ISPa1328

  • Family IS256
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
AY539832 ND Pseudomonas aeruginosa
Pseudomonas aeruginosa isolate 288
DNA section
IS Length : 1328 bp

Ends


IR Length : 25/28

IRL : GAGGGTGTCCGAAATTTTGTGTAACCGGCTCATGAGCGACACTGTCGCTG
IRR : GAGGGTGTGCAGAATTTTGTGTAACCGGGGTTAGGGTTACTGCTGCGGCA

Insertion site


Left flankDirect repeatRight flankDR Length
NNNNNNNNNNCAGCCTCGNNNNNNNNNN8
CGAGGCTGCTGTCTTCGATGAACCCCTT8

DNA sequence

GAGGGTGTCCGAAATTTTGTGTAACCGGCTCATGAGCGACACTGTCGCTGAGAACTGGAGACACCATGAACAAGACGCCCCACACCATTACCGACGAACT
GCTGGATCAGCTTCTGGCCAATTATCAGAAGCCTGAAGACTTGATCGGTACCGACGGCATCCTCAAGCAACTGACCAAGAAGTTGGTCGAGCGTGCGCTG
GATGCCGAGCTGACCCACCACCTGGGCCACAACAAGCATCAGCCTGTCAGCAATTGGATGGGCAACACCCGCAACGGTTTCAGCAAGAAGAAACTCAAGG
GCGAGTTCGGTGAACTGCCCATCGAGGTACCGCGCGACCGGCATGGCACCTTCGATCCGCAGATCATCGAGAAGCACCAGACCCGCTGGACGGGCTTCGA
CGACAAGATCCTTTCGCTGTATGCCCGCGGCATGACGGTGCGCGAGATCCAGGCGCACTTGCAGGAAATGTACGGTGCCGAGGTGTCACCCAGCCTGATC
TCCTCGGTGACCGACGCGGTGGCCGATGAGGTCAAGGCCTGGCAGTCGCGCCCGCTCGATACGGTGTATCCCATCGTCTACCTCGACTGCATCCACAGCA
AGGTGCGCGAGGGCGCCGTGCGGGTGAAGGCGGTCTATCTGGCGCTGGGTATCAACCTGGCCGGCGAGAAGGAAATCCTCGGCCTGTGGATCGCCCAGAA
CGAGGGCGCCAAGTTCTGGTTGCAGGTGGTGACCGAACTGCGCAACCGTGGCGTTCAGGACATCTTCGTCGCCTGCGTGGATGGCTTGAAGGGCTTCCCC
GAGGCCATCGAGGCGGTGTTCCCGCGCACCAGCGTGCAGCTGTGCATCGTGCACATGGTCAGGCACAGCCTGAACTACGTGTCCTGGAAGCGGCGGGCGG
AGGTCGCCGCCGACCTGAAGCGGATTTACCAGTCCAGCACCGCTGACGAGGCCGAACTGCGCCTCGGTGAATTCGAGGCCAAGTGGGATGACGACTACCT
GCCGATTGGCCAGTCCTGGCGACGCAACTGGGCCAGGATCACGCCGTTCTTCGACTTCCCGCCGGAGATCCGAAAGGTGATCTACACCACCAACGCCATC
GAATCGGTGAACATGAGCCTGCGCAAGATTACCAAGAACCGCGGCTCGTTCCCCAGTGACGAGGCGCTGCTGAAACTCTTCTACCTGGCGCTACGCAACA
TCAGCAAGAAATGGACGATGCCGATCCGTGACTGGAAGGCGGCGCTGACTCGCTTTACGATCAGCTACGAAGACCGCCTGCCGCAGCAGTAACCCTAACC
CCGGTTACACAAAATTCTGCACACCCTC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1227 bp408 aa661292+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MNKTPHTITDELLDQLLANYQKPEDLIGTDGILKQLTKKLVERALDAELTHHLGHNKHQPVSNWMGNTRNGFSKKKLKGEFGELPIEVPRDRHGTFDPQI
IEKHQTRWTGFDDKILSLYARGMTVREIQAHLQEMYGAEVSPSLISSVTDAVADEVKAWQSRPLDTVYPIVYLDCIHSKVREGAVRVKAVYLALGINLAG
EKEILGLWIAQNEGAKFWLQVVTELRNRGVQDIFVACVDGLKGFPEAIEAVFPRTSVQLCIVHMVRHSLNYVSWKRRAEVAADLKRIYQSSTADEAELRL
GEFEAKWDDDYLPIGQSWRRNWARITPFFDFPPEIRKVIYTTNAIESVNMSLRKITKNRGSFPSDEALLKLFYLALRNISKKWTMPIRDWKAALTRFTIS
YEDRLPQQ

 

Blast result :
Comments
ISPa1328 is 82% aa similar to ISCARN40.
References
1] ISfinder submission (2012)
2] Wolter,D.J., Hanson,N.D. and Lister,P.D. (2004) FEMS Microbiol. Lett. 236 (1), 137-143.
3] Wang,J., Zhou,J.Y., Qu,T.T., Shen,P., Wei,Z.Q., Yu,Y.S. and Li,L.J. (2010) Int. J. Antimicrob. Agents 35 (5), 486-491.