8 |
ATAATAAAGCA | ATTACCAAA | CATAAAATTAC | 9 |
TTGATTTTTAT | GTTCTAATC | TCCTGCGCGAC | 9 |
CATCATAATCCT | TAATTCAG | CACAAAATTCAA | 8 |
AAAAAATCTAAC | CAAACATA | AAGTAATAATTA | 8 |
GATCTATTAGT | GTTCGATTG | ATGATTCCTGA | 9 |
ATTTTGTCAGCA | TAATGAAA | TACATATTTCAA | 8 |
AATAAAATATT | TATTTCAAT | AATAAATTTTC | 9 |
TTCAACTCAACA | TTTTACAT | GGTAAAAGTTGA | 8 |
AGAATATAATA | TTTAACAAC | AACAAATTTTG | 9 |
GATCCTCATAGA | CTACATAC | CTTAAAAAAATA | 8 |
TTGTTTTTCATA | ATTATATC | GGTAAATTCCTC | 8 |
TTAACGTTTATG | AAAATTCT | AGATCATTCTAA | 8 |
TAATATTTTCG | GATCCAATC | TAATCATATGG | 9 |
TCAACTTTTTA | GATATTACA | TAATCAATTAC | 9 |
ATAATTATCAA | GTTTTAAAG | AACAAAATAAA | 9 |
ATATGTCTGTA | ATTAAAAAC | TGATCATTGC | 9 |
CATGTTCATAG | CATATGAAT | TCCCATACAAC | 9 |
ACTCATGAATG TAGATGATC | TAATGAGAC TATTTTTTAAT | 0 | |
CAGTCTTGTAA TAATGAGAC | TAGATGATC CTAATTCTAGA | 0 |
DNA sequence
TGCTTTGTCGCCTAACTCAACATATTTAGCTGGAATGAACAGATTGATTATTTGTGATAGACTGGCCCTCTTACAATCGCTCATTAGTTCAACGCGGTGA
GATCCTCTTCTCGTATGATTTCCTTGATGGTTGGGGTTCAGAGATAGAGAATATGAATATAAACAAAAAGGGTAAACCATTTGTATTTCCAGATTCTTTC
ATCTTGGCCATTGGTTACATTCGCTATTTATTTCACCTACCATACAGACAAACCCAAGGTATAATTAAGGCCACAGGAAAAAGGTTACCTGCTAATCCAC
CAAGTTATGGTCACATCTGTAAACGAATCAACAAGCTAAACATCGATATTAAAAGAGACAAGATGGATGACGATGATGACCTAATAATATCAGTAGACAG
TACAGGTATCAAGATTACTAACAGAGGTCAGTGGATGGATGAGAAATGGAATACACAAAATAGAAAAGGATATCTCAAGATCCACGTTGCTGTAGACATA
AAGACCAGGAAAATCATTGCTTTGGAAGTGACAGATGAGAAGGTACATGATGGGAAAATGCTAAAGAAACTAGTCAATCATGTTTTGGATTCGAGAGAAC
CAAACACTGTAAAGATAAAATCGGTACTAGCTGATGGAGCCTATGATTCAAATCCAAACTTTGTGTATCTTGAGGACAAAAAGATCAATCCAGGTATAAA
GGTAAGAAGGAACTCTATTGTTTCTCCTAAAAACAATAGGTTAAGGAACAACGAAGTAAAGTTACAAGCAAAGGATCTGTTGAAATGGAAGACAAAAAGA
AAATACGGACAGAGATGGATATCTGAAACTGTGTTCTCAGCTATAAAGAGAATGTTTGGTGAATACACATCAGCAAACAGGTTTCAAAACATGGTAAAGG
AGATCATGATAAAAGTATCATTGTATAACATTTTTAGAAGAATATAACATGATGATCATGATGATAACCGGAGAATAAGGAATTATGCAACAAAGCA
GATCCTCTTCTCGTATGATTTCCTTGATGGTTGGGGTTCAGAGATAGAGAATATGAATATAAACAAAAAGGGTAAACCATTTGTATTTCCAGATTCTTTC
ATCTTGGCCATTGGTTACATTCGCTATTTATTTCACCTACCATACAGACAAACCCAAGGTATAATTAAGGCCACAGGAAAAAGGTTACCTGCTAATCCAC
CAAGTTATGGTCACATCTGTAAACGAATCAACAAGCTAAACATCGATATTAAAAGAGACAAGATGGATGACGATGATGACCTAATAATATCAGTAGACAG
TACAGGTATCAAGATTACTAACAGAGGTCAGTGGATGGATGAGAAATGGAATACACAAAATAGAAAAGGATATCTCAAGATCCACGTTGCTGTAGACATA
AAGACCAGGAAAATCATTGCTTTGGAAGTGACAGATGAGAAGGTACATGATGGGAAAATGCTAAAGAAACTAGTCAATCATGTTTTGGATTCGAGAGAAC
CAAACACTGTAAAGATAAAATCGGTACTAGCTGATGGAGCCTATGATTCAAATCCAAACTTTGTGTATCTTGAGGACAAAAAGATCAATCCAGGTATAAA
GGTAAGAAGGAACTCTATTGTTTCTCCTAAAAACAATAGGTTAAGGAACAACGAAGTAAAGTTACAAGCAAAGGATCTGTTGAAATGGAAGACAAAAAGA
AAATACGGACAGAGATGGATATCTGAAACTGTGTTCTCAGCTATAAAGAGAATGTTTGGTGAATACACATCAGCAAACAGGTTTCAAAACATGGTAAAGG
AGATCATGATAAAAGTATCATTGTATAACATTTTTAGAAGAATATAACATGATGATCATGATGATAACCGGAGAATAAGGAATTATGCAACAAAGCA
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
894 bp | 297 aa | 54 | 947 | + | No |
Chemistry : DDE
ORF sequence :
MIDWPSYNRSLVQRGEILFSYDFLDGWGSEIENMNINKKGKPFVFPDSFILAIGYIRYLFHLPYRQTQGIIKATGKRLPANPPSYGHICKRINKLNIDIK
RDKMDDDDDLIISVDSTGIKITNRGQWMDEKWNTQNRKGYLKIHVAVDIKTRKIIALEVTDEKVHDGKMLKKLVNHVLDSREPNTVKIKSVLADGAYDSN
PNFVYLEDKKINPGIKVRRNSIVSPKNNRLRNNEVKLQAKDLLKWKTKRKYGQRWISETVFSAIKRMFGEYTSANRFQNMVKEIMIKVSLYNIFRRI
RDKMDDDDDLIISVDSTGIKITNRGQWMDEKWNTQNRKGYLKIHVAVDIKTRKIIALEVTDEKVHDGKMLKKLVNHVLDSREPNTVKIKSVLADGAYDSN
PNFVYLEDKKINPGIKVRRNSIVSPKNNRLRNNEVKLQAKDLLKWKTKRKYGQRWISETVFSAIKRMFGEYTSANRFQNMVKEIMIKVSLYNIFRRI
Blast result :
Comments
ISThar1 is 63% aa similar to ISArve1.
References
1] ISfinder annotation (2016)
2] Jung,M.-Y. and Rhee,S.-K. (2015) Direct submission.
2] Jung,M.-Y. and Rhee,S.-K. (2015) Direct submission.