ISMeth1

  • Family IS5
  • Group IS903
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
LKCM01000400 ND Candidatus Methanoperedens
Candidatus Methanoperedens sp. BLZ1
DNA section
IS Length : 1144 bp

Ends


IR Length : 15/16

IRL : TGCTGTGTTGAATAAAGGAAATATTTTGTTCGTACTTGTATGAATAATAT
IRR : TGCTCTGTTGAATAAATCCTCATTTCTCGACTTATCCCACTCCAACCTTC

Insertion site


Left flankDirect repeatRight flankDR Length
AAAGAGGATTTTTCTTTTGGNNNN0

DNA sequence

TGCTGTGTTGAATAAAGGAAATATTTTGTTCGTACTTGTATGAATAATATTTATAACCATGTAAATCTTATGTTATCTTCAAAACATTAACAGGAGACTA
TCAACTCAAATAAATGAATTCAAAAAAAGCACAGCAGAAGAAAGAAAAAGTAAAGCAAAAGAGATGGGGCAAAAAATTCGAAGATAAACGAAATTGGAAA
GAGTATAATGAAAAACTGGTTAAACGGGGAGAACTTTATCTCTCCCTTGATTTTCTTGAGAATTGGGATAATGAATTGGATAAAATGAACAAGGACAAAA
AAGGTGCACCCTTCTCATACCCGGAACAGTTTGTTCTATTTATGGCATTTGTATATTCGATATTCCATCTTCCATACAGGCAGCTGGAAGGATTCTTAAG
AAAATTATCCGACTTGATCTCGCGAGACATAGCAGCTGATTACACAACTTTATTCAAACGTATAGCAAAAATGAACATTATACTGCCTGAAACGATTTCT
GAAAAAAAGGAAGATATAGTAATAGCTGTTGATTCCTCTGGTGTGAAAGTTACCAACCGTGGGGAATGGATGAGAGAAAAATGGAAAGTACATAGGGGAT
GGATCAAAGCACATATAGCAATAGACATTAAAACTAAAGAGACTCTTGCTATTGAAATAACAGATGAAACCGTAGCTGATAGCGATAAATTTGATGATCT
TATAAATCAAACAGAACAAAATATAGAAGGCAGGAAAGTAAAACGTGCTTTAGGAGACGGTGGTTATGATGATAAAGATTGTTTCAATACTTTAGATAAA
AAGAAGATAGAGTCCGGGATAAAAACAAGAATTAATGCGAGTACAAAGTCAAGAGGGTCGCCGTATCGAGCTAAGTGTGTAAGAGAAAAGGAAGAACTTG
GTGGTTACAAAGGTTGGCGGGATAAGTATGAATACAGTAAACGCTGGCTTGCAGAAAGCGTACTTTCTGCTGTGAAAAGAATATTTGGTGAAACCGTCAG
AGCGACCAGCATCGACGGAATGTTCAGAGAAACAAAAATGAAGTTTATGTGCTACAATATTCTATTAAACTGCAAATAAAACAAAAAATTTAACGAAGGT
TGGAGTGGGATAAGTCGAGAAATGAGGATTTATTCAACAGAGCA
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
966 bp321 aa1141079+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MNSKKAQQKKEKVKQKRWGKKFEDKRNWKEYNEKLVKRGELYLSLDFLENWDNELDKMNKDKKGAPFSYPEQFVLFMAFVYSIFHLPYRQLEGFLRKLSD
LISRDIAADYTTLFKRIAKMNIILPETISEKKEDIVIAVDSSGVKVTNRGEWMREKWKVHRGWIKAHIAIDIKTKETLAIEITDETVADSDKFDDLINQT
EQNIEGRKVKRALGDGGYDDKDCFNTLDKKKIESGIKTRINASTKSRGSPYRAKCVREKEELGGYKGWRDKYEYSKRWLAESVLSAVKRIFGETVRATSI
DGMFRETKMKFMCYNILLNCK

 

Blast result :
Comments
ISMeth1 is 67% aa similar to ISMth3.
References
1] ISfinder annotation (2016)
2] Arshad,A., Speth,D.R., De Graaf,R.M., Op Den Camp,H.J., Jetten,M.S. and Welte,C.U. (2015) Direct submission GenBank.