ISMebo2
- Family IS5
- Group IS903
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| LT549891 | ND | Methanoculleus bourgensis | Methanoculleus bourgensis BA1 Methanoculleus sp. MAB1 |
DNA section
IS Length : 1057 bp
Ends
IR Length : 15
IRL : TGCTGTGTTGCATAAATCTGATCCACCGACCCCAACACAGAAGATGCCGG
IRR : TGCTGTGTTGCATAATTATCCTGGTGGTTACCCCCCGCCATTCACCTCCC
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| TCGTAACTATTCAGCCCAAC | GAAGAGGCATACGTTTAAGT | 0 |
DNA sequence
TGCTGTGTTGCATAAATCTGATCCACCGACCCCAACACAGAAGATGCCGGACGTCCCCTCCGCCCCTTCATGCAAAGAAACAAACGTTGGGGGCGCCCGT
GCCCCGATAAGCGTGACTGGAGTATATATAATGAGCTCCTGGTCCAGCGCGGCGAATTCTCTCTCACTTGACTTTGTCGACCAGTGGGATGCCCAGCTCG
CCCAGATGAACGCTGGCAAGCGTGGCCGACCCTTCCAGTATCCAGAATCATTCATTGCATGGATGGCTCGCATCCACATCTTCCTGCAGATGCCCTACCG
CCAGATGGAGGGGTTTGTCCGGAAACTCGCGACATTCATCCCCTCTCTCAAGGCAGCCAATTATACCACGCTCTTTTGTCGAATCAAGAATCTGGATCTC
TCACTCGAAGCACTCCCCGAGATCCTCGCCGACGATGTCATCGTCGGCGCCGATAGCACCGGGATCAAGGTCACGAATCGAGGGGAGTGGATGCGCGAGA
AGTGGGGGGCCAGACGTGGTTGGATCAAGGTGCATCTCATGATTGATGTCGAGACCAACCAGGCGCTCGGTCTGGAGATCACCGATGAAGCCATGCAGGA
CGACCAGAGGTTCATTCCCCTCCTCGACCAGACCCAACAGAACTGTGGCGAGGAACACCCGGTGTACCGAGTTCTCGCGGATGGGGCCTATGACCGAAAT
AAACTCTTCAACGCCCTCGAACACCGGGGAATCGCATCGGGCATCAAAACCCGGGTCAATGCCGCGACCCATTCGACCGGGTCACCGTATCGAGCCGAAT
GCGTCAGAAACCGAAAGAGATGGGGCGGATATCCCATGTGGGCGCTGGTAGTTACCTACGGGATGCGGTGGAAGGTCGAAGGAGCCTTCTCTACCATCAA
ACGGATCCTGGGAGAGCGGGTACAGGCGACATCTCGAGAGGGGATGTTTCGGGAAGTACGGATGAAAGTGAACAGTTATAACAGGTTGATCGCTCTGGCA
GCCTGACGGGAGGTGAATGGCGGGGGGTAACCACCAGGATAATTATGCAACACAGCA
GCCCCGATAAGCGTGACTGGAGTATATATAATGAGCTCCTGGTCCAGCGCGGCGAATTCTCTCTCACTTGACTTTGTCGACCAGTGGGATGCCCAGCTCG
CCCAGATGAACGCTGGCAAGCGTGGCCGACCCTTCCAGTATCCAGAATCATTCATTGCATGGATGGCTCGCATCCACATCTTCCTGCAGATGCCCTACCG
CCAGATGGAGGGGTTTGTCCGGAAACTCGCGACATTCATCCCCTCTCTCAAGGCAGCCAATTATACCACGCTCTTTTGTCGAATCAAGAATCTGGATCTC
TCACTCGAAGCACTCCCCGAGATCCTCGCCGACGATGTCATCGTCGGCGCCGATAGCACCGGGATCAAGGTCACGAATCGAGGGGAGTGGATGCGCGAGA
AGTGGGGGGCCAGACGTGGTTGGATCAAGGTGCATCTCATGATTGATGTCGAGACCAACCAGGCGCTCGGTCTGGAGATCACCGATGAAGCCATGCAGGA
CGACCAGAGGTTCATTCCCCTCCTCGACCAGACCCAACAGAACTGTGGCGAGGAACACCCGGTGTACCGAGTTCTCGCGGATGGGGCCTATGACCGAAAT
AAACTCTTCAACGCCCTCGAACACCGGGGAATCGCATCGGGCATCAAAACCCGGGTCAATGCCGCGACCCATTCGACCGGGTCACCGTATCGAGCCGAAT
GCGTCAGAAACCGAAAGAGATGGGGCGGATATCCCATGTGGGCGCTGGTAGTTACCTACGGGATGCGGTGGAAGGTCGAAGGAGCCTTCTCTACCATCAA
ACGGATCCTGGGAGAGCGGGTACAGGCGACATCTCGAGAGGGGATGTTTCGGGAAGTACGGATGAAAGTGAACAGTTATAACAGGTTGATCGCTCTGGCA
GCCTGACGGGAGGTGAATGGCGGGGGGTAACCACCAGGATAATTATGCAACACAGCA
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 876 bp | 291 aa | 131 | 1006 | + | No |
Chemistry : DDE
ORF sequence :
MSSWSSAANSLSLDFVDQWDAQLAQMNAGKRGRPFQYPESFIAWMARIHIFLQMPYRQMEGFVRKLATFIPSLKAANYTTLFCRIKNLDLSLEALPEILA
DDVIVGADSTGIKVTNRGEWMREKWGARRGWIKVHLMIDVETNQALGLEITDEAMQDDQRFIPLLDQTQQNCGEEHPVYRVLADGAYDRNKLFNALEHRG
IASGIKTRVNAATHSTGSPYRAECVRNRKRWGGYPMWALVVTYGMRWKVEGAFSTIKRILGERVQATSREGMFREVRMKVNSYNRLIALAA
DDVIVGADSTGIKVTNRGEWMREKWGARRGWIKVHLMIDVETNQALGLEITDEAMQDDQRFIPLLDQTQQNCGEEHPVYRVLADGAYDRNKLFNALEHRG
IASGIKTRVNAATHSTGSPYRAECVRNRKRWGGYPMWALVVTYGMRWKVEGAFSTIKRILGERVQATSREGMFREVRMKVNSYNRLIALAA
Blast result :
Comments
ISMebo2 is 64% aa similar to ISMth3.
References
1] ISfinder annotation (2016)
2] Wibberg,Daniel. (2016) Direct submission GenBank.
3] Manzoor,Shahid. (2016) Direct submission GenBank.
2] Wibberg,Daniel. (2016) Direct submission GenBank.
3] Manzoor,Shahid. (2016) Direct submission GenBank.