ISArch23
- Family IS5
- Group IS903
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
CP009479 | ND | Uncultured archaeon | Uncultured archaeon |
DNA section
IS Length : 1001 bp
Ends
IR Length : 16/18
IRL : TAGTGTGTTGCATAATTCCCCTGTATAATGAAATACAGGGGAACGATTTG
IRR : TAGTGCGTTGCACAATTCAATAGGCATGTGTCATCTCTCTCATGATGTTG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
ACAAATCCATCTGTTTTA | AAGTCTTGA | ATAAAATACTTAATGTTT | 9 |
TCGCCGCTTATATACTTC | GCATTACAC | AAAGGTATTTTAAGTCTA | 9 |
DNA sequence
TAGTGTGTTGCATAATTCCCCTGTATAATGAAATACAGGGGAACGATTTGTTGTTATGACACCACAACAAATCACTGCAATAGGCAATAGAAGCACAAGA
AGATATTGGGTTGGTTCTAACCGAAGGCATGACAGGTACAACCGATCCTTGGTGAACAGGGTTGAAGACCTCATGGACCCTTCATTCCTCATGAACTGGA
AGAACCTGCTGCAGGATAACAACAGAGGAAAGAGAGGACATCCCTTCAAAACACCAAATGCGTTCATAACATTCCTTGCGAAGCTGAGAGCACTGTACAG
CGTTCCCTTCAGGTCTCTTGAAGGAATTGCCAGGGTATTCTCCAGGATCTCGGGAATCAGGACAGTGTGCTATACCAACATATTCAGGAGGATCAGGAAG
ATCGTGCCAACTCTTCCCCATACTGATGGGAAACCGGTGGACTGTGCCATTGATTCCACCGGTTTCAAGATCACTATCAGGGGCGATTATCTGGGTACTA
AATGGAATCGCCGCAGAAGAGGATGGAACAAGCTCCATGCGGTCATCTCAATACATGATGTCTCGGTGCTCTCCTTCTCCATCACCGATGAGCATGTCCA
TGATGCGAAGGAGGGCAGAAAGATACTGGAATCTGTCAGGGACAGAATACTGAGGATATACGGAGACAAGGGATATGATTCAAAGAAGATATTCAATGAC
TTTGGGCATGGCACAATAATACCGCCAAGGAAGAACGCCTCCACACAATCCAGGGGATCACCGGCAAGGGCTAAGGTTGTCAGACAGATCAGAAGGACAT
CTGAGAAGAGGTGGAAGGAATCGGTACAGTATGGGAAACGGTGGAATGTAGAGATATATTTCTCAGGTCTCAAGAGAACAATGGGTGAGGTGATCAAGGC
TGTCAGGTCTGATTACATAGTTCAGGAGATCGCCCTGAAGGTGCAGTACTACAACATCATGAGAGAGATGACACATGCCTATTGAATTGTGCAACGCACT
A
AGATATTGGGTTGGTTCTAACCGAAGGCATGACAGGTACAACCGATCCTTGGTGAACAGGGTTGAAGACCTCATGGACCCTTCATTCCTCATGAACTGGA
AGAACCTGCTGCAGGATAACAACAGAGGAAAGAGAGGACATCCCTTCAAAACACCAAATGCGTTCATAACATTCCTTGCGAAGCTGAGAGCACTGTACAG
CGTTCCCTTCAGGTCTCTTGAAGGAATTGCCAGGGTATTCTCCAGGATCTCGGGAATCAGGACAGTGTGCTATACCAACATATTCAGGAGGATCAGGAAG
ATCGTGCCAACTCTTCCCCATACTGATGGGAAACCGGTGGACTGTGCCATTGATTCCACCGGTTTCAAGATCACTATCAGGGGCGATTATCTGGGTACTA
AATGGAATCGCCGCAGAAGAGGATGGAACAAGCTCCATGCGGTCATCTCAATACATGATGTCTCGGTGCTCTCCTTCTCCATCACCGATGAGCATGTCCA
TGATGCGAAGGAGGGCAGAAAGATACTGGAATCTGTCAGGGACAGAATACTGAGGATATACGGAGACAAGGGATATGATTCAAAGAAGATATTCAATGAC
TTTGGGCATGGCACAATAATACCGCCAAGGAAGAACGCCTCCACACAATCCAGGGGATCACCGGCAAGGGCTAAGGTTGTCAGACAGATCAGAAGGACAT
CTGAGAAGAGGTGGAAGGAATCGGTACAGTATGGGAAACGGTGGAATGTAGAGATATATTTCTCAGGTCTCAAGAGAACAATGGGTGAGGTGATCAAGGC
TGTCAGGTCTGATTACATAGTTCAGGAGATCGCCCTGAAGGTGCAGTACTACAACATCATGAGAGAGATGACACATGCCTATTGAATTGTGCAACGCACT
A
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
930 bp | 309 aa | 56 | 985 | + | No |
Chemistry : DDE
ORF sequence :
MTPQQITAIGNRSTRRYWVGSNRRHDRYNRSLVNRVEDLMDPSFLMNWKNLLQDNNRGKRGHPFKTPNAFITFLAKLRALYSVPFRSLEGIARVFSRISG
IRTVCYTNIFRRIRKIVPTLPHTDGKPVDCAIDSTGFKITIRGDYLGTKWNRRRRGWNKLHAVISIHDVSVLSFSITDEHVHDAKEGRKILESVRDRILR
IYGDKGYDSKKIFNDFGHGTIIPPRKNASTQSRGSPARAKVVRQIRRTSEKRWKESVQYGKRWNVEIYFSGLKRTMGEVIKAVRSDYIVQEIALKVQYYN
IMREMTHAY
IRTVCYTNIFRRIRKIVPTLPHTDGKPVDCAIDSTGFKITIRGDYLGTKWNRRRRGWNKLHAVISIHDVSVLSFSITDEHVHDAKEGRKILESVRDRILR
IYGDKGYDSKKIFNDFGHGTIIPPRKNASTQSRGSPARAKVVRQIRRTSEKRWKESVQYGKRWNVEIYFSGLKRTMGEVIKAVRSDYIVQEIALKVQYYN
IMREMTHAY
Blast result :
Comments
ISArch23 is 80% aa similar to ISFac2.
References
1] Isfinder annotation (2016)
2] AUTHORS Wang,X., Shand,P., Greenfield,P., Wang,Y., Wu,L., Chen,M., Baker,A. and Reeve,P. (2014) Direct submission GenBank.
2] AUTHORS Wang,X., Shand,P., Greenfield,P., Wang,Y., Wu,L., Chen,M., Baker,A. and Reeve,P. (2014) Direct submission GenBank.