ISArch24
- Family IS5
- Group IS903
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
LHYJ01000011 | ND | Uncultured archeon | Uncultured archeon Candidate divison MSBL1 archaeon SCGC-AAA382N08 |
DNA section
IS Length : 1040 bp
Ends
IR Length : 16
IRL : TGCTGTGTTGCGTAAAGGCTATATTTGATTTGTTGGATAGGTGTTTTTAG
IRR : TGCTGTGTTGCGTAAATCTTGATAAAAATTTCTACCTCTAGTTTTGTCGA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TGGAGAACTA | TCTCTACC | TCTTCTTTTT | 8 |
DNA sequence
TGCTGTGTTGCGTAAAGGCTATATTTGATTTGTTGGATAGGTGTTTTTAGTTCTCGGGGGCTGACTGCTGGACGGCTGGGTCGAAGAATTCAAAGGAGGC
GGTCATATGACCCGTGATTGGAAGAAATACAACGAGGAACTCGTCAAGAGGGGCGAGTTTTACCTCAGTCCCGACTTTCTCAAAAATTGGGACGAAGAAT
TAAAGGGGATGAACGAGGGTAAGGTTGGAAGGCCTTACAAGTTTCCTGAAAGTTATGTCCAGTTCGCTGCTTTGTGGTACGAGTTTTTCCACTTACCGTA
TCGACAGTTGGAAGGGGCTTTGAGAAAACTTTCCGAGTTAATTCCCGAGTTGGAAGTTTCCAACTATTCGAGACTTTGCCGAAGGTTCAAAGAACTAGAG
TTTGAAATACCTCAGAGTGAGGATAAGGTTGTGGCTGCGGTTGACGCTACCGGAGTCAAAGTAACGAACCGGGGCGAATGGTTGAGAAAGTACCACAAAA
AGGAGAGAAGAGGTTGGATCAAAGTCCACGTCGCGGTGGACGTGGAGAGTAAGGAGCTCTTGTCAATCGAAGTGACGGACGAAAAGACGGGAGACTCCGA
GGTTTTCGAGGATTTAGTCGAAGACCTGGATCTGGAGAACTGCATAGCGGATGGGGCTTACGACTCTGAAGAGATTTTCGAAATCCTGAAAGAAAAAGGA
GTTGACCCACCGCCCGCCGTCAAACTCCGTAAAAACGCGAACACAGGACTTTCACCGAGAGGGAAAGCCGCTCGAGAATTCCACAAACTCGGATACGAAA
AATGGAAAGAAAAACACAACTACGGGAAACGATGGAGCGTTGAAGGGTTCTTCTCCGCAGTCAAGCGGTGCTTCGGCGAAACCGTAAGAGCAGCAACACC
AGAAGGAATGGTTCGAGAAGTGAAGAGAAAGTTCGCACTGTACAACTTGGTAACAAAAATCTAAAGGGACAAAAACGACCGGAGGGAACCTCGACAAAAC
TAGAGGTAGAAATTTTTATCAAGATTTACGCAACACAGCA
GGTCATATGACCCGTGATTGGAAGAAATACAACGAGGAACTCGTCAAGAGGGGCGAGTTTTACCTCAGTCCCGACTTTCTCAAAAATTGGGACGAAGAAT
TAAAGGGGATGAACGAGGGTAAGGTTGGAAGGCCTTACAAGTTTCCTGAAAGTTATGTCCAGTTCGCTGCTTTGTGGTACGAGTTTTTCCACTTACCGTA
TCGACAGTTGGAAGGGGCTTTGAGAAAACTTTCCGAGTTAATTCCCGAGTTGGAAGTTTCCAACTATTCGAGACTTTGCCGAAGGTTCAAAGAACTAGAG
TTTGAAATACCTCAGAGTGAGGATAAGGTTGTGGCTGCGGTTGACGCTACCGGAGTCAAAGTAACGAACCGGGGCGAATGGTTGAGAAAGTACCACAAAA
AGGAGAGAAGAGGTTGGATCAAAGTCCACGTCGCGGTGGACGTGGAGAGTAAGGAGCTCTTGTCAATCGAAGTGACGGACGAAAAGACGGGAGACTCCGA
GGTTTTCGAGGATTTAGTCGAAGACCTGGATCTGGAGAACTGCATAGCGGATGGGGCTTACGACTCTGAAGAGATTTTCGAAATCCTGAAAGAAAAAGGA
GTTGACCCACCGCCCGCCGTCAAACTCCGTAAAAACGCGAACACAGGACTTTCACCGAGAGGGAAAGCCGCTCGAGAATTCCACAAACTCGGATACGAAA
AATGGAAAGAAAAACACAACTACGGGAAACGATGGAGCGTTGAAGGGTTCTTCTCCGCAGTCAAGCGGTGCTTCGGCGAAACCGTAAGAGCAGCAACACC
AGAAGGAATGGTTCGAGAAGTGAAGAGAAAGTTCGCACTGTACAACTTGGTAACAAAAATCTAAAGGGACAAAAACGACCGGAGGGAACCTCGACAAAAC
TAGAGGTAGAAATTTTTATCAAGATTTACGCAACACAGCA
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
858 bp | 285 aa | 107 | 964 | + | No |
Chemistry : DDE
ORF sequence :
MTRDWKKYNEELVKRGEFYLSPDFLKNWDEELKGMNEGKVGRPYKFPESYVQFAALWYEFFHLPYRQLEGALRKLSELIPELEVSNYSRLCRRFKELEFE
IPQSEDKVVAAVDATGVKVTNRGEWLRKYHKKERRGWIKVHVAVDVESKELLSIEVTDEKTGDSEVFEDLVEDLDLENCIADGAYDSEEIFEILKEKGVD
PPPAVKLRKNANTGLSPRGKAAREFHKLGYEKWKEKHNYGKRWSVEGFFSAVKRCFGETVRAATPEGMVREVKRKFALYNLVTKI
IPQSEDKVVAAVDATGVKVTNRGEWLRKYHKKERRGWIKVHVAVDVESKELLSIEVTDEKTGDSEVFEDLVEDLDLENCIADGAYDSEEIFEILKEKGVD
PPPAVKLRKNANTGLSPRGKAAREFHKLGYEKWKEKHNYGKRWSVEGFFSAVKRCFGETVRAATPEGMVREVKRKFALYNLVTKI
Blast result :
Comments
ISArch24 is 72% aa similar to ISMth3.
References
1] ISfinder annotation (2016)
2] Mwirichia,R., Alam,I., Rashid,M., Vinu,M., Ba-Alawi,W., Anthony Kamau,A., Kamanda Ngugi,D., Goker,M., Klenk,H.P., Bajic,V. and Stingl,U. (2016) Sci Rep 6, 19181.
2] Mwirichia,R., Alam,I., Rashid,M., Vinu,M., Ba-Alawi,W., Anthony Kamau,A., Kamanda Ngugi,D., Goker,M., Klenk,H.P., Bajic,V. and Stingl,U. (2016) Sci Rep 6, 19181.