ISArch24

  • Family IS5
  • Group IS903
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
LHYJ01000011 ND Uncultured archeon
Uncultured archeon
Candidate divison MSBL1 archaeon SCGC-AAA382N08
DNA section
IS Length : 1040 bp

Ends


IR Length : 16

IRL : TGCTGTGTTGCGTAAAGGCTATATTTGATTTGTTGGATAGGTGTTTTTAG
IRR : TGCTGTGTTGCGTAAATCTTGATAAAAATTTCTACCTCTAGTTTTGTCGA

Insertion site


Left flankDirect repeatRight flankDR Length
TGGAGAACTATCTCTACCTCTTCTTTTT8

DNA sequence

TGCTGTGTTGCGTAAAGGCTATATTTGATTTGTTGGATAGGTGTTTTTAGTTCTCGGGGGCTGACTGCTGGACGGCTGGGTCGAAGAATTCAAAGGAGGC
GGTCATATGACCCGTGATTGGAAGAAATACAACGAGGAACTCGTCAAGAGGGGCGAGTTTTACCTCAGTCCCGACTTTCTCAAAAATTGGGACGAAGAAT
TAAAGGGGATGAACGAGGGTAAGGTTGGAAGGCCTTACAAGTTTCCTGAAAGTTATGTCCAGTTCGCTGCTTTGTGGTACGAGTTTTTCCACTTACCGTA
TCGACAGTTGGAAGGGGCTTTGAGAAAACTTTCCGAGTTAATTCCCGAGTTGGAAGTTTCCAACTATTCGAGACTTTGCCGAAGGTTCAAAGAACTAGAG
TTTGAAATACCTCAGAGTGAGGATAAGGTTGTGGCTGCGGTTGACGCTACCGGAGTCAAAGTAACGAACCGGGGCGAATGGTTGAGAAAGTACCACAAAA
AGGAGAGAAGAGGTTGGATCAAAGTCCACGTCGCGGTGGACGTGGAGAGTAAGGAGCTCTTGTCAATCGAAGTGACGGACGAAAAGACGGGAGACTCCGA
GGTTTTCGAGGATTTAGTCGAAGACCTGGATCTGGAGAACTGCATAGCGGATGGGGCTTACGACTCTGAAGAGATTTTCGAAATCCTGAAAGAAAAAGGA
GTTGACCCACCGCCCGCCGTCAAACTCCGTAAAAACGCGAACACAGGACTTTCACCGAGAGGGAAAGCCGCTCGAGAATTCCACAAACTCGGATACGAAA
AATGGAAAGAAAAACACAACTACGGGAAACGATGGAGCGTTGAAGGGTTCTTCTCCGCAGTCAAGCGGTGCTTCGGCGAAACCGTAAGAGCAGCAACACC
AGAAGGAATGGTTCGAGAAGTGAAGAGAAAGTTCGCACTGTACAACTTGGTAACAAAAATCTAAAGGGACAAAAACGACCGGAGGGAACCTCGACAAAAC
TAGAGGTAGAAATTTTTATCAAGATTTACGCAACACAGCA
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
858 bp285 aa107964+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MTRDWKKYNEELVKRGEFYLSPDFLKNWDEELKGMNEGKVGRPYKFPESYVQFAALWYEFFHLPYRQLEGALRKLSELIPELEVSNYSRLCRRFKELEFE
IPQSEDKVVAAVDATGVKVTNRGEWLRKYHKKERRGWIKVHVAVDVESKELLSIEVTDEKTGDSEVFEDLVEDLDLENCIADGAYDSEEIFEILKEKGVD
PPPAVKLRKNANTGLSPRGKAAREFHKLGYEKWKEKHNYGKRWSVEGFFSAVKRCFGETVRAATPEGMVREVKRKFALYNLVTKI

 

Blast result :
Comments
ISArch24 is 72% aa similar to ISMth3.
References
1] ISfinder annotation (2016)
2] Mwirichia,R., Alam,I., Rashid,M., Vinu,M., Ba-Alawi,W., Anthony Kamau,A., Kamanda Ngugi,D., Goker,M., Klenk,H.P., Bajic,V. and Stingl,U. (2016) Sci Rep 6, 19181.