ISPa1328
- Family IS256
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
AY539832 | ND | Pseudomonas aeruginosa | Pseudomonas aeruginosa isolate 288 |
DNA section
IS Length : 1328 bp
Ends
IR Length : 25/28
IRL : GAGGGTGTCCGAAATTTTGTGTAACCGGCTCATGAGCGACACTGTCGCTG
IRR : GAGGGTGTGCAGAATTTTGTGTAACCGGGGTTAGGGTTACTGCTGCGGCA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
NNNNNNNNNN | CAGCCTCG | NNNNNNNNNN | 8 |
CGAGGCTGCT | GTCTTCGA | TGAACCCCTT | 8 |
DNA sequence
GAGGGTGTCCGAAATTTTGTGTAACCGGCTCATGAGCGACACTGTCGCTGAGAACTGGAGACACCATGAACAAGACGCCCCACACCATTACCGACGAACT
GCTGGATCAGCTTCTGGCCAATTATCAGAAGCCTGAAGACTTGATCGGTACCGACGGCATCCTCAAGCAACTGACCAAGAAGTTGGTCGAGCGTGCGCTG
GATGCCGAGCTGACCCACCACCTGGGCCACAACAAGCATCAGCCTGTCAGCAATTGGATGGGCAACACCCGCAACGGTTTCAGCAAGAAGAAACTCAAGG
GCGAGTTCGGTGAACTGCCCATCGAGGTACCGCGCGACCGGCATGGCACCTTCGATCCGCAGATCATCGAGAAGCACCAGACCCGCTGGACGGGCTTCGA
CGACAAGATCCTTTCGCTGTATGCCCGCGGCATGACGGTGCGCGAGATCCAGGCGCACTTGCAGGAAATGTACGGTGCCGAGGTGTCACCCAGCCTGATC
TCCTCGGTGACCGACGCGGTGGCCGATGAGGTCAAGGCCTGGCAGTCGCGCCCGCTCGATACGGTGTATCCCATCGTCTACCTCGACTGCATCCACAGCA
AGGTGCGCGAGGGCGCCGTGCGGGTGAAGGCGGTCTATCTGGCGCTGGGTATCAACCTGGCCGGCGAGAAGGAAATCCTCGGCCTGTGGATCGCCCAGAA
CGAGGGCGCCAAGTTCTGGTTGCAGGTGGTGACCGAACTGCGCAACCGTGGCGTTCAGGACATCTTCGTCGCCTGCGTGGATGGCTTGAAGGGCTTCCCC
GAGGCCATCGAGGCGGTGTTCCCGCGCACCAGCGTGCAGCTGTGCATCGTGCACATGGTCAGGCACAGCCTGAACTACGTGTCCTGGAAGCGGCGGGCGG
AGGTCGCCGCCGACCTGAAGCGGATTTACCAGTCCAGCACCGCTGACGAGGCCGAACTGCGCCTCGGTGAATTCGAGGCCAAGTGGGATGACGACTACCT
GCCGATTGGCCAGTCCTGGCGACGCAACTGGGCCAGGATCACGCCGTTCTTCGACTTCCCGCCGGAGATCCGAAAGGTGATCTACACCACCAACGCCATC
GAATCGGTGAACATGAGCCTGCGCAAGATTACCAAGAACCGCGGCTCGTTCCCCAGTGACGAGGCGCTGCTGAAACTCTTCTACCTGGCGCTACGCAACA
TCAGCAAGAAATGGACGATGCCGATCCGTGACTGGAAGGCGGCGCTGACTCGCTTTACGATCAGCTACGAAGACCGCCTGCCGCAGCAGTAACCCTAACC
CCGGTTACACAAAATTCTGCACACCCTC
GCTGGATCAGCTTCTGGCCAATTATCAGAAGCCTGAAGACTTGATCGGTACCGACGGCATCCTCAAGCAACTGACCAAGAAGTTGGTCGAGCGTGCGCTG
GATGCCGAGCTGACCCACCACCTGGGCCACAACAAGCATCAGCCTGTCAGCAATTGGATGGGCAACACCCGCAACGGTTTCAGCAAGAAGAAACTCAAGG
GCGAGTTCGGTGAACTGCCCATCGAGGTACCGCGCGACCGGCATGGCACCTTCGATCCGCAGATCATCGAGAAGCACCAGACCCGCTGGACGGGCTTCGA
CGACAAGATCCTTTCGCTGTATGCCCGCGGCATGACGGTGCGCGAGATCCAGGCGCACTTGCAGGAAATGTACGGTGCCGAGGTGTCACCCAGCCTGATC
TCCTCGGTGACCGACGCGGTGGCCGATGAGGTCAAGGCCTGGCAGTCGCGCCCGCTCGATACGGTGTATCCCATCGTCTACCTCGACTGCATCCACAGCA
AGGTGCGCGAGGGCGCCGTGCGGGTGAAGGCGGTCTATCTGGCGCTGGGTATCAACCTGGCCGGCGAGAAGGAAATCCTCGGCCTGTGGATCGCCCAGAA
CGAGGGCGCCAAGTTCTGGTTGCAGGTGGTGACCGAACTGCGCAACCGTGGCGTTCAGGACATCTTCGTCGCCTGCGTGGATGGCTTGAAGGGCTTCCCC
GAGGCCATCGAGGCGGTGTTCCCGCGCACCAGCGTGCAGCTGTGCATCGTGCACATGGTCAGGCACAGCCTGAACTACGTGTCCTGGAAGCGGCGGGCGG
AGGTCGCCGCCGACCTGAAGCGGATTTACCAGTCCAGCACCGCTGACGAGGCCGAACTGCGCCTCGGTGAATTCGAGGCCAAGTGGGATGACGACTACCT
GCCGATTGGCCAGTCCTGGCGACGCAACTGGGCCAGGATCACGCCGTTCTTCGACTTCCCGCCGGAGATCCGAAAGGTGATCTACACCACCAACGCCATC
GAATCGGTGAACATGAGCCTGCGCAAGATTACCAAGAACCGCGGCTCGTTCCCCAGTGACGAGGCGCTGCTGAAACTCTTCTACCTGGCGCTACGCAACA
TCAGCAAGAAATGGACGATGCCGATCCGTGACTGGAAGGCGGCGCTGACTCGCTTTACGATCAGCTACGAAGACCGCCTGCCGCAGCAGTAACCCTAACC
CCGGTTACACAAAATTCTGCACACCCTC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1227 bp | 408 aa | 66 | 1292 | + | No |
Chemistry : DDE
ORF sequence :
MNKTPHTITDELLDQLLANYQKPEDLIGTDGILKQLTKKLVERALDAELTHHLGHNKHQPVSNWMGNTRNGFSKKKLKGEFGELPIEVPRDRHGTFDPQI
IEKHQTRWTGFDDKILSLYARGMTVREIQAHLQEMYGAEVSPSLISSVTDAVADEVKAWQSRPLDTVYPIVYLDCIHSKVREGAVRVKAVYLALGINLAG
EKEILGLWIAQNEGAKFWLQVVTELRNRGVQDIFVACVDGLKGFPEAIEAVFPRTSVQLCIVHMVRHSLNYVSWKRRAEVAADLKRIYQSSTADEAELRL
GEFEAKWDDDYLPIGQSWRRNWARITPFFDFPPEIRKVIYTTNAIESVNMSLRKITKNRGSFPSDEALLKLFYLALRNISKKWTMPIRDWKAALTRFTIS
YEDRLPQQ
IEKHQTRWTGFDDKILSLYARGMTVREIQAHLQEMYGAEVSPSLISSVTDAVADEVKAWQSRPLDTVYPIVYLDCIHSKVREGAVRVKAVYLALGINLAG
EKEILGLWIAQNEGAKFWLQVVTELRNRGVQDIFVACVDGLKGFPEAIEAVFPRTSVQLCIVHMVRHSLNYVSWKRRAEVAADLKRIYQSSTADEAELRL
GEFEAKWDDDYLPIGQSWRRNWARITPFFDFPPEIRKVIYTTNAIESVNMSLRKITKNRGSFPSDEALLKLFYLALRNISKKWTMPIRDWKAALTRFTIS
YEDRLPQQ
Blast result :
Comments
ISPa1328 is 82% aa similar to ISCARN40.
References
1] ISfinder submission (2012)
2] Wolter,D.J., Hanson,N.D. and Lister,P.D. (2004) FEMS Microbiol. Lett. 236 (1), 137-143.
3] Wang,J., Zhou,J.Y., Qu,T.T., Shen,P., Wei,Z.Q., Yu,Y.S. and Li,L.J. (2010) Int. J. Antimicrob. Agents 35 (5), 486-491.
2] Wolter,D.J., Hanson,N.D. and Lister,P.D. (2004) FEMS Microbiol. Lett. 236 (1), 137-143.
3] Wang,J., Zhou,J.Y., Qu,T.T., Shen,P., Wei,Z.Q., Yu,Y.S. and Li,L.J. (2010) Int. J. Antimicrob. Agents 35 (5), 486-491.