ISArch23

  • Family IS5
  • Group IS903
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
CP009479 ND Uncultured archaeon
Uncultured archaeon
DNA section
IS Length : 1001 bp

Ends


IR Length : 16/18

IRL : TAGTGTGTTGCATAATTCCCCTGTATAATGAAATACAGGGGAACGATTTG
IRR : TAGTGCGTTGCACAATTCAATAGGCATGTGTCATCTCTCTCATGATGTTG

Insertion site


Left flankDirect repeatRight flankDR Length
ACAAATCCATCTGTTTTAAAGTCTTGAATAAAATACTTAATGTTT9
TCGCCGCTTATATACTTCGCATTACACAAAGGTATTTTAAGTCTA9

DNA sequence

TAGTGTGTTGCATAATTCCCCTGTATAATGAAATACAGGGGAACGATTTGTTGTTATGACACCACAACAAATCACTGCAATAGGCAATAGAAGCACAAGA
AGATATTGGGTTGGTTCTAACCGAAGGCATGACAGGTACAACCGATCCTTGGTGAACAGGGTTGAAGACCTCATGGACCCTTCATTCCTCATGAACTGGA
AGAACCTGCTGCAGGATAACAACAGAGGAAAGAGAGGACATCCCTTCAAAACACCAAATGCGTTCATAACATTCCTTGCGAAGCTGAGAGCACTGTACAG
CGTTCCCTTCAGGTCTCTTGAAGGAATTGCCAGGGTATTCTCCAGGATCTCGGGAATCAGGACAGTGTGCTATACCAACATATTCAGGAGGATCAGGAAG
ATCGTGCCAACTCTTCCCCATACTGATGGGAAACCGGTGGACTGTGCCATTGATTCCACCGGTTTCAAGATCACTATCAGGGGCGATTATCTGGGTACTA
AATGGAATCGCCGCAGAAGAGGATGGAACAAGCTCCATGCGGTCATCTCAATACATGATGTCTCGGTGCTCTCCTTCTCCATCACCGATGAGCATGTCCA
TGATGCGAAGGAGGGCAGAAAGATACTGGAATCTGTCAGGGACAGAATACTGAGGATATACGGAGACAAGGGATATGATTCAAAGAAGATATTCAATGAC
TTTGGGCATGGCACAATAATACCGCCAAGGAAGAACGCCTCCACACAATCCAGGGGATCACCGGCAAGGGCTAAGGTTGTCAGACAGATCAGAAGGACAT
CTGAGAAGAGGTGGAAGGAATCGGTACAGTATGGGAAACGGTGGAATGTAGAGATATATTTCTCAGGTCTCAAGAGAACAATGGGTGAGGTGATCAAGGC
TGTCAGGTCTGATTACATAGTTCAGGAGATCGCCCTGAAGGTGCAGTACTACAACATCATGAGAGAGATGACACATGCCTATTGAATTGTGCAACGCACT
A
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
930 bp309 aa56985+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MTPQQITAIGNRSTRRYWVGSNRRHDRYNRSLVNRVEDLMDPSFLMNWKNLLQDNNRGKRGHPFKTPNAFITFLAKLRALYSVPFRSLEGIARVFSRISG
IRTVCYTNIFRRIRKIVPTLPHTDGKPVDCAIDSTGFKITIRGDYLGTKWNRRRRGWNKLHAVISIHDVSVLSFSITDEHVHDAKEGRKILESVRDRILR
IYGDKGYDSKKIFNDFGHGTIIPPRKNASTQSRGSPARAKVVRQIRRTSEKRWKESVQYGKRWNVEIYFSGLKRTMGEVIKAVRSDYIVQEIALKVQYYN
IMREMTHAY

 

Blast result :
Comments
ISArch23 is 80% aa similar to ISFac2.
References
1] Isfinder annotation (2016)
2] AUTHORS Wang,X., Shand,P., Greenfield,P., Wang,Y., Wu,L., Chen,M., Baker,A. and Reeve,P. (2014) Direct submission GenBank.